FFCP PHASE1:Hg19::chr19:52298383..52298398,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2359|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3828|TSSclassifier=S|UniProt=P25089,Q6L5J4|association_with_transcript=-12bp_to_ENST00000339223,NM_002030,uc002pxt.1_5end|coexpression_cluster_id=C847|description=CAGE_peak_2_at_FPR3_5end|id=chr19:52298383..52298398,+|ontology_enrichment_celltype=CL:0000557!3.34e-47!71;CL:0002009!3.23e-46!65;CL:0000839!6.42e-46!70;CL:0002194!6.60e-46!63;CL:0000576!6.60e-46!63;CL:0000040!6.60e-46!63;CL:0000559!6.60e-46!63;CL:0000766!7.22e-41!76;CL:0002057!6.84e-40!42;CL:0000860!2.49e-36!45;CL:0000763!1.60e-33!112;CL:0000049!1.60e-33!112;CL:0002031!1.52e-24!124;CL:0000738!1.18e-23!140;CL:0002087!1.73e-22!119;CL:0002032!1.05e-20!165;CL:0000837!1.05e-20!165;CL:0000037!6.85e-20!172;CL:0000566!6.85e-20!172;CL:0000988!1.07e-17!182;CL:0000990!6.06e-08!8|ontology_enrichment_celltype_v019=CL:0000473;2.05e-79;39!CL:0000234;2.05e-79;39!CL:0000860;2.53e-72;33!CL:0002057;2.53e-72;33!CL:0000576;1.63e-46;48!CL:0000766;2.08e-35;69!CL:0000235;2.10e-24;6!CL:0000763;3.64e-20;100!CL:0000738;1.95e-14;136!CL:0002619;1.23e-12;3!CL:0002087;1.97e-11;104!CL:0000840;4.07e-11;5!CL:0000990;7.05e-11;8!CL:0000451;7.73e-09;10!CL:0000988;2.80e-07;177!CL:0000097;4.37e-07;5!CL:0000219;5.79e-07;193|ontology_enrichment_celltype_v019_2=CL:0000557,1.76e-102,67;CL:0000839,2.95e-99,66;CL:0002009,6.54e-98,61;CL:0002194,2.10e-96,59;CL:0000576,2.10e-96,59;CL:0000040,2.10e-96,59;CL:0000559,2.10e-96,59;CL:0000766,2.58e-90,72;CL:0000473,2.08e-86,48;CL:0000234,2.08e-86,48;CL:0000763,2.69e-66,108;CL:0000049,2.69e-66,108;CL:0000860,2.12e-65,42;CL:0002057,2.12e-65,42;CL:0002031,4.99e-56,120;CL:0000738,9.56e-51,136;CL:0002087,6.76e-48,115;CL:0002032,1.88e-43,161;CL:0000837,1.88e-43,161;CL:0000037,3.08e-41,168;CL:0000988,1.20e-38,177;CL:0000235,1.98e-24,6;CL:0000134,2.51e-14,354;CL:0002320,7.50e-14,361;CL:0002619,1.28e-12,3;CL:0000219,3.51e-12,386;CL:0000840,4.18e-11,5;CL:0001029,4.18e-11,5;CL:0000990,7.36e-11,8;CL:0000048,3.88e-10,427;CL:0000723,7.43e-10,433;CL:0000034,1.72e-09,441;CL:0000451,8.00e-09,10;CL:0000097,3.29e-07,5;CL:0002028,3.29e-07,5|ontology_enrichment_development_v019=CL:0002057;1.17e-49;42!CL:0000049;4.56e-22;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!8.03e-40!80;UBERON:0002390!4.64e-37!102;UBERON:0003061!4.64e-37!102;UBERON:0001474!9.01e-36!86;UBERON:0002193!1.23e-34!112;UBERON:0002405!1.33e-30!115;UBERON:0004765!5.90e-29!101;UBERON:0001434!5.90e-29!101;UBERON:0007023!6.08e-22!115;UBERON:0002204!6.07e-15!167;UBERON:0003081!4.28e-14!216;UBERON:0000062!1.73e-10!511;UBERON:0000467!8.52e-07!625;UBERON:0000480!9.81e-07!626|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.24e-89,76;UBERON:0001474,3.22e-82,82;UBERON:0002405,6.88e-75,93;UBERON:0004765,3.85e-74,90;UBERON:0002390,1.30e-70,98;UBERON:0003061,1.30e-70,98;UBERON:0001434,7.67e-66,100;UBERON:0002193,3.07e-63,108;UBERON:0002204,1.07e-35,167;UBERON:0003081,9.06e-31,203;UBERON:0000926,2.64e-16,315;UBERON:0004120,2.64e-16,315;UBERON:0006603,2.64e-16,315;UBERON:0002384,4.05e-14,371|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,13.4349284543955,8.09734165047449,7.21211589375722,23.699912921069,23.4283085087062,16.9808842831471,13.0160260667183,6.57868620834921,5.88442104700697,2.01384674625505,3.84241059793651,1.41889337933151,1.37898272294647,2.5819387343353,1.35426486594342,18.4477492751753,24.0157412050904,16.4048143644912,15.9163624032869,13.4790191371959,6.39337125799041,6.59702600373432,7.97854630486527,5.54092175692502,2.90209238628584,2.26954089876456,0.622822248995575,4.52247597462138,1.5644487552606,1.08594422352558,0.605399502633369,2.57794345191295,0.632924774881769,0.633765858935825,1.06302149982522,0.419317291016752,0.561643155732475,0.750884464207532,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.150575119077773,0,1.24930726552346,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785874452986276,0,0,20.7710331938997,19.5025305775179,19.4118622357543,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.6217006087397,13.806251643215,12.6336487945419,0,0,0,0,0,0,0,0,2.69526550203004,1.72943944100354,1.38866676769018,0,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0,23.1085183218262,18.5835123829887,14.7583757638122,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2359 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3828 | |||
|TSSclassifier=S | |||
|UniProt=P25089,Q6L5J4 | |||
|association_with_transcript=-12bp_to_ENST00000339223,NM_002030,uc002pxt.1_5end | |||
|coexpression_cluster_id=C847 | |||
|description=CAGE_peak_2_at_FPR3_5end | |||
|id=chr19:52298383..52298398,+ | |||
|ontology_enrichment_celltype=CL:0000557!3.34e-47!71;CL:0002009!3.23e-46!65;CL:0000839!6.42e-46!70;CL:0002194!6.60e-46!63;CL:0000576!6.60e-46!63;CL:0000040!6.60e-46!63;CL:0000559!6.60e-46!63;CL:0000766!7.22e-41!76;CL:0002057!6.84e-40!42;CL:0000860!2.49e-36!45;CL:0000763!1.60e-33!112;CL:0000049!1.60e-33!112;CL:0002031!1.52e-24!124;CL:0000738!1.18e-23!140;CL:0002087!1.73e-22!119;CL:0002032!1.05e-20!165;CL:0000837!1.05e-20!165;CL:0000037!6.85e-20!172;CL:0000566!6.85e-20!172;CL:0000988!1.07e-17!182;CL:0000990!6.06e-08!8 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.05e-79;39!CL:0000234;2.05e-79;39!CL:0000860;2.53e-72;33!CL:0002057;2.53e-72;33!CL:0000576;1.63e-46;48!CL:0000766;2.08e-35;69!CL:0000235;2.10e-24;6!CL:0000763;3.64e-20;100!CL:0000738;1.95e-14;136!CL:0002619;1.23e-12;3!CL:0002087;1.97e-11;104!CL:0000840;4.07e-11;5!CL:0000990;7.05e-11;8!CL:0000451;7.73e-09;10!CL:0000988;2.80e-07;177!CL:0000097;4.37e-07;5!CL:0000219;5.79e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,1.76e-102,67;CL:0000839,2.95e-99,66;CL:0002009,6.54e-98,61;CL:0002194,2.10e-96,59;CL:0000576,2.10e-96,59;CL:0000040,2.10e-96,59;CL:0000559,2.10e-96,59;CL:0000766,2.58e-90,72;CL:0000473,2.08e-86,48;CL:0000234,2.08e-86,48;CL:0000763,2.69e-66,108;CL:0000049,2.69e-66,108;CL:0000860,2.12e-65,42;CL:0002057,2.12e-65,42;CL:0002031,4.99e-56,120;CL:0000738,9.56e-51,136;CL:0002087,6.76e-48,115;CL:0002032,1.88e-43,161;CL:0000837,1.88e-43,161;CL:0000037,3.08e-41,168;CL:0000988,1.20e-38,177;CL:0000235,1.98e-24,6;CL:0000134,2.51e-14,354;CL:0002320,7.50e-14,361;CL:0002619,1.28e-12,3;CL:0000219,3.51e-12,386;CL:0000840,4.18e-11,5;CL:0001029,4.18e-11,5;CL:0000990,7.36e-11,8;CL:0000048,3.88e-10,427;CL:0000723,7.43e-10,433;CL:0000034,1.72e-09,441;CL:0000451,8.00e-09,10;CL:0000097,3.29e-07,5;CL:0002028,3.29e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;1.17e-49;42!CL:0000049;4.56e-22;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.03e-40!80;UBERON:0002390!4.64e-37!102;UBERON:0003061!4.64e-37!102;UBERON:0001474!9.01e-36!86;UBERON:0002193!1.23e-34!112;UBERON:0002405!1.33e-30!115;UBERON:0004765!5.90e-29!101;UBERON:0001434!5.90e-29!101;UBERON:0007023!6.08e-22!115;UBERON:0002204!6.07e-15!167;UBERON:0003081!4.28e-14!216;UBERON:0000062!1.73e-10!511;UBERON:0000467!8.52e-07!625;UBERON:0000480!9.81e-07!626 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.24e-89,76;UBERON:0001474,3.22e-82,82;UBERON:0002405,6.88e-75,93;UBERON:0004765,3.85e-74,90;UBERON:0002390,1.30e-70,98;UBERON:0003061,1.30e-70,98;UBERON:0001434,7.67e-66,100;UBERON:0002193,3.07e-63,108;UBERON:0002204,1.07e-35,167;UBERON:0003081,9.06e-31,203;UBERON:0000926,2.64e-16,315;UBERON:0004120,2.64e-16,315;UBERON:0006603,2.64e-16,315;UBERON:0002384,4.05e-14,371 | |||
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|short_description=p2@FPR3 | |||
}} |
Revision as of 22:08, 11 September 2013
Short description: | p2@FPR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_FPR3_5end |
Coexpression cluster: | C847_Monocytederived_CD14_Macrophage_Dendritic_immature_adipose_lung |
Association with transcript: | -12bp_to_ENST00000339223, NM_002030, uc002pxt.1_5end |
EntrezGene: | FPR3 |
HGNC: | 3828 |
UniProt: | P25089Q6L5J4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.24e-89 | 76 |
bone element | 3.22e-82 | 82 |
immune system | 6.88e-75 | 93 |
skeletal element | 3.85e-74 | 90 |
hematopoietic system | 1.30e-70 | 98 |
blood island | 1.30e-70 | 98 |
skeletal system | 7.67e-66 | 100 |
hemolymphoid system | 3.07e-63 | 108 |
musculoskeletal system | 1.07e-35 | 167 |
lateral plate mesoderm | 9.06e-31 | 203 |
mesoderm | 2.64e-16 | 315 |
mesoderm-derived structure | 2.64e-16 | 315 |
presumptive mesoderm | 2.64e-16 | 315 |
connective tissue | 4.05e-14 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.