FFCP PHASE1:Hg19::chr19:13296953..13296959,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1178|description=CAGE_peak_at_chr19:13296953..13296959,-|id=chr19:13296953..13296959,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000039;1.71e-10;7!CL:0000586;1.71e-10;7|ontology_enrichment_celltype_v019_2=CL:0000039,1.68e-10,7;CL:0000586,1.68e-10,7|ontology_enrichment_development_v019=UBERON:0009117;4.33e-19;10!UBERON:0005564;4.33e-19;10|ontology_enrichment_disease=DOID:162!1.09e-11!235;DOID:0050687!2.44e-11!143;DOID:14566!5.35e-11!239;DOID:3095!7.61e-09!22;DOID:2994!7.61e-09!22;DOID:305!1.58e-07!106|ontology_enrichment_disease_v019=DOID:6193;3.58e-09;1|ontology_enrichment_disease_v019_2=DOID:6193,3.58e-09,1;DOID:305,5.05e-08,106;DOID:0050687,1.20e-07,143|ontology_enrichment_uberon=UBERON:0001049!1.25e-18!57;UBERON:0005068!1.25e-18!57;UBERON:0006241!1.25e-18!57;UBERON:0007135!1.25e-18!57;UBERON:0000073!2.09e-18!94;UBERON:0001016!2.09e-18!94;UBERON:0001017!3.14e-18!82;UBERON:0000955!4.78e-18!69;UBERON:0006238!4.78e-18!69;UBERON:0005743!1.61e-17!86;UBERON:0003080!1.89e-17!42;UBERON:0002780!1.54e-16!41;UBERON:0001890!1.54e-16!41;UBERON:0006240!1.54e-16!41;UBERON:0002616!4.62e-16!59;UBERON:0002346!8.06e-16!90;UBERON:0002020!4.19e-15!34;UBERON:0003528!4.19e-15!34;UBERON:0001893!4.48e-15!34;UBERON:0003075!1.34e-14!86;UBERON:0007284!1.34e-14!86;UBERON:0002791!3.25e-14!33;UBERON:0003056!2.11e-13!61;UBERON:0001869!2.91e-13!32;UBERON:0000956!1.14e-12!25;UBERON:0000203!1.14e-12!25;UBERON:0000924!1.96e-12!173;UBERON:0006601!1.96e-12!173;UBERON:0004121!1.89e-11!169;UBERON:0001950!1.17e-10!20;UBERON:0002619!1.70e-10!22;UBERON:0000033!2.75e-08!123;UBERON:0000153!6.80e-08!129;UBERON:0007811!6.80e-08!129;UBERON:0002298!6.15e-07!8;UBERON:0000200!9.78e-07!6|ontology_enrichment_uberon_v019=UBERON:0000473;6.87e-24;8!UBERON:0003135;2.42e-17;11!UBERON:0003101;5.06e-12;22!UBERON:0000079;5.06e-12;22!UBERON:0000991;5.43e-09;21!UBERON:0002336;1.53e-08;1!UBERON:0011215;1.53e-08;1!UBERON:0001018;1.53e-08;1!UBERON:0002473;1.53e-08;1!UBERON:0005340;1.53e-08;1!UBERON:0003544;1.53e-08;1!UBERON:0005970;1.53e-08;1!UBERON:0002316;1.53e-08;1!UBERON:0001020;1.53e-08;1!UBERON:0002437;1.53e-08;1|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.41e-24,8;UBERON:0003135,2.30e-17,11;UBERON:0003101,4.82e-12,22;UBERON:0000079,4.82e-12,22;UBERON:0000991,5.29e-09,21;UBERON:0009196,5.29e-09,21;UBERON:0009117,5.29e-09,21;UBERON:0005564,5.29e-09,21;UBERON:0004176,1.39e-08,22;UBERON:0002336,1.91e-08,1;UBERON:0011215,1.91e-08,1;UBERON:0001018,1.91e-08,1;UBERON:0002473,1.91e-08,1;UBERON:0005340,1.91e-08,1;UBERON:0003544,1.91e-08,1;UBERON:0005970,1.91e-08,1;UBERON:0002316,1.91e-08,1;UBERON:0001020,1.91e-08,1;UBERON:0002437,1.91e-08,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.547497700291537,0.125542639594803,0,0,0.157421562627358,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.087834785693126,1.83370705696798,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0,0,0,0.275118041940067,0.626984899610432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0.365921118388786,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0.236613600079688,0,0,0.441175890929576,0.871517776369625,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0.63497894292169,2.29193055334967,0,0,0.205654985406647,0.300343057843917,0.285826432630578,0,0,0,0,0,0,0.26593811658487,0,0,0,0.799266537048298,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0.336255431980582,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0.574265537996172,0,0,0,0.154048617114644,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0.316379424718726,0,0,0,0,0,0.179872457583315,0.274537029736055,0,0,0,0,0.48763373908959,0,0,0.272999822815972,0,0,0,0,0,0,0.655894752046633,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0.159426272728822,0,0.383010740264733,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,0.748562161632879,0,0.242721043499027,1.33732061132974,0,0,0,0,0.994147647766298,0,0,0,0,0,0,0,0.102268682502155,0.246169610922139,0,0.0898683511473268,0,0,0,0,0,0,0.556608588971108,0,0,0.61221999997337,0.724999575434793,0.1137934482855,22.37432122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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1178 | |||
|description=CAGE_peak_at_chr19:13296953..13296959,- | |||
|id=chr19:13296953..13296959,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.71e-10;7!CL:0000586;1.71e-10;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.68e-10,7;CL:0000586,1.68e-10,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.33e-19;10!UBERON:0005564;4.33e-19;10 | |||
|ontology_enrichment_disease=DOID:162!1.09e-11!235;DOID:0050687!2.44e-11!143;DOID:14566!5.35e-11!239;DOID:3095!7.61e-09!22;DOID:2994!7.61e-09!22;DOID:305!1.58e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:6193;3.58e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,3.58e-09,1;DOID:305,5.05e-08,106;DOID:0050687,1.20e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.25e-18!57;UBERON:0005068!1.25e-18!57;UBERON:0006241!1.25e-18!57;UBERON:0007135!1.25e-18!57;UBERON:0000073!2.09e-18!94;UBERON:0001016!2.09e-18!94;UBERON:0001017!3.14e-18!82;UBERON:0000955!4.78e-18!69;UBERON:0006238!4.78e-18!69;UBERON:0005743!1.61e-17!86;UBERON:0003080!1.89e-17!42;UBERON:0002780!1.54e-16!41;UBERON:0001890!1.54e-16!41;UBERON:0006240!1.54e-16!41;UBERON:0002616!4.62e-16!59;UBERON:0002346!8.06e-16!90;UBERON:0002020!4.19e-15!34;UBERON:0003528!4.19e-15!34;UBERON:0001893!4.48e-15!34;UBERON:0003075!1.34e-14!86;UBERON:0007284!1.34e-14!86;UBERON:0002791!3.25e-14!33;UBERON:0003056!2.11e-13!61;UBERON:0001869!2.91e-13!32;UBERON:0000956!1.14e-12!25;UBERON:0000203!1.14e-12!25;UBERON:0000924!1.96e-12!173;UBERON:0006601!1.96e-12!173;UBERON:0004121!1.89e-11!169;UBERON:0001950!1.17e-10!20;UBERON:0002619!1.70e-10!22;UBERON:0000033!2.75e-08!123;UBERON:0000153!6.80e-08!129;UBERON:0007811!6.80e-08!129;UBERON:0002298!6.15e-07!8;UBERON:0000200!9.78e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.87e-24;8!UBERON:0003135;2.42e-17;11!UBERON:0003101;5.06e-12;22!UBERON:0000079;5.06e-12;22!UBERON:0000991;5.43e-09;21!UBERON:0002336;1.53e-08;1!UBERON:0011215;1.53e-08;1!UBERON:0001018;1.53e-08;1!UBERON:0002473;1.53e-08;1!UBERON:0005340;1.53e-08;1!UBERON:0003544;1.53e-08;1!UBERON:0005970;1.53e-08;1!UBERON:0002316;1.53e-08;1!UBERON:0001020;1.53e-08;1!UBERON:0002437;1.53e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.41e-24,8;UBERON:0003135,2.30e-17,11;UBERON:0003101,4.82e-12,22;UBERON:0000079,4.82e-12,22;UBERON:0000991,5.29e-09,21;UBERON:0009196,5.29e-09,21;UBERON:0009117,5.29e-09,21;UBERON:0005564,5.29e-09,21;UBERON:0004176,1.39e-08,22;UBERON:0002336,1.91e-08,1;UBERON:0011215,1.91e-08,1;UBERON:0001018,1.91e-08,1;UBERON:0002473,1.91e-08,1;UBERON:0005340,1.91e-08,1;UBERON:0003544,1.91e-08,1;UBERON:0005970,1.91e-08,1;UBERON:0002316,1.91e-08,1;UBERON:0001020,1.91e-08,1;UBERON:0002437,1.91e-08,1 | |||
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|short_description=p@chr19:13296953..13296959,- | |||
}} |
Revision as of 18:55, 11 September 2013
Short description: | p@chr19:13296953..13296959, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:13296953..13296959, - |
Coexpression cluster: | C1178_embryonic_testicular_teratocarcinoma_lymphangiectasia_epithelioid_bronchioalveolar_testis |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.68e-10 | 7 |
germ cell | 1.68e-10 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 6.41e-24 | 8 |
male reproductive organ | 2.30e-17 | 11 |
male organism | 4.82e-12 | 22 |
male reproductive system | 4.82e-12 | 22 |
gonad | 5.29e-09 | 21 |
indifferent external genitalia | 5.29e-09 | 21 |
indifferent gonad | 5.29e-09 | 21 |
gonad primordium | 5.29e-09 | 21 |
external genitalia | 1.39e-08 | 22 |
corpus callosum | 1.91e-08 | 1 |
central nervous system cell part cluster | 1.91e-08 | 1 |
axon tract | 1.91e-08 | 1 |
intercerebral commissure | 1.91e-08 | 1 |
dorsal telencephalic commissure | 1.91e-08 | 1 |
brain white matter | 1.91e-08 | 1 |
brain commissure | 1.91e-08 | 1 |
white matter | 1.91e-08 | 1 |
nervous system commissure | 1.91e-08 | 1 |
cerebral hemisphere white matter | 1.91e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 3.58e-09 | 1 |
carcinoma | 5.05e-08 | 106 |
cell type cancer | 1.20e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.