FFCP PHASE1:Hg19::chr19:48830069..48830089,+: Difference between revisions
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{{FFCP | 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2816,0,0,1.96526301012116,0.147856086217045,0.0675375846183947,0,0,0.126831620387814,0,0,1.48863353516788,0.703484977438482,0,0,0,0,0,0.266107110487916,0.230467975111559,1.71488009437418,0,0,0.945550727071746,0.222462803784138,1.02041020705668,0,0,3.65263488203798,1.07963795609311,1.9110067515482,0.929195074296532,0,0.929931402945002,1.04314963381548,1.60342272946051,1.24329698497822,1.87790324803345,0,0.430227358820278,1.30165200803622,1.44862788090568,0.423387050190929,0,3.1020638566432,0.955538938977433,0,0,0,0,0.307988420568741,5.799072156691,0.485710993059139,0,0,0.118920090777569,0,0,0,0.231522474323834,0.874238242015829,0,0.490296643507811,0,0.392616934229891,0.891139200981258,0.4226557275834,2.0391253762538,0.375935671919414,0.45120521581504,0.499705779624645,0,0.352894871715692,0.0802413666891683,0,0.458729283404541,0.286679166302903,0,0.0679914901909147,0,0,2.60396512716726,3.23522940041993,5.62414530760926,0.378499274505237,0,1.26698501011437,0.203977659483963,0,0,0.250707539292375,0.833565680400634,0.803892390468535,0,0,0.213233981900981,0.476128862927481,0.322944549180031,0.248298857183432,0.897054900644907,0.0636471582781649,0.202117188958219,0.653150243690884,0.342233301085281,0.26940821205835,0.358611026963382,0.332660356546013,0,1.81436487992116,0,0,2.34640942403454,1.4668973301944,0.406896178315738,0,0.402547587182052,0|short_description=p5@EMP3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=2014 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=3335 | |||
|TSSclassifier=S | |||
|UniProt=P54852 | |||
|association_with_transcript=-9bp_to_X94771_5end | |||
|description=CAGE_peak_5_at_EMP3_5end | |||
|id=chr19:48830069..48830089,+ | |||
|ontology_enrichment_celltype=CL:0000048!3.59e-19!430;CL:0000723!1.34e-18!436;CL:0000034!9.53e-17!444;CL:0000055!3.13e-16!180;CL:0002371!6.93e-15!591;CL:0002057!5.57e-14!42;CL:0000860!1.06e-13!45;CL:0002320!3.56e-12!365;CL:0000144!4.11e-12!625;CL:0000680!1.86e-11!57;CL:0000056!1.86e-11!57;CL:0000355!1.86e-11!57;CL:0000187!3.51e-11!54;CL:0000183!3.72e-11!59;CL:0000192!5.44e-11!42;CL:0000514!5.44e-11!42;CL:0000134!6.31e-11!358;CL:0000003!1.12e-10!722;CL:0000359!2.31e-10!32;CL:0000219!5.14e-10!390;CL:0000839!5.97e-10!70;CL:0000557!7.18e-10!71;CL:0000393!1.19e-09!60;CL:0000211!1.19e-09!60;CL:0002009!2.47e-09!65;CL:0002194!3.17e-09!63;CL:0000576!3.17e-09!63;CL:0000040!3.17e-09!63;CL:0000559!3.17e-09!63;CL:0000766!2.64e-08!76;CL:0000548!1.20e-07!679;CL:0000004!1.20e-07!679;CL:0000255!1.20e-07!679;CL:0000012!3.55e-07!682;CL:0000057!7.83e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.45e-11;32!CL:0000860;4.88e-11;33!CL:0002057;4.88e-11;33!CL:0000192;1.17e-09;43!CL:0000473;1.85e-08;39!CL:0000234;1.85e-08;39!CL:0000576;2.51e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.16e-18,427;CL:0000723,1.14e-17,433;CL:0000034,4.87e-16,441;CL:0000860,1.61e-15,42;CL:0002057,1.61e-15,42;CL:0000473,1.71e-14,48;CL:0000234,1.71e-14,48;CL:0000192,2.76e-12,43;CL:0000514,2.76e-12,43;CL:0002320,1.89e-11,361;CL:0000680,1.95e-11,58;CL:0000056,1.95e-11,58;CL:0000355,1.95e-11,58;CL:0000359,2.77e-11,32;CL:0000187,3.53e-11,55;CL:0000134,4.01e-10,354;CL:0000557,9.47e-10,67;CL:0002009,1.39e-09,61;CL:0002194,1.90e-09,59;CL:0000576,1.90e-09,59;CL:0000040,1.90e-09,59;CL:0000559,1.90e-09,59;CL:0000839,3.17e-09,66;CL:0000393,3.73e-09,61;CL:0000211,3.73e-09,61;CL:0000219,5.81e-09,386;CL:0000766,4.14e-08,72 | |||
|ontology_enrichment_development_v019=CL:0002057;1.56e-11;42!CL:0000514;1.17e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!8.09e-23!167;UBERON:0003081!3.64e-17!216;UBERON:0000914!3.07e-13!83;UBERON:0002329!3.07e-13!83;UBERON:0003077!3.07e-13!83;UBERON:0003059!3.07e-13!83;UBERON:0007282!3.07e-13!83;UBERON:0009618!3.07e-13!83;UBERON:0007285!3.07e-13!83;UBERON:0002384!1.58e-12!375;UBERON:0004290!2.98e-12!70;UBERON:0000926!1.16e-11!448;UBERON:0004120!1.16e-11!448;UBERON:0006603!1.16e-11!448;UBERON:0004765!3.00e-11!101;UBERON:0001434!3.00e-11!101;UBERON:0001134!4.11e-11!61;UBERON:0002036!4.11e-11!61;UBERON:0003082!4.11e-11!61;UBERON:0002371!5.01e-11!80;UBERON:0001474!9.13e-11!86;UBERON:0002385!1.89e-10!63;UBERON:0001015!1.89e-10!63;UBERON:0000383!1.89e-10!63;UBERON:0002390!5.38e-10!102;UBERON:0003061!5.38e-10!102;UBERON:0001637!6.64e-10!42;UBERON:0003509!6.64e-10!42;UBERON:0004572!6.64e-10!42;UBERON:0000486!6.07e-09!82;UBERON:0004573!1.31e-07!33;UBERON:0004571!1.31e-07!33;UBERON:0002193!1.36e-07!112;UBERON:0004872!8.73e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.97e-07;42!UBERON:0003509;2.97e-07;42!UBERON:0004572;2.97e-07;42!UBERON:0004573;7.53e-07;33!UBERON:0004571;7.53e-07;33 | |||
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| |||
|short_description=p5@EMP3 | |||
}} |
Revision as of 21:35, 11 September 2013
Short description: | p5@EMP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_EMP3_5end |
Coexpression cluster: | NA |
Association with transcript: | -9bp_to_X94771_5end |
EntrezGene: | EMP3 |
HGNC: | 3335 |
UniProt: | P54852 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 2.16e-18 | 427 |
somatic stem cell | 1.14e-17 | 433 |
stem cell | 4.87e-16 | 441 |
classical monocyte | 1.61e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.61e-15 | 42 |
defensive cell | 1.71e-14 | 48 |
phagocyte | 1.71e-14 | 48 |
smooth muscle cell | 2.76e-12 | 43 |
smooth muscle myoblast | 2.76e-12 | 43 |
connective tissue cell | 1.89e-11 | 361 |
muscle precursor cell | 1.95e-11 | 58 |
myoblast | 1.95e-11 | 58 |
multi-potent skeletal muscle stem cell | 1.95e-11 | 58 |
vascular associated smooth muscle cell | 2.77e-11 | 32 |
muscle cell | 3.53e-11 | 55 |
mesenchymal cell | 4.01e-10 | 354 |
granulocyte monocyte progenitor cell | 9.47e-10 | 67 |
macrophage dendritic cell progenitor | 1.39e-09 | 61 |
monopoietic cell | 1.90e-09 | 59 |
monocyte | 1.90e-09 | 59 |
monoblast | 1.90e-09 | 59 |
promonocyte | 1.90e-09 | 59 |
myeloid lineage restricted progenitor cell | 3.17e-09 | 66 |
electrically responsive cell | 3.73e-09 | 61 |
electrically active cell | 3.73e-09 | 61 |
motile cell | 5.81e-09 | 386 |
myeloid leukocyte | 4.14e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 2.89e-24 | 167 |
mesoderm | 1.53e-18 | 315 |
mesoderm-derived structure | 1.53e-18 | 315 |
presumptive mesoderm | 1.53e-18 | 315 |
lateral plate mesoderm | 1.83e-17 | 203 |
skeletal system | 2.35e-12 | 100 |
dense mesenchyme tissue | 3.62e-12 | 73 |
somite | 4.71e-12 | 71 |
presomitic mesoderm | 4.71e-12 | 71 |
presumptive segmental plate | 4.71e-12 | 71 |
dermomyotome | 4.71e-12 | 71 |
trunk paraxial mesoderm | 4.71e-12 | 71 |
skeletal element | 6.13e-12 | 90 |
connective tissue | 9.11e-12 | 371 |
paraxial mesoderm | 1.28e-11 | 72 |
presumptive paraxial mesoderm | 1.28e-11 | 72 |
bone marrow | 1.54e-11 | 76 |
skeletal muscle tissue | 2.65e-11 | 62 |
striated muscle tissue | 2.65e-11 | 62 |
myotome | 2.65e-11 | 62 |
bone element | 4.24e-11 | 82 |
muscle tissue | 2.03e-10 | 64 |
musculature | 2.03e-10 | 64 |
musculature of body | 2.03e-10 | 64 |
epithelial vesicle | 2.14e-10 | 78 |
artery | 3.15e-10 | 42 |
arterial blood vessel | 3.15e-10 | 42 |
arterial system | 3.15e-10 | 42 |
hematopoietic system | 2.48e-09 | 98 |
blood island | 2.48e-09 | 98 |
multilaminar epithelium | 3.81e-09 | 83 |
hemolymphoid system | 1.09e-07 | 108 |
systemic artery | 1.51e-07 | 33 |
systemic arterial system | 1.51e-07 | 33 |
immune system | 1.55e-07 | 93 |
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