FFCP PHASE1:Hg19::chr19:11071630..11071644,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6597|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11100|TSSclassifier=S|UniProt=P51532,Q9HBD4,F5H0X5,A7E2E1,A5D6X0|association_with_transcript=-32bp_to_,32bp_to_ENST00000344626,ENST00000358026,ENST00000421844,ENST00000429416,NM_001128844,NM_003072,uc002mqe.2,uc002mqf.3,uc010dxo.2,uc010dxp.2_5end|description=CAGE_peak_4_at_SMARCA4_5end|id=chr19:11071630..11071644,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0,0,0,0,1.34088328328186,0,0,0,0.522371256399677,0.982935746006035,1.39560233594486,0.436882744260345,0.263766978228454,0,0.331397375727916,0,0.602694528023977,0.730310090387373,1.46379839637152,0.492484232307152,0.816002764977012,0,0.572471974262113,0.273748850145768,1.00434111675842,0.840547463227464,0.738905305049512,0.787107813136792,1.18009283054671,0,0.928896739896456,0,2.409647350226,0.369754010166788,1.00707360754392,0.568676929949686,0.880801318004542,0.553995408531877,0.802177789880567,0.217010870715852,0.447830948479849,0.647787332037959,0.257575567634187,0.290796477559129,0,0.970336244751265,0,0.411167888021826,0.929119112685311,0.575384784644301,0.512321413058201,0,0,0,0,0,0.545812300115692,0.224723484445085,0,0,0,0.329851300186716,0.398927315243264,0,0,1.13477044938228,0,0.251248665256743,0.521482918420201,0,0,0.368277635987565,0.632924774881769,0.845021145247767,0.425208599930087,0.209658645508376,0.44931452458598,0.300353785683013,0.32145117339416,0.285012743741249,0.59675003159727,0.91332076882317,0,1.63841583378639,0,0,0,0,1.32208974556972,0.954053754535364,1.1384259382189,0,0.382273228125229,0,0,0.790152254325231,0.786839080455332,0,0.411202997999018,0.501559486172034,0.651844533267181,0,0,0.779873198196215,0,0.443067789167242,1.08321545506006,1.0247305578054,0.780356085359269,0.822189523018381,0,0,0.444859689486181,0.535081656179426,1.04535523804977,0.453237370790265,0,0,1.01207876807801,0.95569624297229,0,0,1.05402583354441,1.02389288923535,0,0.710331756132051,0.821127996921047,0,1.06976078313403,0.724122019413995,0,0,0.255725123687061,1.0843174571537,0,0.724232594804119,0.795285947051099,0.486634870302636,0.472674085820339,0.221729397462564,0.966182642624386,1.76821751921912,0.728590576585084,1.11235332835329,0.324547393654683,0,0.132957960518865,0,0,0,1.19257444420023,0,2.08284300964557,1.13061588384802,1.25849830862972,1.10047216776027,1.04497483268405,1.03366703667732,1.06729878806013,1.00416183829401,1.20848795132744,0,0.24406205754817,0.367663080345869,0.81014194788176,0.446498641420399,2.02076435363553,1.0135033243499,0,0.949265659568129,0.916008719652036,1.31780417436063,0,1.3082821564276,0.496971951695318,0.25326102332916,0.794455084879313,0.286836620748814,1.77334191099179,0.560677600142307,0,0.49333509683432,0.622422070799533,0.67355336034844,0.163461903113459,0.605429710579726,0.576175924479999,0.70296429550139,0.936480230490962,1.1409436430889,0.298897361103602,0.939475989150119,0.485618833104395,0.702254033511242,0.408308342509787,0.737005903870608,0.309977343527296,0,0.494533858557114,0.910161361938026,0.718618141816238,0.168336113954066,0.750711119231785,0.277064115484183,0,0.612975591598039,0.901428353439581,0.226864366320042,0.717558542755448,0.640672166455702,0.635795703478686,0.600182192168805,0.618315175430633,1.03056216018252,0.18611685633159,1.18143432568886,0.389748020644795,2.27190396819703,0.0920498986422993,0.323292113637624,1.06502877754984,1.10827308050404,0.508681776931463,0.57978255948989,1.63647672354501,1.72082757233402,1.70763188581434,0.795178609928912,0.69716365721711,1.0366105501537,0.504641701751257,0.36497735907583,1.56449532329816,1.28648187638577,1.38134921352481,0.464367928031979,0.721879481669586,1.30137480043828,1.01150814046861,1.20505514941741,0.882351781859152,1.52515610864684,0.474541238222193,1.07865046528132,0.784885860501384,1.92373578473195,0.738155454624648,0,1.2347220339942,0,0,0,0,0,0.122988438543114,1.3725424823882,0.98775256867763,1.1240175325762,0.502644862058154,0.648119116109707,0.651616610620649,1.03993478527958,0,0.463721619900307,1.05667824812239,0.577465791044295,0.462985512576611,0.380508304469197,1.58040879591855,0.858486162094873,0,0,0.743155811443641,0,0.335964256397719,0.567100388969546,0.358234090811393,0,0.766765358330422,0.985326475791887,1.05658120815871,1.4512968087854,0.864719720501769,1.13618190083742,0.698476837213859,0.381988425558278,3.51652341630141,1.71072446022705,0.822619941626588,0,0.571652865261156,1.00917975910825,0,0.2933531432838,0.775630294546667,0,0,0.531876233169741,0,0.514414748524284,0,1.0656887160644,0.57191197463259,1.62786481617433,2.46972101034231,0,0.355391948742546,0,0,0,0.499864955910285,1.2162378064119,0.50225709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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6597 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11100 | |||
|TSSclassifier=S | |||
|UniProt=P51532,Q9HBD4,F5H0X5,A7E2E1,A5D6X0 | |||
|association_with_transcript=-32bp_to_,32bp_to_ENST00000344626,ENST00000358026,ENST00000421844,ENST00000429416,NM_001128844,NM_003072,uc002mqe.2,uc002mqf.3,uc010dxo.2,uc010dxp.2_5end | |||
|description=CAGE_peak_4_at_SMARCA4_5end | |||
|id=chr19:11071630..11071644,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p4@SMARCA4 | |||
}} |
Revision as of 18:38, 11 September 2013
Short description: | p4@SMARCA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SMARCA4_5end |
Coexpression cluster: | NA |
Association with transcript: | -32bp_to_, 32bp_to_ENST00000344626, ENST00000358026, ENST00000421844, ENST00000429416, NM_001128844, NM_003072, uc002mqe.2, uc002mqf.3, uc010dxo.2, uc010dxp.2_5end |
EntrezGene: | SMARCA4 |
HGNC: | 11100 |
UniProt: | P51532Q9HBD4F5H0X5A7E2E1A5D6X0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.