FFCP PHASE1:Hg19::chr19:58898180..58898199,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6193|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10426|TSSclassifier=S|UniProt=P46782|association_with_transcript=-436bp_to_ENST00000196551,NM_001009,uc002qsn.2_5end|description=CAGE_peak_3_at_RPS5_5end|id=chr19:58898180..58898199,+|ontology_enrichment_celltype=CL:0000066!1.59e-12!254;CL:0000548!4.01e-11!679;CL:0000004!4.01e-11!679;CL:0000255!4.01e-11!679;CL:0000012!1.54e-10!682;CL:0000222!4.02e-10!119;CL:0002321!5.39e-10!248;CL:0000220!6.11e-10!246;CL:0000359!9.24e-09!32;CL:0000183!6.74e-08!59;CL:0000192!9.22e-08!42;CL:0000514!9.22e-08!42;CL:0000680!1.16e-07!57;CL:0000056!1.16e-07!57;CL:0000355!1.16e-07!57;CL:0000187!2.18e-07!54|ontology_enrichment_celltype_v019=CL:0000359;2.08e-17;32!CL:0000192;2.33e-12;43!CL:0002592;9.48e-09;3!CL:0002539;1.35e-08;10|ontology_enrichment_celltype_v019_2=CL:0000359,6.47e-19,32;CL:0000192,3.15e-16,43;CL:0000514,3.15e-16,43;CL:0000187,5.41e-13,55;CL:0000222,1.26e-12,121;CL:0000680,4.71e-12,58;CL:0000056,4.71e-12,58;CL:0000355,4.71e-12,58;CL:0000393,3.29e-11,61;CL:0000211,3.29e-11,61;CL:0002592,5.52e-09,3;CL:0002539,1.16e-08,10;CL:0002321,3.09e-07,250|ontology_enrichment_development_v019=CL:0000514;2.33e-12;43|ontology_enrichment_disease=DOID:305!6.41e-09!106;DOID:0050687!3.37e-08!143;DOID:14566!3.16e-07!239;DOID:162!9.05e-07!235|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000490!1.41e-09!138;UBERON:0003104!2.85e-09!238;UBERON:0009142!2.85e-09!238;UBERON:0001981!3.71e-08!60;UBERON:0007500!3.71e-08!60;UBERON:0004537!3.71e-08!60;UBERON:0006965!3.71e-08!60;UBERON:0002100!7.45e-08!216;UBERON:0001637!7.97e-08!42;UBERON:0003509!7.97e-08!42;UBERON:0004572!7.97e-08!42;UBERON:0003914!1.77e-07!118;UBERON:0002049!2.95e-07!79;UBERON:0007798!2.95e-07!79;UBERON:0000055!8.65e-07!69|ontology_enrichment_uberon_v019=UBERON:0004573;1.62e-14;33!UBERON:0004571;1.62e-14;33!UBERON:0001637;3.17e-12;42!UBERON:0003509;3.17e-12;42!UBERON:0004572;3.17e-12;42!UBERON:0007500;2.64e-09;56!UBERON:0001981;2.64e-09;56!UBERON:0004537;2.64e-09;56!UBERON:0003498;9.48e-09;3!UBERON:0005985;9.48e-09;3!UBERON:0001621;9.48e-09;3!UBERON:0004237;1.35e-08;10!UBERON:0004695;1.35e-08;10!UBERON:0002111;1.35e-08;10!UBERON:0004178;1.35e-08;10!UBERON:0001135;2.81e-07;15|ontology_enrichment_uberon_v019_2=UBERON:0001637,7.00e-19,42;UBERON:0003509,7.00e-19,42;UBERON:0004572,7.00e-19,42;UBERON:0007500,1.35e-16,59;UBERON:0001981,1.35e-16,59;UBERON:0004537,1.35e-16,59;UBERON:0006965,1.35e-16,59;UBERON:0004573,4.95e-16,33;UBERON:0004571,4.95e-16,33;UBERON:0000055,1.40e-13,68;UBERON:0004872,1.40e-13,83;UBERON:0002049,3.56e-12,78;UBERON:0007798,3.56e-12,78;UBERON:0001134,6.02e-11,62;UBERON:0002036,6.02e-11,62;UBERON:0003082,6.02e-11,62;UBERON:0002385,1.90e-10,64;UBERON:0001015,1.90e-10,64;UBERON:0000383,1.90e-10,64;UBERON:0002329,5.07e-10,71;UBERON:0003059,5.07e-10,71;UBERON:0007282,5.07e-10,71;UBERON:0004290,5.07e-10,71;UBERON:0009618,5.07e-10,71;UBERON:0003077,8.25e-10,72;UBERON:0007285,8.25e-10,72;UBERON:0007503,8.33e-10,78;UBERON:0007524,1.32e-09,73;UBERON:0000490,1.36e-09,148;UBERON:0004535,1.66e-09,109;UBERON:0003914,1.82e-09,117;UBERON:0001009,4.49e-09,112;UBERON:0001621,5.52e-09,3;UBERON:0004237,1.16e-08,10;UBERON:0004695,1.16e-08,10;UBERON:0002111,1.16e-08,10;UBERON:0004178,1.16e-08,10;UBERON:0000486,7.71e-08,83;UBERON:0002100,1.18e-07,199;UBERON:0001135,3.05e-07,15;UBERON:0003104,8.20e-07,160;UBERON:0009142,8.20e-07,160|phase1_expression=0.181678379270557,0,0.422863212287913,0,0.446961094427288,0.872338524100369,0,0.631719873426831,0.261185628199839,0.245733936501509,3.48900583986214,0,0.527533956456907,0.247532705920093,0.662794751455832,3.36162573225888,1.20538905604795,2.19093027116212,1.46379839637152,0.246242116153576,0.816002764977012,0,0,0.273748850145768,0,0,0,0.0787107813136792,0,0,0.464448369948228,3.67768489791571,0.90361775633475,1.47901604066715,0.232401601740905,0.568676929949686,0,0,0,0,0,0,0,0,0,0.242584061187816,0.232429036905685,0,0,0.28769239232215,0,0,0.344745680736619,0.645484683583826,0,0,0,0,0,0,0,0.329851300186716,0,0.426224750532694,0,0.56738522469114,0,0,0.521482918420201,0.434377689410233,0,0,0,0,0,0.419317291016752,0.112328631146495,0,0,0.570025487482497,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0.289803085735052,0,0,0,0,0,0,0.253019692019503,0,0,0.950452044448374,0,0.127986611154418,0,0,0,0,0,0.144824403882799,0,0.670700859703636,0.12786256184353,0.361439152384566,0.50133791063589,0.724232594804119,0,0.486634870302636,0.0945348171640679,0,0.351339142772504,0,0,0,0,0,0,0,0,0,0.198762407366705,1.72046919021225,0,1.13061588384802,0.419499436209906,1.10047216776027,0,0.258416759169329,0,0,2.01414658554573,2.28081631715554,0.488124115096339,0,0,0.0892997282840798,0.44905874525234,0.112611480483322,0,0.949265659568129,0.916008719652036,0,0,0.436094052142534,0,0.25326102332916,0.397227542439656,0.286836620748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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6193 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10426 | |||
|TSSclassifier=S | |||
|UniProt=P46782 | |||
|association_with_transcript=-436bp_to_ENST00000196551,NM_001009,uc002qsn.2_5end | |||
|description=CAGE_peak_3_at_RPS5_5end | |||
|id=chr19:58898180..58898199,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.59e-12!254;CL:0000548!4.01e-11!679;CL:0000004!4.01e-11!679;CL:0000255!4.01e-11!679;CL:0000012!1.54e-10!682;CL:0000222!4.02e-10!119;CL:0002321!5.39e-10!248;CL:0000220!6.11e-10!246;CL:0000359!9.24e-09!32;CL:0000183!6.74e-08!59;CL:0000192!9.22e-08!42;CL:0000514!9.22e-08!42;CL:0000680!1.16e-07!57;CL:0000056!1.16e-07!57;CL:0000355!1.16e-07!57;CL:0000187!2.18e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.08e-17;32!CL:0000192;2.33e-12;43!CL:0002592;9.48e-09;3!CL:0002539;1.35e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,6.47e-19,32;CL:0000192,3.15e-16,43;CL:0000514,3.15e-16,43;CL:0000187,5.41e-13,55;CL:0000222,1.26e-12,121;CL:0000680,4.71e-12,58;CL:0000056,4.71e-12,58;CL:0000355,4.71e-12,58;CL:0000393,3.29e-11,61;CL:0000211,3.29e-11,61;CL:0002592,5.52e-09,3;CL:0002539,1.16e-08,10;CL:0002321,3.09e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000514;2.33e-12;43 | |||
|ontology_enrichment_disease=DOID:305!6.41e-09!106;DOID:0050687!3.37e-08!143;DOID:14566!3.16e-07!239;DOID:162!9.05e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000490!1.41e-09!138;UBERON:0003104!2.85e-09!238;UBERON:0009142!2.85e-09!238;UBERON:0001981!3.71e-08!60;UBERON:0007500!3.71e-08!60;UBERON:0004537!3.71e-08!60;UBERON:0006965!3.71e-08!60;UBERON:0002100!7.45e-08!216;UBERON:0001637!7.97e-08!42;UBERON:0003509!7.97e-08!42;UBERON:0004572!7.97e-08!42;UBERON:0003914!1.77e-07!118;UBERON:0002049!2.95e-07!79;UBERON:0007798!2.95e-07!79;UBERON:0000055!8.65e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.62e-14;33!UBERON:0004571;1.62e-14;33!UBERON:0001637;3.17e-12;42!UBERON:0003509;3.17e-12;42!UBERON:0004572;3.17e-12;42!UBERON:0007500;2.64e-09;56!UBERON:0001981;2.64e-09;56!UBERON:0004537;2.64e-09;56!UBERON:0003498;9.48e-09;3!UBERON:0005985;9.48e-09;3!UBERON:0001621;9.48e-09;3!UBERON:0004237;1.35e-08;10!UBERON:0004695;1.35e-08;10!UBERON:0002111;1.35e-08;10!UBERON:0004178;1.35e-08;10!UBERON:0001135;2.81e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,7.00e-19,42;UBERON:0003509,7.00e-19,42;UBERON:0004572,7.00e-19,42;UBERON:0007500,1.35e-16,59;UBERON:0001981,1.35e-16,59;UBERON:0004537,1.35e-16,59;UBERON:0006965,1.35e-16,59;UBERON:0004573,4.95e-16,33;UBERON:0004571,4.95e-16,33;UBERON:0000055,1.40e-13,68;UBERON:0004872,1.40e-13,83;UBERON:0002049,3.56e-12,78;UBERON:0007798,3.56e-12,78;UBERON:0001134,6.02e-11,62;UBERON:0002036,6.02e-11,62;UBERON:0003082,6.02e-11,62;UBERON:0002385,1.90e-10,64;UBERON:0001015,1.90e-10,64;UBERON:0000383,1.90e-10,64;UBERON:0002329,5.07e-10,71;UBERON:0003059,5.07e-10,71;UBERON:0007282,5.07e-10,71;UBERON:0004290,5.07e-10,71;UBERON:0009618,5.07e-10,71;UBERON:0003077,8.25e-10,72;UBERON:0007285,8.25e-10,72;UBERON:0007503,8.33e-10,78;UBERON:0007524,1.32e-09,73;UBERON:0000490,1.36e-09,148;UBERON:0004535,1.66e-09,109;UBERON:0003914,1.82e-09,117;UBERON:0001009,4.49e-09,112;UBERON:0001621,5.52e-09,3;UBERON:0004237,1.16e-08,10;UBERON:0004695,1.16e-08,10;UBERON:0002111,1.16e-08,10;UBERON:0004178,1.16e-08,10;UBERON:0000486,7.71e-08,83;UBERON:0002100,1.18e-07,199;UBERON:0001135,3.05e-07,15;UBERON:0003104,8.20e-07,160;UBERON:0009142,8.20e-07,160 | |||
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| |||
|short_description=p3@RPS5 | |||
}} |
Revision as of 22:40, 11 September 2013
Short description: | p3@RPS5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_RPS5_5end |
Coexpression cluster: | NA |
Association with transcript: | -436bp_to_ENST00000196551, NM_001009, uc002qsn.2_5end |
EntrezGene: | RPS5 |
HGNC: | 10426 |
UniProt: | P46782 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 6.47e-19 | 32 |
smooth muscle cell | 3.15e-16 | 43 |
smooth muscle myoblast | 3.15e-16 | 43 |
muscle cell | 5.41e-13 | 55 |
mesodermal cell | 1.26e-12 | 121 |
muscle precursor cell | 4.71e-12 | 58 |
myoblast | 4.71e-12 | 58 |
multi-potent skeletal muscle stem cell | 4.71e-12 | 58 |
electrically responsive cell | 3.29e-11 | 61 |
electrically active cell | 3.29e-11 | 61 |
smooth muscle cell of the coronary artery | 5.52e-09 | 3 |
aortic smooth muscle cell | 1.16e-08 | 10 |
embryonic cell | 3.09e-07 | 250 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.