FFCP PHASE1:Hg19::chr19:4279396..4279410,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=56961|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30633|TSSclassifier=W|UniProt=Q96IW2|association_with_transcript=-248bp_to_AK055673_5end|coexpression_cluster_id=C1241|description=CAGE_peak_7_at_SHD_5end|id=chr19:4279396..4279410,+|ontology_enrichment_celltype=CL:0000784!1.43e-09!3|ontology_enrichment_celltype_v019=CL:0000784;1.22e-40;3!CL:0000333;1.72e-24;5!CL:0000451;1.39e-11;10!CL:0002321;1.42e-08;15!CL:0000123;5.37e-08;2!CL:0000242;5.37e-08;2!CL:0002575;6.80e-08;2!CL:0000188;6.89e-07;9|ontology_enrichment_celltype_v019_2=CL:0000784,1.31e-40,3;CL:0000451,1.42e-11,10;CL:0000242,5.37e-08,2;CL:0002575,6.15e-08,2;CL:0000188,6.79e-07,9|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:169;1.57e-20;6!DOID:171;1.41e-12;10!DOID:3095;6.96e-10;22!DOID:2994;6.96e-10;22|ontology_enrichment_disease_v019_2=DOID:169,1.63e-20,6;DOID:171,1.44e-12,10;DOID:3095,6.88e-10,22;DOID:2994,6.88e-10,22|ontology_enrichment_uberon=UBERON:0001950!7.15e-17!20;UBERON:0002619!3.91e-15!22;UBERON:0000073!5.29e-14!94;UBERON:0001016!5.29e-14!94;UBERON:0002020!7.09e-14!34;UBERON:0003528!7.09e-14!34;UBERON:0001893!8.01e-14!34;UBERON:0001049!4.59e-13!57;UBERON:0005068!4.59e-13!57;UBERON:0006241!4.59e-13!57;UBERON:0007135!4.59e-13!57;UBERON:0000956!4.93e-13!25;UBERON:0000203!4.93e-13!25;UBERON:0001869!5.62e-13!32;UBERON:0001017!5.69e-13!82;UBERON:0002791!1.52e-12!33;UBERON:0005743!4.41e-12!86;UBERON:0002780!7.10e-11!41;UBERON:0001890!7.10e-11!41;UBERON:0006240!7.10e-11!41;UBERON:0003080!1.56e-10!42;UBERON:0003075!5.42e-10!86;UBERON:0007284!5.42e-10!86;UBERON:0002616!8.55e-10!59;UBERON:0002346!2.67e-09!90;UBERON:0000955!1.25e-08!69;UBERON:0006238!1.25e-08!69;UBERON:0003056!2.92e-08!61;UBERON:0001872!4.16e-08!5;UBERON:0004121!5.21e-08!169;UBERON:0000924!1.19e-07!173;UBERON:0006601!1.19e-07!173|ontology_enrichment_uberon_v019=UBERON:0000013;1.72e-24;5!UBERON:0002410;1.72e-24;5!UBERON:0000010;6.59e-14;8!UBERON:0001134;4.77e-08;16!UBERON:0002036;4.77e-08;16|ontology_enrichment_uberon_v019_2=UBERON:0000013,1.79e-24,5;UBERON:0002410,1.79e-24,5;UBERON:0000010,6.74e-14,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,7.15471872916026,6.29194401858141,2.22874500797739,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74514739048685,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.09025525240368,0,0,0.964856007391714,0,0,0.596586391912706,3.82837753280971,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0.689486746482929,0,0.694499979733169,0,0.120596438625408,0,0,0.591095237907095,0.87754158861589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0.802577647298789,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0.391102765469606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0,0.124192805882767,0,0,0,0,0,3.74667924645505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20022211730523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68578179737669,7.00861274078432,0,2.62103131660833,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0,0,0.504143392443436,0.484100767249525,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0.546974809018219,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0.197318320688547,0,0,0,0,0,0.913158720509496,0,0,0,0,0.464965701472501,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0.102662806856247,1.1598144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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=56961 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30633 | |||
|TSSclassifier=W | |||
|UniProt=Q96IW2 | |||
|association_with_transcript=-248bp_to_AK055673_5end | |||
|coexpression_cluster_id=C1241 | |||
|description=CAGE_peak_7_at_SHD_5end | |||
|id=chr19:4279396..4279410,+ | |||
|ontology_enrichment_celltype=CL:0000784!1.43e-09!3 | |||
|ontology_enrichment_celltype_v019=CL:0000784;1.22e-40;3!CL:0000333;1.72e-24;5!CL:0000451;1.39e-11;10!CL:0002321;1.42e-08;15!CL:0000123;5.37e-08;2!CL:0000242;5.37e-08;2!CL:0002575;6.80e-08;2!CL:0000188;6.89e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,1.31e-40,3;CL:0000451,1.42e-11,10;CL:0000242,5.37e-08,2;CL:0002575,6.15e-08,2;CL:0000188,6.79e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;1.57e-20;6!DOID:171;1.41e-12;10!DOID:3095;6.96e-10;22!DOID:2994;6.96e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.63e-20,6;DOID:171,1.44e-12,10;DOID:3095,6.88e-10,22;DOID:2994,6.88e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0001950!7.15e-17!20;UBERON:0002619!3.91e-15!22;UBERON:0000073!5.29e-14!94;UBERON:0001016!5.29e-14!94;UBERON:0002020!7.09e-14!34;UBERON:0003528!7.09e-14!34;UBERON:0001893!8.01e-14!34;UBERON:0001049!4.59e-13!57;UBERON:0005068!4.59e-13!57;UBERON:0006241!4.59e-13!57;UBERON:0007135!4.59e-13!57;UBERON:0000956!4.93e-13!25;UBERON:0000203!4.93e-13!25;UBERON:0001869!5.62e-13!32;UBERON:0001017!5.69e-13!82;UBERON:0002791!1.52e-12!33;UBERON:0005743!4.41e-12!86;UBERON:0002780!7.10e-11!41;UBERON:0001890!7.10e-11!41;UBERON:0006240!7.10e-11!41;UBERON:0003080!1.56e-10!42;UBERON:0003075!5.42e-10!86;UBERON:0007284!5.42e-10!86;UBERON:0002616!8.55e-10!59;UBERON:0002346!2.67e-09!90;UBERON:0000955!1.25e-08!69;UBERON:0006238!1.25e-08!69;UBERON:0003056!2.92e-08!61;UBERON:0001872!4.16e-08!5;UBERON:0004121!5.21e-08!169;UBERON:0000924!1.19e-07!173;UBERON:0006601!1.19e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;1.72e-24;5!UBERON:0002410;1.72e-24;5!UBERON:0000010;6.59e-14;8!UBERON:0001134;4.77e-08;16!UBERON:0002036;4.77e-08;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,1.79e-24,5;UBERON:0002410,1.79e-24,5;UBERON:0000010,6.74e-14,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,7.15471872916026,6.29194401858141,2.22874500797739,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74514739048685,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.09025525240368,0,0,0.964856007391714,0,0,0.596586391912706,3.82837753280971,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0.689486746482929,0,0.694499979733169,0,0.120596438625408,0,0,0.591095237907095,0.87754158861589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0.802577647298789,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0.391102765469606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0,0.124192805882767,0,0,0,0,0,3.74667924645505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20022211730523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68578179737669,7.00861274078432,0,2.62103131660833,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0,0,0.504143392443436,0.484100767249525,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0.546974809018219,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0.197318320688547,0,0,0,0,0,0.913158720509496,0,0,0,0,0.464965701472501,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0.102662806856247,1.1598144313382,0,0,8.7538341071002,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0,0,1.90047751517155,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p7@SHD | |||
}} |
Revision as of 20:55, 11 September 2013
Short description: | p7@SHD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_SHD_5end |
Coexpression cluster: | C1241_neuroblastoma_small_Skeletal_Dendritic_Pericytes_merkel_mesenchymal |
Association with transcript: | -248bp_to_AK055673_5end |
EntrezGene: | SHD |
HGNC: | 30633 |
UniProt: | Q96IW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 1.31e-40 | 3 |
dendritic cell | 1.42e-11 | 10 |
Merkel cell | 5.37e-08 | 2 |
central nervous system pericyte | 6.15e-08 | 2 |
cell of skeletal muscle | 6.79e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 1.79e-24 | 5 |
autonomic nervous system | 1.79e-24 | 5 |
peripheral nervous system | 6.74e-14 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.63e-20 | 6 |
neuroectodermal tumor | 1.44e-12 | 10 |
germ cell and embryonal cancer | 6.88e-10 | 22 |
germ cell cancer | 6.88e-10 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.