FFCP PHASE1:Hg19::chr19:56116608..56116632,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=S|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1356|description=CAGE_peak_at_chr19:56116608..56116632,-|id=chr19:56116608..56116632,-|ontology_enrichment_celltype=CL:0000860!4.25e-19!45;CL:0002057!1.59e-16!42;CL:0002194!1.23e-12!63;CL:0000576!1.23e-12!63;CL:0000040!1.23e-12!63;CL:0000559!1.23e-12!63;CL:0002009!1.28e-12!65;CL:0000557!5.80e-12!71;CL:0000839!1.36e-11!70;CL:0000763!2.25e-11!112;CL:0000049!2.25e-11!112;CL:0000988!6.92e-10!182;CL:0000766!1.22e-09!76;CL:0002032!1.30e-09!165;CL:0000837!1.30e-09!165;CL:0000037!7.36e-09!172;CL:0000566!7.36e-09!172;CL:0002031!1.81e-08!124;CL:0002087!2.09e-08!119;CL:0000738!4.03e-07!140|ontology_enrichment_celltype_v019=CL:0000860;2.39e-72;33!CL:0002057;2.39e-72;33!CL:0000473;1.92e-51;39!CL:0000234;1.92e-51;39!CL:0000576;2.21e-32;48!CL:0000766;5.63e-19;69!CL:0000763;3.35e-10;100!CL:0002087;1.13e-08;104|ontology_enrichment_celltype_v019_2=CL:0000860,2.35e-62,42;CL:0002057,2.35e-62,42;CL:0000473,6.25e-54,48;CL:0000234,6.25e-54,48;CL:0002194,3.93e-42,59;CL:0000576,3.93e-42,59;CL:0000040,3.93e-42,59;CL:0000559,3.93e-42,59;CL:0002009,1.31e-40,61;CL:0000839,3.37e-37,66;CL:0000557,1.41e-36,67;CL:0000766,1.01e-33,72;CL:0000763,6.11e-23,108;CL:0000049,6.11e-23,108;CL:0002087,2.44e-19,115;CL:0002031,2.49e-18,120;CL:0000738,1.34e-15,136;CL:0002032,1.01e-13,161;CL:0000837,1.01e-13,161;CL:0000037,6.14e-13,168;CL:0000988,5.06e-12,177|ontology_enrichment_development_v019=CL:0002057;2.54e-48;42!CL:0000049;2.91e-07;108|ontology_enrichment_disease=DOID:162!1.88e-16!235;DOID:14566!2.09e-16!239;DOID:305!7.55e-12!106;DOID:0050687!5.00e-11!143;DOID:7!3.88e-08!39|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.15e-12!80;UBERON:0001474!1.52e-12!86;UBERON:0004765!1.65e-10!101;UBERON:0001434!1.65e-10!101;UBERON:0002390!2.69e-10!102;UBERON:0003061!2.69e-10!102;UBERON:0002405!3.48e-09!115;UBERON:0002193!1.15e-08!112|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.14e-34,76;UBERON:0002405,1.11e-32,93;UBERON:0001474,8.78e-32,82;UBERON:0004765,1.59e-28,90;UBERON:0002390,2.85e-28,98;UBERON:0003061,2.85e-28,98;UBERON:0002193,2.05e-27,108;UBERON:0001434,3.52e-25,100;UBERON:0002204,4.76e-13,167;UBERON:0003081,4.24e-12,203|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0.204000691244253,0,0,0,0,0.382067028739756,0,0.314843125254717,0,0,0,0,0,0.369754010166788,0.154934401160603,0,0.293600439334847,0,0,0,0.223915474239924,0,0,0.726991193897824,1.51150377475524,0.242584061187816,1.85943229524548,1.6446715520873,2.16794459626573,1.43846196161075,1.5369642391746,0.47296445977717,0.344745680736619,3.22742341791913,6.77132432971709,0.941211697713023,2.45615535052061,1.34834090667051,0.306083892370903,1.60464513538047,3.83602275479425,1.31940520074686,1.99463657621632,2.98357325372886,1.45104619314292,4.53908179752912,2.4912889959823,1.7587406567972,0.521482918420201,2.82345498116652,3.02699751316684,4.05105399586321,3.16462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0.087834785693126,0.0654895377488563,0,0,0.324547393654683,0,0,0.238490624305342,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0,0,1.00416183829401,0,0,0,0,0,0,0,0.112611480483322,0,0.949265659568129,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0.24666754841716,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0.826606249406124,0,0,0,0,0,0.125118519871964,0,0,0,0.150238058906597,0,0.179389635688862,0.213557388818567,0.211931901159562,0,0.206105058476878,0,0,0,0,0.252433774244115,0.0920498986422993,0.161646056818812,0,0,0.169560592310488,0,0,0,0,0.132529768321485,0.116193942869518,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,1.58040879591855,0.858486162094873,0,0,0,0,0,0,0,0,0,0.985326475791887,0,0,0,0.12624243342638,0,0.381988425558278,0,0,0,0.600686115687835,0,0,0,0,0,3.57656445851882,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0.112085143993527,0,0.215627574859517,0,0,0,0,0,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0.195801157462741,0,0,0,0,2.42502057157008,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.604297247958111,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0.096670718292122,0.154048617114644,0,0,0,0,0,0.623224249527161,0,0,0,0,0,0,0,0,0,0,0,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0.185803175125719,0.28853842595289,0.2134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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=S | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1356 | |||
|description=CAGE_peak_at_chr19:56116608..56116632,- | |||
|id=chr19:56116608..56116632,- | |||
|ontology_enrichment_celltype=CL:0000860!4.25e-19!45;CL:0002057!1.59e-16!42;CL:0002194!1.23e-12!63;CL:0000576!1.23e-12!63;CL:0000040!1.23e-12!63;CL:0000559!1.23e-12!63;CL:0002009!1.28e-12!65;CL:0000557!5.80e-12!71;CL:0000839!1.36e-11!70;CL:0000763!2.25e-11!112;CL:0000049!2.25e-11!112;CL:0000988!6.92e-10!182;CL:0000766!1.22e-09!76;CL:0002032!1.30e-09!165;CL:0000837!1.30e-09!165;CL:0000037!7.36e-09!172;CL:0000566!7.36e-09!172;CL:0002031!1.81e-08!124;CL:0002087!2.09e-08!119;CL:0000738!4.03e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.39e-72;33!CL:0002057;2.39e-72;33!CL:0000473;1.92e-51;39!CL:0000234;1.92e-51;39!CL:0000576;2.21e-32;48!CL:0000766;5.63e-19;69!CL:0000763;3.35e-10;100!CL:0002087;1.13e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.35e-62,42;CL:0002057,2.35e-62,42;CL:0000473,6.25e-54,48;CL:0000234,6.25e-54,48;CL:0002194,3.93e-42,59;CL:0000576,3.93e-42,59;CL:0000040,3.93e-42,59;CL:0000559,3.93e-42,59;CL:0002009,1.31e-40,61;CL:0000839,3.37e-37,66;CL:0000557,1.41e-36,67;CL:0000766,1.01e-33,72;CL:0000763,6.11e-23,108;CL:0000049,6.11e-23,108;CL:0002087,2.44e-19,115;CL:0002031,2.49e-18,120;CL:0000738,1.34e-15,136;CL:0002032,1.01e-13,161;CL:0000837,1.01e-13,161;CL:0000037,6.14e-13,168;CL:0000988,5.06e-12,177 | |||
|ontology_enrichment_development_v019=CL:0002057;2.54e-48;42!CL:0000049;2.91e-07;108 | |||
|ontology_enrichment_disease=DOID:162!1.88e-16!235;DOID:14566!2.09e-16!239;DOID:305!7.55e-12!106;DOID:0050687!5.00e-11!143;DOID:7!3.88e-08!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.15e-12!80;UBERON:0001474!1.52e-12!86;UBERON:0004765!1.65e-10!101;UBERON:0001434!1.65e-10!101;UBERON:0002390!2.69e-10!102;UBERON:0003061!2.69e-10!102;UBERON:0002405!3.48e-09!115;UBERON:0002193!1.15e-08!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.14e-34,76;UBERON:0002405,1.11e-32,93;UBERON:0001474,8.78e-32,82;UBERON:0004765,1.59e-28,90;UBERON:0002390,2.85e-28,98;UBERON:0003061,2.85e-28,98;UBERON:0002193,2.05e-27,108;UBERON:0001434,3.52e-25,100;UBERON:0002204,4.76e-13,167;UBERON:0003081,4.24e-12,203 | |||
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| |||
|short_description=p@chr19:56116608..56116632,- | |||
}} |
Revision as of 22:30, 11 September 2013
Short description: | p@chr19:56116608..56116632, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:56116608..56116632, - |
Coexpression cluster: | C1356_CD14_thymus_Hodgkin_NK_anaplastic_hepatoblastoma_lymphangiectasia |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.35e-62 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.35e-62 | 42 |
defensive cell | 6.25e-54 | 48 |
phagocyte | 6.25e-54 | 48 |
monopoietic cell | 3.93e-42 | 59 |
monocyte | 3.93e-42 | 59 |
monoblast | 3.93e-42 | 59 |
promonocyte | 3.93e-42 | 59 |
macrophage dendritic cell progenitor | 1.31e-40 | 61 |
myeloid lineage restricted progenitor cell | 3.37e-37 | 66 |
granulocyte monocyte progenitor cell | 1.41e-36 | 67 |
myeloid leukocyte | 1.01e-33 | 72 |
myeloid cell | 6.11e-23 | 108 |
common myeloid progenitor | 6.11e-23 | 108 |
nongranular leukocyte | 2.44e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 2.49e-18 | 120 |
leukocyte | 1.34e-15 | 136 |
hematopoietic oligopotent progenitor cell | 1.01e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.01e-13 | 161 |
hematopoietic stem cell | 6.14e-13 | 168 |
hematopoietic cell | 5.06e-12 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.14e-34 | 76 |
immune system | 1.11e-32 | 93 |
bone element | 8.78e-32 | 82 |
skeletal element | 1.59e-28 | 90 |
hematopoietic system | 2.85e-28 | 98 |
blood island | 2.85e-28 | 98 |
hemolymphoid system | 2.05e-27 | 108 |
skeletal system | 3.52e-25 | 100 |
musculoskeletal system | 4.76e-13 | 167 |
lateral plate mesoderm | 4.24e-12 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.