FFCP PHASE1:Hg19::chr19:55897699..55897724,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6158|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10330|TSSclassifier=S|UniProt=B4DEP9,Q59F34|association_with_transcript=0bp_to_ENST00000426763,ENST00000558131,ENST00000558752,uc002qkw.1_5end|description=CAGE_peak_3_at_RPL28_5end|id=chr19:55897699..55897724,+|ontology_enrichment_celltype=CL:0002057!1.33e-25!42;CL:0000860!2.40e-24!45;CL:0000839!3.25e-15!70;CL:0000557!7.16e-15!71;CL:0002009!2.72e-14!65;CL:0002194!2.70e-13!63;CL:0000576!2.70e-13!63;CL:0000040!2.70e-13!63;CL:0000559!2.70e-13!63;CL:0002031!1.43e-12!124;CL:0000766!3.25e-12!76;CL:0000738!5.95e-11!140;CL:0002087!2.89e-10!119;CL:0000763!4.20e-09!112;CL:0000049!4.20e-09!112;CL:0002032!2.00e-08!165;CL:0000837!2.00e-08!165;CL:0000037!4.72e-08!172;CL:0000566!4.72e-08!172;CL:0000988!1.26e-07!182|ontology_enrichment_celltype_v019=CL:0000860;1.62e-47;33!CL:0002057;1.62e-47;33!CL:0000473;3.65e-35;39!CL:0000234;3.65e-35;39!CL:0000576;4.05e-30;48!CL:0000766;3.09e-21;69!CL:0000763;1.51e-10;100!CL:0002087;3.84e-09;104!CL:0000738;1.99e-08;136!CL:0000453;2.23e-08;5!CL:0000197;4.24e-07;6!CL:0000098;4.24e-07;6!CL:0002167;4.24e-07;6|ontology_enrichment_celltype_v019_2=CL:0000860,4.57e-56,42;CL:0002057,4.57e-56,42;CL:0000473,7.67e-53,48;CL:0000234,7.67e-53,48;CL:0000557,1.59e-43,67;CL:0002009,2.52e-42,61;CL:0000839,6.79e-42,66;CL:0002194,1.36e-39,59;CL:0000576,1.36e-39,59;CL:0000040,1.36e-39,59;CL:0000559,1.36e-39,59;CL:0000766,2.99e-39,72;CL:0000763,1.74e-32,108;CL:0000049,1.74e-32,108;CL:0000738,1.39e-29,136;CL:0002031,1.00e-28,120;CL:0002032,1.76e-24,161;CL:0000837,1.76e-24,161;CL:0002087,4.96e-24,115;CL:0000037,9.95e-24,168;CL:0000988,1.22e-21,177;CL:0000453,1.09e-08,5;CL:0000034,1.85e-08,441;CL:0000048,4.68e-08,427;CL:0000723,1.11e-07,433;CL:0000134,2.41e-07,354;CL:0002320,6.82e-07,361;CL:0002393,8.77e-07,9;CL:0002397,8.77e-07,9;CL:0000197,9.40e-07,6;CL:0000098,9.40e-07,6;CL:0002167,9.40e-07,6|ontology_enrichment_development_v019=CL:0002057;8.82e-40;42!CL:0000049;5.41e-11;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.26e-12!80;UBERON:0001474!5.05e-12!86;UBERON:0004765!1.12e-10!101;UBERON:0001434!1.12e-10!101;UBERON:0002390!1.26e-10!102;UBERON:0003061!1.26e-10!102;UBERON:0002193!2.17e-09!112;UBERON:0002204!1.04e-07!167|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.91e-37,76;UBERON:0001474,4.94e-33,82;UBERON:0004765,3.62e-32,90;UBERON:0002405,5.99e-29,93;UBERON:0002390,4.14e-28,98;UBERON:0003061,4.14e-28,98;UBERON:0001434,1.58e-27,100;UBERON:0002193,3.29e-24,108;UBERON:0002204,1.80e-18,167;UBERON:0003081,2.32e-12,203|phase1_expression=0.363356758541113,0.428201047781966,0.986680828671798,0,0,0.872338524100369,2.53299878168311,0.631719873426831,0,0.245733936501509,0.697801167972428,0.436882744260345,0.527533956456907,0.866364470720326,0,3.36162573225888,1.20538905604795,2.19093027116212,1.46379839637152,0.123121058076788,0,0.313454721478088,0,0.273748850145768,0,0.458480434487708,0.0821005894499457,0.0787107813136792,1.18009283054671,0,1.70297735647684,0,0,0,0.387336002901508,0,0.587200878669695,0.553995408531877,0.401088894940283,0,0,0,0,3.48955773070955,5.29026321164333,2.18325655069035,2.32429036905685,2.05583944010913,4.02618282163635,2.3015391385772,3.07392847834921,6.3850202069918,1.03423704220986,0.645484683583826,1.35426486594342,3.20011977222428,6.27684145133045,4.49446968890169,4.89734227793444,4.17207735198922,2.55734850319616,2.30895910130701,2.39356389145958,2.98357325372886,4.93355705668593,3.97169657283798,3.73693349397345,3.26623264833766,2.08593167368081,5.42972111762792,3.63239701580021,6.99727508376373,6.64571013625857,4.22510572623884,3.18906449947565,1.88692780957538,2.47122988522289,3.45406853535464,3.2145117339416,1.42506371870624,7.16100037916724,1.46131323011707,0,1.09227722252426,0,0.426730222566507,0,0,0.661044872784862,0,0,0.587237189370939,0,0,1.12101712596307,1.31692042387539,0.196709770113833,0.393010762749165,0,5.85152733867373,2.28145586643513,2.36723902867367,0,5.68193330114385,5.89211814949674,2.87994062958707,4.87446954777028,1.28091319725675,0.910415432919148,1.64437904603676,1.10540007114339,4.05724320029073,5.19002971067211,8.02622484269139,2.09071047609954,3.62589896632212,1.53288197440768,0.34362744548263,5.06039384039006,1.27426165729639,0,0,1.35517607169996,1.02389288923535,0,1.18388626022008,0,0.403213486449465,0.534880391567015,0,0,0.670700859703636,2.68511379871414,0.361439152384566,0,0.144846518960824,0,0,0.283604451492204,0,0.175669571386252,0.130979075497713,0.364295288292542,0,0,0,0.132957960518865,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0.24406205754817,0.367663080345869,0.81014194788176,0.357198913136319,0,0,1.53316637465883,0,0,0,0,0,0,1.13967460498122,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0.24666754841716,0,0,0,0.302714855289863,0,0,0,0,0.149448680551801,0.117434498643765,0,0,0.20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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6158 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10330 | |||
|TSSclassifier=S | |||
|UniProt=B4DEP9,Q59F34 | |||
|association_with_transcript=0bp_to_ENST00000426763,ENST00000558131,ENST00000558752,uc002qkw.1_5end | |||
|description=CAGE_peak_3_at_RPL28_5end | |||
|id=chr19:55897699..55897724,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.33e-25!42;CL:0000860!2.40e-24!45;CL:0000839!3.25e-15!70;CL:0000557!7.16e-15!71;CL:0002009!2.72e-14!65;CL:0002194!2.70e-13!63;CL:0000576!2.70e-13!63;CL:0000040!2.70e-13!63;CL:0000559!2.70e-13!63;CL:0002031!1.43e-12!124;CL:0000766!3.25e-12!76;CL:0000738!5.95e-11!140;CL:0002087!2.89e-10!119;CL:0000763!4.20e-09!112;CL:0000049!4.20e-09!112;CL:0002032!2.00e-08!165;CL:0000837!2.00e-08!165;CL:0000037!4.72e-08!172;CL:0000566!4.72e-08!172;CL:0000988!1.26e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.62e-47;33!CL:0002057;1.62e-47;33!CL:0000473;3.65e-35;39!CL:0000234;3.65e-35;39!CL:0000576;4.05e-30;48!CL:0000766;3.09e-21;69!CL:0000763;1.51e-10;100!CL:0002087;3.84e-09;104!CL:0000738;1.99e-08;136!CL:0000453;2.23e-08;5!CL:0000197;4.24e-07;6!CL:0000098;4.24e-07;6!CL:0002167;4.24e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.57e-56,42;CL:0002057,4.57e-56,42;CL:0000473,7.67e-53,48;CL:0000234,7.67e-53,48;CL:0000557,1.59e-43,67;CL:0002009,2.52e-42,61;CL:0000839,6.79e-42,66;CL:0002194,1.36e-39,59;CL:0000576,1.36e-39,59;CL:0000040,1.36e-39,59;CL:0000559,1.36e-39,59;CL:0000766,2.99e-39,72;CL:0000763,1.74e-32,108;CL:0000049,1.74e-32,108;CL:0000738,1.39e-29,136;CL:0002031,1.00e-28,120;CL:0002032,1.76e-24,161;CL:0000837,1.76e-24,161;CL:0002087,4.96e-24,115;CL:0000037,9.95e-24,168;CL:0000988,1.22e-21,177;CL:0000453,1.09e-08,5;CL:0000034,1.85e-08,441;CL:0000048,4.68e-08,427;CL:0000723,1.11e-07,433;CL:0000134,2.41e-07,354;CL:0002320,6.82e-07,361;CL:0002393,8.77e-07,9;CL:0002397,8.77e-07,9;CL:0000197,9.40e-07,6;CL:0000098,9.40e-07,6;CL:0002167,9.40e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;8.82e-40;42!CL:0000049;5.41e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.26e-12!80;UBERON:0001474!5.05e-12!86;UBERON:0004765!1.12e-10!101;UBERON:0001434!1.12e-10!101;UBERON:0002390!1.26e-10!102;UBERON:0003061!1.26e-10!102;UBERON:0002193!2.17e-09!112;UBERON:0002204!1.04e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.91e-37,76;UBERON:0001474,4.94e-33,82;UBERON:0004765,3.62e-32,90;UBERON:0002405,5.99e-29,93;UBERON:0002390,4.14e-28,98;UBERON:0003061,4.14e-28,98;UBERON:0001434,1.58e-27,100;UBERON:0002193,3.29e-24,108;UBERON:0002204,1.80e-18,167;UBERON:0003081,2.32e-12,203 | |||
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| |||
|short_description=p3@RPL28 | |||
}} |
Revision as of 22:28, 11 September 2013
Short description: | p3@RPL28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_RPL28_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000426763, ENST00000558131, ENST00000558752, uc002qkw.1_5end |
EntrezGene: | RPL28 |
HGNC: | 10330 |
UniProt: | B4DEP9Q59F34 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.91e-37 | 76 |
bone element | 4.94e-33 | 82 |
skeletal element | 3.62e-32 | 90 |
immune system | 5.99e-29 | 93 |
hematopoietic system | 4.14e-28 | 98 |
blood island | 4.14e-28 | 98 |
skeletal system | 1.58e-27 | 100 |
hemolymphoid system | 3.29e-24 | 108 |
musculoskeletal system | 1.80e-18 | 167 |
lateral plate mesoderm | 2.32e-12 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.