FFCP PHASE1:Hg19::chr19:47364093..47364104,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:47364093..47364104,+|id=chr19:47364093..47364104,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002567;1.12e-08;3!CL:0000306;8.14e-07;4!CL:0002222;8.14e-07;4!CL:0002224;8.14e-07;4|ontology_enrichment_celltype_v019_2=CL:0002567,1.40e-08,3;CL:0000306,9.11e-07,4;CL:0002222,9.11e-07,4;CL:0002224,9.11e-07,4|ontology_enrichment_development_v019=UBERON:0005425;2.62e-23;1!UBERON:0009117;8.45e-10;10!UBERON:0005564;8.45e-10;10!UBERON:0006215;1.12e-08;3!UBERON:0003056;1.12e-08;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!4.57e-22!57;UBERON:0005068!4.57e-22!57;UBERON:0006241!4.57e-22!57;UBERON:0007135!4.57e-22!57;UBERON:0000955!1.12e-19!69;UBERON:0006238!1.12e-19!69;UBERON:0002616!1.23e-19!59;UBERON:0000073!4.57e-18!94;UBERON:0001016!4.57e-18!94;UBERON:0001017!9.00e-18!82;UBERON:0005743!3.41e-17!86;UBERON:0002780!1.22e-16!41;UBERON:0001890!1.22e-16!41;UBERON:0006240!1.22e-16!41;UBERON:0003080!4.81e-16!42;UBERON:0007023!5.27e-16!115;UBERON:0003075!2.27e-15!86;UBERON:0007284!2.27e-15!86;UBERON:0001893!1.04e-14!34;UBERON:0002020!1.68e-14!34;UBERON:0003528!1.68e-14!34;UBERON:0002346!3.98e-14!90;UBERON:0002791!1.08e-13!33;UBERON:0003056!2.11e-13!61;UBERON:0001869!6.50e-13!32;UBERON:0000033!9.42e-13!123;UBERON:0000153!1.08e-12!129;UBERON:0007811!1.08e-12!129;UBERON:0000956!1.87e-12!25;UBERON:0000203!1.87e-12!25;UBERON:0002619!1.85e-11!22;UBERON:0001950!4.36e-11!20;UBERON:0004121!4.73e-10!169;UBERON:0000924!1.78e-09!173;UBERON:0006601!1.78e-09!173;UBERON:0003076!2.86e-07!15;UBERON:0003057!2.86e-07!15;UBERON:0004732!3.03e-07!13;UBERON:0000119!4.56e-07!312;UBERON:0000025!4.93e-07!194;UBERON:0000477!5.43e-07!286;UBERON:0000483!5.47e-07!309;UBERON:0000475!7.42e-07!365|ontology_enrichment_uberon_v019=UBERON:0003112;2.62e-23;1!UBERON:0000941;2.62e-23;1!UBERON:0001785;2.62e-23;1!UBERON:0002464;2.62e-23;1!UBERON:0004904;2.62e-23;1!UBERON:0011158;2.62e-23;1!UBERON:0001021;2.62e-23;1!UBERON:0003128;2.62e-23;1!UBERON:0001703;2.62e-23;1!UBERON:0002241;2.62e-23;1!UBERON:0003714;2.31e-12;2!UBERON:0005162;2.31e-12;2!UBERON:0000122;2.31e-12;2!UBERON:0000473;5.22e-12;8!UBERON:0003135;5.41e-09;11!UBERON:0004732;9.51e-08;13!UBERON:0010077;8.14e-07;4!UBERON:0005389;8.14e-07;4!UBERON:0000484;8.14e-07;4!UBERON:0000965;8.14e-07;4!UBERON:0001803;8.14e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.62e-23,1;UBERON:0001785,2.62e-23,1;UBERON:0002464,2.62e-23,1;UBERON:0004904,2.62e-23,1;UBERON:0001021,2.62e-23,1;UBERON:0003902,2.62e-23,1;UBERON:0005425,2.62e-23,1;UBERON:0003112,6.40e-23,1;UBERON:0011158,6.40e-23,1;UBERON:0003128,6.40e-23,1;UBERON:0001703,6.40e-23,1;UBERON:0002241,6.40e-23,1;UBERON:0004761,6.40e-23,1;UBERON:0009617,6.40e-23,1;UBERON:0003714,2.32e-12,2;UBERON:0005162,2.32e-12,2;UBERON:0000122,2.32e-12,2;UBERON:0005253,3.62e-12,2;UBERON:0000473,4.94e-12,8;UBERON:0003135,5.20e-09,11;UBERON:0004732,9.20e-08,13;UBERON:0001781,8.14e-07,4;UBERON:0010077,9.11e-07,4;UBERON:0005389,9.11e-07,4;UBERON:0000484,9.11e-07,4;UBERON:0002546,9.11e-07,4;UBERON:0000965,9.11e-07,4;UBERON:0001803,9.11e-07,4;UBERON:0003073,9.11e-07,4;UBERON:0005426,9.11e-07,4|phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0,0.125542639594803,0,0.0821005894499457,0.0787107813136792,0,0,0.154816123316076,0,0,0,0.0774672005803016,0,0,0,0,0,0,0.32389366601898,0.257575567634187,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.94826728407911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0,0.916853528483988,0,0,0,0,0,0.238490624305342,0,0,0.198762407366705,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0.22452937262617,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0.576175924479999,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0.168776332241266,0.0974370051611986,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0.234817388471643,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,1.17217447210047,0,0,0,0,0,0,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0.215627574859517,0,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:47364093..47364104,+ | |||
|id=chr19:47364093..47364104,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002567;1.12e-08;3!CL:0000306;8.14e-07;4!CL:0002222;8.14e-07;4!CL:0002224;8.14e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,1.40e-08,3;CL:0000306,9.11e-07,4;CL:0002222,9.11e-07,4;CL:0002224,9.11e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.62e-23;1!UBERON:0009117;8.45e-10;10!UBERON:0005564;8.45e-10;10!UBERON:0006215;1.12e-08;3!UBERON:0003056;1.12e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.57e-22!57;UBERON:0005068!4.57e-22!57;UBERON:0006241!4.57e-22!57;UBERON:0007135!4.57e-22!57;UBERON:0000955!1.12e-19!69;UBERON:0006238!1.12e-19!69;UBERON:0002616!1.23e-19!59;UBERON:0000073!4.57e-18!94;UBERON:0001016!4.57e-18!94;UBERON:0001017!9.00e-18!82;UBERON:0005743!3.41e-17!86;UBERON:0002780!1.22e-16!41;UBERON:0001890!1.22e-16!41;UBERON:0006240!1.22e-16!41;UBERON:0003080!4.81e-16!42;UBERON:0007023!5.27e-16!115;UBERON:0003075!2.27e-15!86;UBERON:0007284!2.27e-15!86;UBERON:0001893!1.04e-14!34;UBERON:0002020!1.68e-14!34;UBERON:0003528!1.68e-14!34;UBERON:0002346!3.98e-14!90;UBERON:0002791!1.08e-13!33;UBERON:0003056!2.11e-13!61;UBERON:0001869!6.50e-13!32;UBERON:0000033!9.42e-13!123;UBERON:0000153!1.08e-12!129;UBERON:0007811!1.08e-12!129;UBERON:0000956!1.87e-12!25;UBERON:0000203!1.87e-12!25;UBERON:0002619!1.85e-11!22;UBERON:0001950!4.36e-11!20;UBERON:0004121!4.73e-10!169;UBERON:0000924!1.78e-09!173;UBERON:0006601!1.78e-09!173;UBERON:0003076!2.86e-07!15;UBERON:0003057!2.86e-07!15;UBERON:0004732!3.03e-07!13;UBERON:0000119!4.56e-07!312;UBERON:0000025!4.93e-07!194;UBERON:0000477!5.43e-07!286;UBERON:0000483!5.47e-07!309;UBERON:0000475!7.42e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0003112;2.62e-23;1!UBERON:0000941;2.62e-23;1!UBERON:0001785;2.62e-23;1!UBERON:0002464;2.62e-23;1!UBERON:0004904;2.62e-23;1!UBERON:0011158;2.62e-23;1!UBERON:0001021;2.62e-23;1!UBERON:0003128;2.62e-23;1!UBERON:0001703;2.62e-23;1!UBERON:0002241;2.62e-23;1!UBERON:0003714;2.31e-12;2!UBERON:0005162;2.31e-12;2!UBERON:0000122;2.31e-12;2!UBERON:0000473;5.22e-12;8!UBERON:0003135;5.41e-09;11!UBERON:0004732;9.51e-08;13!UBERON:0010077;8.14e-07;4!UBERON:0005389;8.14e-07;4!UBERON:0000484;8.14e-07;4!UBERON:0000965;8.14e-07;4!UBERON:0001803;8.14e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.62e-23,1;UBERON:0001785,2.62e-23,1;UBERON:0002464,2.62e-23,1;UBERON:0004904,2.62e-23,1;UBERON:0001021,2.62e-23,1;UBERON:0003902,2.62e-23,1;UBERON:0005425,2.62e-23,1;UBERON:0003112,6.40e-23,1;UBERON:0011158,6.40e-23,1;UBERON:0003128,6.40e-23,1;UBERON:0001703,6.40e-23,1;UBERON:0002241,6.40e-23,1;UBERON:0004761,6.40e-23,1;UBERON:0009617,6.40e-23,1;UBERON:0003714,2.32e-12,2;UBERON:0005162,2.32e-12,2;UBERON:0000122,2.32e-12,2;UBERON:0005253,3.62e-12,2;UBERON:0000473,4.94e-12,8;UBERON:0003135,5.20e-09,11;UBERON:0004732,9.20e-08,13;UBERON:0001781,8.14e-07,4;UBERON:0010077,9.11e-07,4;UBERON:0005389,9.11e-07,4;UBERON:0000484,9.11e-07,4;UBERON:0002546,9.11e-07,4;UBERON:0000965,9.11e-07,4;UBERON:0001803,9.11e-07,4;UBERON:0003073,9.11e-07,4;UBERON:0005426,9.11e-07,4 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0,0.125542639594803,0,0.0821005894499457,0.0787107813136792,0,0,0.154816123316076,0,0,0,0.0774672005803016,0,0,0,0,0,0,0.32389366601898,0.257575567634187,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.94826728407911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0,0.916853528483988,0,0,0,0,0,0.238490624305342,0,0,0.198762407366705,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0.22452937262617,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0.576175924479999,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0.168776332241266,0.0974370051611986,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0.234817388471643,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,1.17217447210047,0,0,0,0,0,0,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0.215627574859517,0,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0.451199612907412,0,0,0,0,0,0.170093705276516,0,0,0.270946437543853,0,0,0,0.223874754722178,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0.179872457583315,0,0,0.202182481573316,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0.333698283423817,0,0,0,0.270455678475983,0,0,0.18714054040822,0,0,0,0,0.23874448473769,0,0,0,0.703347082052564,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0.185536196323703,1.99613798001194,0,0.0874599999961957,0,0,0,0,0,0,0,0,0.241192877250816,1.52581736317083,0.221158519862449,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0.216388639742091,0,0.176915129006678,0,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0.174118413160805,0,0,0.0967563312890851,0.0730893170861856,0,0,0,0.225980740780532,0,0,0.379864775735272,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0.203996435272644,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0.268733889946905,0,0,0,0,0.0674035438541849,0,0,0,0.544813624446302,0,0,0,0,0,0.182248669974074,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0.25426853765475,0,0,0.326587360109409,1.19730191562487,0,0,0,0,0,0.129282956361551,0.26446520348538,0.171086837884329,0,0.213574825135389,0.157204305099666,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0,0,0.310482014706917,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0.457680136793847,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0.567515953566836,0,0.139879507719444,0,0,0.107824811396682,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.578063025868136,0,0.319267718114302,0,0.504143392443436,0.138314504928436,1.13032951942296,1.42769420259154,0,0,0,0,0,0,0,0.0752103283492573,0.20170506870352,0,0,0.163771917510097,0,0.405225507710368,0,0.206686796501184,0.507326481551255,0.546974809018219,0,0,0,0,0,0.336283722218824,0,0.227662191351298,0,0.230467975111559,0.171488009437418,0.611727596791485,0.0657727735628491,0,0,0.235479278551542,0,0.280272163313789,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0.109940516745429,0,0.0771741581079447,0.218559560503957,0,0,0.235676547101626,0.196308467114945,0.297046400327086,0,0,0,0.0644578879735772,0,0,0,0,0,0.917458566809082,0.286679166302903,0,0.0679914901909147,0,0,0,0.462175628631418,0,0,0.109265571963696,0,0,0,0,0,1.66713136080127,1.33982065078089,0,0.310298987585686,0,0,0.0645889098360061,0.0620747142958579,0.112131862580613,0.190941474834495,0,0,0,0.134704106029175,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr19:47364093..47364104,+ | |||
}} |
Revision as of 21:27, 11 September 2013
Short description: | p@chr19:47364093..47364104, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:47364093..47364104, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 1.40e-08 | 3 |
crystallin accumulating cell | 9.11e-07 | 4 |
vertebrate lens cell | 9.11e-07 | 4 |
lens epithelial cell | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.62e-23 | 1 |
cranial nerve | 2.62e-23 | 1 |
nerve trunk | 2.62e-23 | 1 |
nerve connecting eye with brain | 2.62e-23 | 1 |
nerve | 2.62e-23 | 1 |
retinal neural layer | 2.62e-23 | 1 |
presumptive neural retina | 2.62e-23 | 1 |
olfactory region | 6.40e-23 | 1 |
primary subdivision of skull | 6.40e-23 | 1 |
cranium | 6.40e-23 | 1 |
neurocranium | 6.40e-23 | 1 |
chondrocranium | 6.40e-23 | 1 |
cartilaginous neurocranium | 6.40e-23 | 1 |
head paraxial mesoderm | 6.40e-23 | 1 |
neural tissue | 2.32e-12 | 2 |
multi cell component structure | 2.32e-12 | 2 |
neuron projection bundle | 2.32e-12 | 2 |
head mesenchyme | 3.62e-12 | 2 |
testis | 4.94e-12 | 8 |
male reproductive organ | 5.20e-09 | 11 |
segmental subdivision of nervous system | 9.20e-08 | 13 |
layer of retina | 8.14e-07 | 4 |
cuboidal epithelium | 9.11e-07 | 4 |
transparent eye structure | 9.11e-07 | 4 |
simple cuboidal epithelium | 9.11e-07 | 4 |
cranial placode | 9.11e-07 | 4 |
lens of camera-type eye | 9.11e-07 | 4 |
epithelium of lens | 9.11e-07 | 4 |
lens placode | 9.11e-07 | 4 |
lens vesicle | 9.11e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.