FFCP PHASE1:Hg19::chr2:128459065..128459107,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84826|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28767|TSSclassifier=S|UniProt=Q587I9|association_with_transcript=468bp_to_ENST00000310981,NM_032740,uc002tpf.2_5end|description=CAGE_peak_1_at_SFT2D3_5end|id=chr2:128459065..128459107,+|ontology_enrichment_celltype=CL:0002057!3.00e-21!42;CL:0000860!9.03e-18!45;CL:0002087!2.04e-14!119;CL:0000738!3.25e-13!140;CL:0002031!6.98e-13!124;CL:0000988!7.70e-10!182;CL:0000037!6.11e-09!172;CL:0000566!6.11e-09!172;CL:0000791!7.05e-09!18;CL:0000789!7.05e-09!18;CL:0002420!7.05e-09!18;CL:0002419!7.05e-09!18;CL:0000790!7.05e-09!18;CL:0002194!1.64e-08!63;CL:0000576!1.64e-08!63;CL:0000040!1.64e-08!63;CL:0000559!1.64e-08!63;CL:0002009!1.72e-08!65;CL:0000557!5.15e-08!71;CL:0002032!6.90e-08!165;CL:0000837!6.90e-08!165;CL:0000766!1.82e-07!76;CL:0000839!2.03e-07!70|ontology_enrichment_celltype_v019=CL:0000860;9.56e-16;33!CL:0002057;9.56e-16;33!CL:0000576;2.48e-12;48!CL:0000791;5.91e-09;18!CL:0000789;5.91e-09;18!CL:0002419;5.91e-09;18!CL:0000473;1.09e-08;39!CL:0000234;1.09e-08;39!CL:0002087;2.70e-07;104|ontology_enrichment_celltype_v019_2=CL:0000860,3.00e-21,42;CL:0002057,3.00e-21,42;CL:0002087,1.40e-16,115;CL:0000738,4.46e-15,136;CL:0000473,5.30e-15,48;CL:0000234,5.30e-15,48;CL:0002031,7.56e-15,120;CL:0000988,1.87e-11,177;CL:0002194,8.69e-11,59;CL:0000576,8.69e-11,59;CL:0000040,8.69e-11,59;CL:0000559,8.69e-11,59;CL:0002009,1.02e-10,61;CL:0000037,3.03e-10,168;CL:0000557,4.88e-10,67;CL:0000839,2.35e-09,66;CL:0000766,2.58e-09,72;CL:0002032,4.06e-09,161;CL:0000837,4.06e-09,161;CL:0000791,7.05e-09,18;CL:0000789,7.05e-09,18;CL:0002420,7.05e-09,18;CL:0002419,7.05e-09,18;CL:0000790,7.05e-09,18|ontology_enrichment_development_v019=CL:0002057;9.78e-16;42!CL:0000790;5.91e-09;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!4.55e-08!102;UBERON:0003061!4.55e-08!102;UBERON:0002193!8.40e-08!112;UBERON:0002405!1.03e-07!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.07e-09,98;UBERON:0003061,1.07e-09,98;UBERON:0002193,2.60e-09,108;UBERON:0002405,4.32e-07,93;UBERON:0002371,8.58e-07,76|phase1_expression=16.3510541343501,14.1306345768049,17.0554828956125,6.00439790118782,11.6209884551095,20.0637860543085,5.06599756336621,9.47579810140246,12.5369101535922,9.58362352355885,13.9560233594486,18.7859580031948,13.1883489114227,8.66364470720326,6.95934489028623,6.05092631806598,11.4511960324556,3.65155045193687,3.90346239032406,15.2670112015217,13.0560442396322,26.6436513256375,19.1778111377808,13.6874425072884,14.0607756346179,5.8074188368443,5.25443772479653,5.58846547327123,20.454942396143,25.7165696725133,20.5905444010381,5.51652734687356,3.31326510656075,9.24385025416969,12.8595552963301,7.53496932183334,18.7904281174302,42.1036510484227,30.6833004629317,26.0413044859022,10.7479427635164,7.77344798445551,10.8181738406358,19.7741604740208,20.4053009591957,21.3473973845278,29.9833457608333,28.370584273506,26.944454267874,27.0430848782821,24.3352671202646,19.8645073106412,37.2325335195548,39.3745656986134,39.2736811123591,27.8598662523055,25.1073658053218,20.8992840533929,22.6502080354468,26.6371092473158,18.5407766481722,16.4925650093358,22.9383206264877,14.0654167675789,19.7342282267437,18.1563271901165,18.0618452208717,27.6373531782418,41.7186334736161,29.3204940351907,13.9241885605675,32.4084319669057,21.835904733421,16.2666570460195,18.4965740969588,17.820984868212,20.1068249752226,16.6696351054072,9.96498637521897,19.3808665744049,14.9187507899318,17.7184229151695,43.9990611153307,24.0300988955338,22.2377313465889,20.0563204606258,28.0277190925209,31.6113841974966,27.7638846569642,29.5756663905963,9.10740750575117,12.9192181661607,9.55683070313072,14.5388461436928,10.0891541336676,17.9101177647052,20.8512356320663,24.7596780531974,12.130488440971,26.5826527671178,37.1551383962293,34.0882420129008,40.9136129656614,20.8337554375275,27.6929553026347,31.9008808200414,24.6431516026164,15.8833236459837,20.4193175669009,15.2927251281419,20.7262513339386,17.0983820583681,34.402482653598,26.7540828089713,27.179236189294,14.3902865225909,23.3764501097172,23.0230388473362,15.4342012131897,23.5738406599832,20.183587069549,24.7117531556577,20.4782161945771,20.2218845623981,23.7368380449457,21.0731754319175,25.4549679045524,15.1205057418549,20.3254548795466,17.0892796581703,2.43806866313962,14.0847180537764,10.2290049474824,8.31310050484502,10.5280961233537,9.84956328933601,8.74814541756209,10.2193322763554,16.5435930037119,10.4212816807405,11.7698612828789,10.1508783510727,11.6574492253614,5.19098219898201,6.49094787309367,6.96518949197069,5.45127638127347,12.1630218395724,14.2998727695032,13.7439275491939,6.75792185046797,5.16140757063675,7.98423153697467,6.21838736116411,7.1314904155684,6.87795104850169,4.80688423034664,6.71883573840255,4.62496141492723,6.02497102976406,6.44526907374635,2.28081631715554,10.98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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84826 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28767 | |||
|TSSclassifier=S | |||
|UniProt=Q587I9 | |||
|association_with_transcript=468bp_to_ENST00000310981,NM_032740,uc002tpf.2_5end | |||
|description=CAGE_peak_1_at_SFT2D3_5end | |||
|id=chr2:128459065..128459107,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.00e-21!42;CL:0000860!9.03e-18!45;CL:0002087!2.04e-14!119;CL:0000738!3.25e-13!140;CL:0002031!6.98e-13!124;CL:0000988!7.70e-10!182;CL:0000037!6.11e-09!172;CL:0000566!6.11e-09!172;CL:0000791!7.05e-09!18;CL:0000789!7.05e-09!18;CL:0002420!7.05e-09!18;CL:0002419!7.05e-09!18;CL:0000790!7.05e-09!18;CL:0002194!1.64e-08!63;CL:0000576!1.64e-08!63;CL:0000040!1.64e-08!63;CL:0000559!1.64e-08!63;CL:0002009!1.72e-08!65;CL:0000557!5.15e-08!71;CL:0002032!6.90e-08!165;CL:0000837!6.90e-08!165;CL:0000766!1.82e-07!76;CL:0000839!2.03e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.56e-16;33!CL:0002057;9.56e-16;33!CL:0000576;2.48e-12;48!CL:0000791;5.91e-09;18!CL:0000789;5.91e-09;18!CL:0002419;5.91e-09;18!CL:0000473;1.09e-08;39!CL:0000234;1.09e-08;39!CL:0002087;2.70e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.00e-21,42;CL:0002057,3.00e-21,42;CL:0002087,1.40e-16,115;CL:0000738,4.46e-15,136;CL:0000473,5.30e-15,48;CL:0000234,5.30e-15,48;CL:0002031,7.56e-15,120;CL:0000988,1.87e-11,177;CL:0002194,8.69e-11,59;CL:0000576,8.69e-11,59;CL:0000040,8.69e-11,59;CL:0000559,8.69e-11,59;CL:0002009,1.02e-10,61;CL:0000037,3.03e-10,168;CL:0000557,4.88e-10,67;CL:0000839,2.35e-09,66;CL:0000766,2.58e-09,72;CL:0002032,4.06e-09,161;CL:0000837,4.06e-09,161;CL:0000791,7.05e-09,18;CL:0000789,7.05e-09,18;CL:0002420,7.05e-09,18;CL:0002419,7.05e-09,18;CL:0000790,7.05e-09,18 | |||
|ontology_enrichment_development_v019=CL:0002057;9.78e-16;42!CL:0000790;5.91e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.55e-08!102;UBERON:0003061!4.55e-08!102;UBERON:0002193!8.40e-08!112;UBERON:0002405!1.03e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.07e-09,98;UBERON:0003061,1.07e-09,98;UBERON:0002193,2.60e-09,108;UBERON:0002405,4.32e-07,93;UBERON:0002371,8.58e-07,76 | |||
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| |||
|short_description=p1@SFT2D3 | |||
}} |
Revision as of 13:25, 12 September 2013
Short description: | p1@SFT2D3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SFT2D3_5end |
Coexpression cluster: | NA |
Association with transcript: | 468bp_to_ENST00000310981, NM_032740, uc002tpf.2_5end |
EntrezGene: | SFT2D3 |
HGNC: | 28767 |
UniProt: | Q587I9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.00e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.00e-21 | 42 |
nongranular leukocyte | 1.40e-16 | 115 |
leukocyte | 4.46e-15 | 136 |
defensive cell | 5.30e-15 | 48 |
phagocyte | 5.30e-15 | 48 |
hematopoietic lineage restricted progenitor cell | 7.56e-15 | 120 |
hematopoietic cell | 1.87e-11 | 177 |
monopoietic cell | 8.69e-11 | 59 |
monocyte | 8.69e-11 | 59 |
monoblast | 8.69e-11 | 59 |
promonocyte | 8.69e-11 | 59 |
macrophage dendritic cell progenitor | 1.02e-10 | 61 |
hematopoietic stem cell | 3.03e-10 | 168 |
granulocyte monocyte progenitor cell | 4.88e-10 | 67 |
myeloid lineage restricted progenitor cell | 2.35e-09 | 66 |
myeloid leukocyte | 2.58e-09 | 72 |
hematopoietic oligopotent progenitor cell | 4.06e-09 | 161 |
hematopoietic multipotent progenitor cell | 4.06e-09 | 161 |
mature alpha-beta T cell | 7.05e-09 | 18 |
alpha-beta T cell | 7.05e-09 | 18 |
immature T cell | 7.05e-09 | 18 |
mature T cell | 7.05e-09 | 18 |
immature alpha-beta T cell | 7.05e-09 | 18 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.07e-09 | 98 |
blood island | 1.07e-09 | 98 |
hemolymphoid system | 2.60e-09 | 108 |
immune system | 4.32e-07 | 93 |
bone marrow | 8.58e-07 | 76 |
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