FFCP PHASE1:Hg19::chr2:109237750..109237773,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3987|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6616|TSSclassifier=S|UniProt=F8WE10|association_with_transcript=21bp_to_ENST00000422797_5end|coexpression_cluster_id=C854|description=CAGE_peak_9_at_LIMS1_5end|id=chr2:109237750..109237773,+|ontology_enrichment_celltype=CL:0000542!6.62e-18!53;CL:0000051!6.62e-18!53;CL:0000838!1.93e-17!52;CL:0000084!6.12e-16!25;CL:0000827!6.12e-16!25;CL:0000791!6.92e-16!18;CL:0000789!6.92e-16!18;CL:0002420!6.92e-16!18;CL:0002419!6.92e-16!18;CL:0000790!6.92e-16!18;CL:0000738!7.45e-13!140;CL:0002087!1.23e-11!119;CL:0000625!7.34e-10!11;CL:0002031!1.70e-09!124;CL:0000037!6.62e-08!172;CL:0000566!6.62e-08!172;CL:0002032!1.31e-07!165;CL:0000837!1.31e-07!165;CL:0000624!4.84e-07!6;CL:0000988!7.83e-07!182|ontology_enrichment_celltype_v019=CL:0000791;2.39e-24;18!CL:0000789;2.39e-24;18!CL:0002419;2.39e-24;18!CL:0000084;3.87e-21;25!CL:0000624;4.88e-13;6!CL:0000625;4.45e-12;11!CL:0000542;2.95e-08;53!CL:0000898;2.48e-07;3!CL:0002166;4.52e-07;3|ontology_enrichment_celltype_v019_2=CL:0000791,2.08e-24,18;CL:0000789,2.08e-24,18;CL:0002420,2.08e-24,18;CL:0002419,2.08e-24,18;CL:0000790,2.08e-24,18;CL:0000084,3.27e-21,25;CL:0000827,3.27e-21,25;CL:0000838,4.62e-15,52;CL:0000542,1.18e-14,53;CL:0000051,1.18e-14,53;CL:0000624,3.57e-13,6;CL:0000625,3.57e-12,11;CL:0000898,2.04e-07,3;CL:0002166,3.54e-07,3|ontology_enrichment_development_v019=CL:0000790;2.39e-24;18!CL:0000051;2.95e-08;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0000178;5.52e-12;15!UBERON:0000179;5.52e-12;15!UBERON:0000463;5.52e-12;15!UBERON:0000486;4.12e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.05e-12,15;UBERON:0000179,4.05e-12,15;UBERON:0000463,4.05e-12,15;UBERON:0000365,9.18e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764134057479513,0.492603536699674,1.18066171970519,0.393364276848904,0.383829398097213,0.154816123316076,0,0.6024118375565,0,0,0.426507697462265,0,0,0.802177789880567,0.434021741431704,0.223915474239924,0.32389366601898,0.77272670290256,0,0,0.242584061187816,0,0,0,0,0.512321413058201,0.236482229888585,0.344745680736619,1.29096936716765,1.35426486594342,0,0,0.674170453335254,0.612167784741805,0,0,0,0.199463657621632,0,0.290209238628584,0,0.622822248995575,0.251248665256743,0.521482918420201,0.65156653411535,0,0.736555271975129,0.632924774881769,0,0,0,0,0,0,0,0,0,1.75996244461323,1.63841583378639,1.77901850772711,0.853460445133014,0,0.574752439954483,0.661044872784862,0,0,0,0,0,0,0,2.55722701147983,4.71612915298998,4.72883447698871,3.17654341242288,1.62961133316795,2.8406868344084,0,22.3935018339199,7.36514768687093,14.3997031479354,11.9153700056607,17.5485108024175,10.66486649991,1.15106533222573,2.21080014228679,5.79606171470105,1.18629250529648,0.802622484269139,3.1360657141493,21.7553937979327,19.1610246800961,17.8686271650968,28.8442448902233,8.28270077242652,4.55758417699493,1.90090408889675,5.27012916772205,5.63141089079441,7.49584359314075,7.10331756132051,4.10563998460523,0.201606743224732,0.534880391567015,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93260853163297,2.45471508531751,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,1.64625428112938,0,0.703702806881416,2.03694579348765,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81201501960331,3.69560682037491,2.55195175036296,1.07470227243418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,1.00876629594175,0.788123040807709,0.646882724578552,1.15508732651774,0,0,0,0.335032530668698,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68798433959754,0.431428401637234,1.49418580924822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.40860999515584,0.368323955743585,0,0,0,0,0.231046011313244,0.784349769176855,0,2.11103257785751,0,0,0.431831832204279,0,0.541892875087706,0,1.52925763827023,0.831076008928724,0.895499018888713,0,0,0,0,0,0.103041011647722,0,0,1.14853107599234,1.95018073810956,0,0,0,0,0,0,0,0,0,3.8015530533025,1.53752053892085,2.16941611240793,1.2138933702666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,0,0,0.0941438007767792,2.15252686335615,1.68471475667626,0.886860307073351,3.67557440331135,2.02979043692868,3.0585488285695,2.84823593587081,2.38231775457789,4.11362273086194,1.94541993357815,3.7802200606668,0,0,0,0,0.557409525377156,0,0.142283686696828,1.59426272728822,0,0,0.846694330895531,0.324621940274555,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0.296964680832639,0.614321404198464,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3987 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6616 | |||
|TSSclassifier=S | |||
|UniProt=F8WE10 | |||
|association_with_transcript=21bp_to_ENST00000422797_5end | |||
|coexpression_cluster_id=C854 | |||
|description=CAGE_peak_9_at_LIMS1_5end | |||
|id=chr2:109237750..109237773,+ | |||
|ontology_enrichment_celltype=CL:0000542!6.62e-18!53;CL:0000051!6.62e-18!53;CL:0000838!1.93e-17!52;CL:0000084!6.12e-16!25;CL:0000827!6.12e-16!25;CL:0000791!6.92e-16!18;CL:0000789!6.92e-16!18;CL:0002420!6.92e-16!18;CL:0002419!6.92e-16!18;CL:0000790!6.92e-16!18;CL:0000738!7.45e-13!140;CL:0002087!1.23e-11!119;CL:0000625!7.34e-10!11;CL:0002031!1.70e-09!124;CL:0000037!6.62e-08!172;CL:0000566!6.62e-08!172;CL:0002032!1.31e-07!165;CL:0000837!1.31e-07!165;CL:0000624!4.84e-07!6;CL:0000988!7.83e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.39e-24;18!CL:0000789;2.39e-24;18!CL:0002419;2.39e-24;18!CL:0000084;3.87e-21;25!CL:0000624;4.88e-13;6!CL:0000625;4.45e-12;11!CL:0000542;2.95e-08;53!CL:0000898;2.48e-07;3!CL:0002166;4.52e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.08e-24,18;CL:0000789,2.08e-24,18;CL:0002420,2.08e-24,18;CL:0002419,2.08e-24,18;CL:0000790,2.08e-24,18;CL:0000084,3.27e-21,25;CL:0000827,3.27e-21,25;CL:0000838,4.62e-15,52;CL:0000542,1.18e-14,53;CL:0000051,1.18e-14,53;CL:0000624,3.57e-13,6;CL:0000625,3.57e-12,11;CL:0000898,2.04e-07,3;CL:0002166,3.54e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;2.39e-24;18!CL:0000051;2.95e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.52e-12;15!UBERON:0000179;5.52e-12;15!UBERON:0000463;5.52e-12;15!UBERON:0000486;4.12e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.05e-12,15;UBERON:0000179,4.05e-12,15;UBERON:0000463,4.05e-12,15;UBERON:0000365,9.18e-07,5 | |||
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| |||
|short_description=p9@LIMS1 | |||
}} |
Revision as of 12:54, 12 September 2013
Short description: | p9@LIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_LIMS1_5end |
Coexpression cluster: | C854_argyrophil_CD4_anaplastic_smallcell_nonsmall_seminal_CD8 |
Association with transcript: | 21bp_to_ENST00000422797_5end |
EntrezGene: | LIMS1 |
HGNC: | 6616 |
UniProt: | F8WE10 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.08e-24 | 18 |
alpha-beta T cell | 2.08e-24 | 18 |
immature T cell | 2.08e-24 | 18 |
mature T cell | 2.08e-24 | 18 |
immature alpha-beta T cell | 2.08e-24 | 18 |
T cell | 3.27e-21 | 25 |
pro-T cell | 3.27e-21 | 25 |
lymphoid lineage restricted progenitor cell | 4.62e-15 | 52 |
lymphocyte | 1.18e-14 | 53 |
common lymphoid progenitor | 1.18e-14 | 53 |
CD4-positive, alpha-beta T cell | 3.57e-13 | 6 |
CD8-positive, alpha-beta T cell | 3.57e-12 | 11 |
naive T cell | 2.04e-07 | 3 |
epithelial cell of Malassez | 3.54e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 4.05e-12 | 15 |
haemolymphatic fluid | 4.05e-12 | 15 |
organism substance | 4.05e-12 | 15 |
urothelium | 9.18e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.