FFCP PHASE1:Hg19::chr19:10688044..10688070,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C2474|description=CAGE_peak_at_chr19:10688044..10688070,-|id=chr19:10688044..10688070,-|ontology_enrichment_celltype=CL:0000077!8.60e-19!19;CL:0000066!1.25e-14!254;CL:1000497!1.48e-11!18;CL:0002518!1.48e-11!18;CL:1000507!7.18e-10!12;CL:1000494!7.18e-10!12;CL:1000449!1.71e-09!16|ontology_enrichment_celltype_v019=CL:0000077;3.87e-37;19!CL:1000507;1.14e-19;10!CL:1000494;1.14e-19;10!CL:1000497;2.62e-16;17!CL:0002518;2.62e-16;17!CL:1000449;1.87e-12;15!CL:0002681;1.34e-09;12!CL:0002584;1.34e-09;12!CL:0000239;2.14e-08;3!CL:1000615;2.14e-08;3!CL:0002306;2.14e-08;3|ontology_enrichment_celltype_v019_2=CL:0000077,4.07e-37,19;CL:0000066,1.68e-21,253;CL:1000507,9.33e-20,10;CL:1000494,9.33e-20,10;CL:1000497,2.20e-16,17;CL:0002518,2.20e-16,17;CL:1000449,1.65e-12,15;CL:0002681,1.20e-09,12;CL:0002584,1.20e-09,12;CL:0000213,5.84e-09,58;CL:0000215,5.84e-09,58;CL:0000239,1.69e-08,3;CL:1000615,1.69e-08,3;CL:0002306,1.69e-08,3;CL:0000076,6.53e-08,63|ontology_enrichment_development_v019=UBERON:0008947;7.79e-13;29!UBERON:0003104;6.07e-07;31|ontology_enrichment_disease=DOID:14566!2.87e-18!239;DOID:162!1.74e-16!235;DOID:0050687!7.29e-14!143;DOID:305!3.57e-13!106;DOID:193!5.22e-11!29;DOID:120!9.71e-10!27;DOID:2394!1.11e-08!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:14566,5.76e-22,239;DOID:162,1.13e-20,235;DOID:0050687,2.46e-18,143;DOID:305,2.48e-18,106|ontology_enrichment_uberon=UBERON:0001737!9.62e-13!9;UBERON:0005172!3.81e-11!55;UBERON:0005173!3.81e-11!55;UBERON:0009773!7.18e-10!12;UBERON:0001231!7.18e-10!12;UBERON:0004810!7.18e-10!12;UBERON:0002113!7.60e-10!27;UBERON:0003918!7.60e-10!27;UBERON:0005095!7.60e-10!27;UBERON:0007687!7.60e-10!27;UBERON:0001851!1.13e-09!16;UBERON:0004211!1.71e-09!16;UBERON:0001285!1.71e-09!16;UBERON:0007684!1.71e-09!16;UBERON:0003220!1.71e-09!16;UBERON:0004208!1.71e-09!16;UBERON:0002417!3.78e-09!61;UBERON:0000916!3.78e-09!61;UBERON:0006555!1.03e-08!17;UBERON:0005103!1.03e-08!17;UBERON:0000083!1.03e-08!17;UBERON:0009201!1.03e-08!17;UBERON:0004819!1.03e-08!17;UBERON:0006553!1.03e-08!17;UBERON:0003074!1.03e-08!17;UBERON:0003060!1.03e-08!17;UBERON:0000080!5.06e-08!18;UBERON:0002120!5.06e-08!18;UBERON:0004875!5.06e-08!18;UBERON:0005721!5.06e-08!18;UBERON:0005754!5.06e-08!18;UBERON:0007297!5.06e-08!18;UBERON:0000489!1.82e-07!32;UBERON:0004876!7.32e-07!20|ontology_enrichment_uberon_v019=UBERON:0001737;3.16e-24;9!UBERON:0001557;3.16e-24;9!UBERON:0004211;1.14e-19;10!UBERON:0009773;1.14e-19;10!UBERON:0001231;1.14e-19;10!UBERON:0004810;1.14e-19;10!UBERON:0002113;1.82e-17;24!UBERON:0011143;1.82e-17;24!UBERON:0001851;2.40e-15;15!UBERON:0000489;7.97e-14;29!UBERON:0005172;9.69e-14;52!UBERON:0005173;9.69e-14;52!UBERON:0006554;3.03e-13;30!UBERON:0001008;3.03e-13;30!UBERON:0006555;1.87e-12;15!UBERON:0004819;1.87e-12;15!UBERON:0001285;1.87e-12;15!UBERON:0007684;1.87e-12;15!UBERON:0001225;1.34e-09;12!UBERON:0008987;1.34e-09;12!UBERON:0002417;2.38e-09;58!UBERON:0000916;2.38e-09;58!UBERON:0000072;1.33e-08;37!UBERON:0002369;1.42e-08;3!UBERON:0001235;1.42e-08;3!UBERON:0006858;1.42e-08;3!UBERON:0006853;2.14e-08;3!UBERON:0007685;2.14e-08;3!UBERON:0004134;2.14e-08;3!UBERON:0000353;1.91e-07;15|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.13e-24,9;UBERON:0005172,5.81e-20,54;UBERON:0005173,5.81e-20,54;UBERON:0004810,9.33e-20,10;UBERON:0002417,2.70e-17,60;UBERON:0000916,2.70e-17,60;UBERON:0002113,7.10e-16,26;UBERON:0003918,7.10e-16,26;UBERON:0011143,7.10e-16,26;UBERON:0005095,7.10e-16,26;UBERON:0007687,7.10e-16,26;UBERON:0001851,2.15e-15,15;UBERON:0000489,9.87e-13,31;UBERON:0004211,1.65e-12,15;UBERON:0009773,1.65e-12,15;UBERON:0001231,1.65e-12,15;UBERON:0001285,1.65e-12,15;UBERON:0007684,1.65e-12,15;UBERON:0004208,1.65e-12,15;UBERON:0005177,1.21e-11,101;UBERON:0006555,1.32e-11,16;UBERON:0004819,1.32e-11,16;UBERON:0001557,2.33e-10,19;UBERON:0009569,8.40e-10,112;UBERON:0001225,1.20e-09,12;UBERON:0008987,1.20e-09,12;UBERON:0008947,5.19e-09,38;UBERON:0003258,5.19e-09,38;UBERON:0002369,1.45e-08,3;UBERON:0001235,1.45e-08,3;UBERON:0006858,1.45e-08,3;UBERON:0006853,1.69e-08,3;UBERON:0007685,1.69e-08,3;UBERON:0004134,1.69e-08,3;UBERON:0000353,1.76e-07,15;UBERON:0006554,3.01e-07,47;UBERON:0001008,4.96e-07,48|phase1_expression=0,0.642301571672949,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0.246242116153576,0.816002764977012,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,0.722878304769133,0,0,0,0,0.0945348171640679,0.221729397462564,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24271040056923,0,0.246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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C2474 | |||
|description=CAGE_peak_at_chr19:10688044..10688070,- | |||
|id=chr19:10688044..10688070,- | |||
|ontology_enrichment_celltype=CL:0000077!8.60e-19!19;CL:0000066!1.25e-14!254;CL:1000497!1.48e-11!18;CL:0002518!1.48e-11!18;CL:1000507!7.18e-10!12;CL:1000494!7.18e-10!12;CL:1000449!1.71e-09!16 | |||
|ontology_enrichment_celltype_v019=CL:0000077;3.87e-37;19!CL:1000507;1.14e-19;10!CL:1000494;1.14e-19;10!CL:1000497;2.62e-16;17!CL:0002518;2.62e-16;17!CL:1000449;1.87e-12;15!CL:0002681;1.34e-09;12!CL:0002584;1.34e-09;12!CL:0000239;2.14e-08;3!CL:1000615;2.14e-08;3!CL:0002306;2.14e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,4.07e-37,19;CL:0000066,1.68e-21,253;CL:1000507,9.33e-20,10;CL:1000494,9.33e-20,10;CL:1000497,2.20e-16,17;CL:0002518,2.20e-16,17;CL:1000449,1.65e-12,15;CL:0002681,1.20e-09,12;CL:0002584,1.20e-09,12;CL:0000213,5.84e-09,58;CL:0000215,5.84e-09,58;CL:0000239,1.69e-08,3;CL:1000615,1.69e-08,3;CL:0002306,1.69e-08,3;CL:0000076,6.53e-08,63 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.79e-13;29!UBERON:0003104;6.07e-07;31 | |||
|ontology_enrichment_disease=DOID:14566!2.87e-18!239;DOID:162!1.74e-16!235;DOID:0050687!7.29e-14!143;DOID:305!3.57e-13!106;DOID:193!5.22e-11!29;DOID:120!9.71e-10!27;DOID:2394!1.11e-08!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,5.76e-22,239;DOID:162,1.13e-20,235;DOID:0050687,2.46e-18,143;DOID:305,2.48e-18,106 | |||
|ontology_enrichment_uberon=UBERON:0001737!9.62e-13!9;UBERON:0005172!3.81e-11!55;UBERON:0005173!3.81e-11!55;UBERON:0009773!7.18e-10!12;UBERON:0001231!7.18e-10!12;UBERON:0004810!7.18e-10!12;UBERON:0002113!7.60e-10!27;UBERON:0003918!7.60e-10!27;UBERON:0005095!7.60e-10!27;UBERON:0007687!7.60e-10!27;UBERON:0001851!1.13e-09!16;UBERON:0004211!1.71e-09!16;UBERON:0001285!1.71e-09!16;UBERON:0007684!1.71e-09!16;UBERON:0003220!1.71e-09!16;UBERON:0004208!1.71e-09!16;UBERON:0002417!3.78e-09!61;UBERON:0000916!3.78e-09!61;UBERON:0006555!1.03e-08!17;UBERON:0005103!1.03e-08!17;UBERON:0000083!1.03e-08!17;UBERON:0009201!1.03e-08!17;UBERON:0004819!1.03e-08!17;UBERON:0006553!1.03e-08!17;UBERON:0003074!1.03e-08!17;UBERON:0003060!1.03e-08!17;UBERON:0000080!5.06e-08!18;UBERON:0002120!5.06e-08!18;UBERON:0004875!5.06e-08!18;UBERON:0005721!5.06e-08!18;UBERON:0005754!5.06e-08!18;UBERON:0007297!5.06e-08!18;UBERON:0000489!1.82e-07!32;UBERON:0004876!7.32e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.16e-24;9!UBERON:0001557;3.16e-24;9!UBERON:0004211;1.14e-19;10!UBERON:0009773;1.14e-19;10!UBERON:0001231;1.14e-19;10!UBERON:0004810;1.14e-19;10!UBERON:0002113;1.82e-17;24!UBERON:0011143;1.82e-17;24!UBERON:0001851;2.40e-15;15!UBERON:0000489;7.97e-14;29!UBERON:0005172;9.69e-14;52!UBERON:0005173;9.69e-14;52!UBERON:0006554;3.03e-13;30!UBERON:0001008;3.03e-13;30!UBERON:0006555;1.87e-12;15!UBERON:0004819;1.87e-12;15!UBERON:0001285;1.87e-12;15!UBERON:0007684;1.87e-12;15!UBERON:0001225;1.34e-09;12!UBERON:0008987;1.34e-09;12!UBERON:0002417;2.38e-09;58!UBERON:0000916;2.38e-09;58!UBERON:0000072;1.33e-08;37!UBERON:0002369;1.42e-08;3!UBERON:0001235;1.42e-08;3!UBERON:0006858;1.42e-08;3!UBERON:0006853;2.14e-08;3!UBERON:0007685;2.14e-08;3!UBERON:0004134;2.14e-08;3!UBERON:0000353;1.91e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.13e-24,9;UBERON:0005172,5.81e-20,54;UBERON:0005173,5.81e-20,54;UBERON:0004810,9.33e-20,10;UBERON:0002417,2.70e-17,60;UBERON:0000916,2.70e-17,60;UBERON:0002113,7.10e-16,26;UBERON:0003918,7.10e-16,26;UBERON:0011143,7.10e-16,26;UBERON:0005095,7.10e-16,26;UBERON:0007687,7.10e-16,26;UBERON:0001851,2.15e-15,15;UBERON:0000489,9.87e-13,31;UBERON:0004211,1.65e-12,15;UBERON:0009773,1.65e-12,15;UBERON:0001231,1.65e-12,15;UBERON:0001285,1.65e-12,15;UBERON:0007684,1.65e-12,15;UBERON:0004208,1.65e-12,15;UBERON:0005177,1.21e-11,101;UBERON:0006555,1.32e-11,16;UBERON:0004819,1.32e-11,16;UBERON:0001557,2.33e-10,19;UBERON:0009569,8.40e-10,112;UBERON:0001225,1.20e-09,12;UBERON:0008987,1.20e-09,12;UBERON:0008947,5.19e-09,38;UBERON:0003258,5.19e-09,38;UBERON:0002369,1.45e-08,3;UBERON:0001235,1.45e-08,3;UBERON:0006858,1.45e-08,3;UBERON:0006853,1.69e-08,3;UBERON:0007685,1.69e-08,3;UBERON:0004134,1.69e-08,3;UBERON:0000353,1.76e-07,15;UBERON:0006554,3.01e-07,47;UBERON:0001008,4.96e-07,48 | |||
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|short_description=p@chr19:10688044..10688070,- | |||
}} |
Revision as of 18:35, 11 September 2013
Short description: | p@chr19:10688044..10688070, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:10688044..10688070, - |
Coexpression cluster: | C2474_mesothelioma_Hep2_clear_Renal_nonsmall_renal_lung |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 4.07e-37 | 19 |
epithelial cell | 1.68e-21 | 253 |
kidney tubule cell | 9.33e-20 | 10 |
nephron tubule epithelial cell | 9.33e-20 | 10 |
kidney cell | 2.20e-16 | 17 |
kidney epithelial cell | 2.20e-16 | 17 |
epithelial cell of nephron | 1.65e-12 | 15 |
kidney cortical cell | 1.20e-09 | 12 |
renal cortical epithelial cell | 1.20e-09 | 12 |
lining cell | 5.84e-09 | 58 |
barrier cell | 5.84e-09 | 58 |
brush border epithelial cell | 1.69e-08 | 3 |
kidney cortex tubule cell | 1.69e-08 | 3 |
epithelial cell of proximal tubule | 1.69e-08 | 3 |
squamous epithelial cell | 6.53e-08 | 63 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 5.76e-22 | 239 |
cancer | 1.13e-20 | 235 |
cell type cancer | 2.46e-18 | 143 |
carcinoma | 2.48e-18 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.