FFCP PHASE1:Hg19::chr19:3576938..3576962,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10362|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5002|TSSclassifier=S|UniProt=|association_with_transcript=55bp_to_ENST00000461099_5end|description=CAGE_peak_9_at_HMG20B_5end|id=chr19:3576938..3576962,+|ontology_enrichment_celltype=CL:0000148!4.64e-08!10;CL:0000541!4.64e-08!10|ontology_enrichment_celltype_v019=CL:0002600;2.70e-13;2!CL:0000453;3.93e-12;5!CL:0000990;1.74e-11;8!CL:0000148;1.22e-10;10!CL:0002567;1.49e-09;3!CL:0000451;2.02e-09;10!CL:0000147;1.27e-07;14|ontology_enrichment_celltype_v019_2=CL:0002600,8.65e-14,2;CL:0000453,3.32e-12,5;CL:0000990,1.69e-11,8;CL:0000148,1.11e-10,10;CL:0000541,1.11e-10,10;CL:0002567,1.09e-09,3;CL:0000451,1.98e-09,10;CL:0000147,1.19e-07,14|ontology_enrichment_development_v019=UBERON:0005425;1.74e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0002370;7.59e-14;2!UBERON:0005058;7.59e-14;2!UBERON:0009113;7.59e-14;2!UBERON:0000996;1.74e-07;1!UBERON:0000941;1.74e-07;1!UBERON:0001785;1.74e-07;1!UBERON:0002464;1.74e-07;1!UBERON:0004904;1.74e-07;1!UBERON:0001021;1.74e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.48e-07,1;UBERON:0001785,1.48e-07,1;UBERON:0002464,1.48e-07,1;UBERON:0004904,1.48e-07,1;UBERON:0001021,1.48e-07,1;UBERON:0003902,1.48e-07,1;UBERON:0005425,1.48e-07,1;UBERON:0000996,1.80e-07,1;UBERON:0002370,1.98e-07,4;UBERON:0005058,1.98e-07,4;UBERON:0009113,1.98e-07,4;UBERON:0003295,1.98e-07,4;UBERON:0005562,1.98e-07,4|phase1_expression=0,0,0,1.0007329835313,0,0,2.53299878168311,0,0,0,0,0.218441372130172,0.527533956456907,0.37129905888014,0.662794751455832,0,0,0,0.487932798790507,0.61560529038394,0.408001382488506,0,0,0.136874425072884,0,0,0,0.0787107813136792,0.393364276848904,0,0.154816123316076,0,0.30120591877825,0,0.0774672005803016,0,0.293600439334847,0.553995408531877,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0.306083892370903,0.320929027076094,0,0,0,0,0,0,0.622822248995575,0,0,0.434377689410233,0,0,0,0.422510572623884,0.212604299965044,0,0.22465726229299,0.300353785683013,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0.289803085735052,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0.0945348171640679,0.443458794925128,0.175669571386252,0.0654895377488563,0,0.370784442784429,1.29818957461873,0.174129737299267,0.398873881556595,0.238490624305342,0,0,0,0.860234595106124,0.347140501607594,0,0,0.275118041940067,0,0,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0.151357427644931,0,0.234321431833797,0.312160076830321,0,0.149448680551801,0,0,0,0.204154171254893,0.245668634623536,0.619954687054593,0,0,0,2.15585442544872,0.168336113954066,0,0,0,0,0,0,0,0,0.211931901159562,0,0.103052529238439,0,0,0.168776332241266,0,0.252433774244115,0.0920498986422993,0,0.355009592516614,0.201504196455281,0.169560592310488,0.57978255948989,0,0.286804595389004,0.243947412259191,0.132529768321485,0.116193942869518,0.621966330092223,0.504641701751257,0.72995471815166,0,0,0,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0.110293972732394,0.217879444092406,0,0.269662616320329,0.196221465125346,0,0,0,0.4115740113314,0,0,0,1.18157981336281,0,0,0,0.219500570817251,0,0.100528972411631,0.185176890317059,0,0,0,0.115930404975077,0.117408694235822,0.144366447761074,0,0,0,0,0.246217006087397,0.936017060556951,0.148631162288728,0,0.16798212819886,0.141775097242386,0.0895585227028483,0.290633938513962,0,0,0.176096868026452,0,0,0,0.63497894292169,0.381988425558278,10.5495702489042,1.71072446022705,3.90744472272629,0.300343057843917,2.00078502841405,0.112131084345361,0.43596006883328,0,0,0,0,0.26593811658487,0,0.771622122786426,0,0,0.142977993658148,0.542621605391443,0,0,0.355391948742546,0.791951872933429,0,0,0,1.2162378064119,0.502257091432126,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,1.30139853857622,0,0,0.637938751653163,0,2.99161459204025,0,0.12269149171914,1.00034104211935,0,0.415941723061614,0.178428988797162,0,0.234282829985426,0,0,0,0,0.184369168541703,0.173767228936166,0,0,0.206768026122887,0.431428401637234,0,0.303127571446259,0,0,0.248107807818777,0,0,0.128139149255701,0,0,0,0.154209693802656,0,0,0,0.116210378459959,0,0,0,0.114814448164607,0,0.131124414959424,0,0.0770153371044148,0,1.46139224653261,0.105551628892876,0,0.170093705276516,0.215915916102139,1.54227252690289,0.270946437543853,0,0,0,0.223874754722178,0.219259876645935,0,0,0.328014645699706,0,0,0.0915694648183434,0,0,0.650060246036521,0,0,0.154048617114644,0.307007349452259,0,0.322260734604821,0.145016693914229,0.340906509664404,0,0.165284915360978,0,0,0,0,0,0,0.308033580176089,0,0,0,0.143124886741991,0.372158369359667,0,0,0.511795582622668,0,0.318203247925937,0,0.179872457583315,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10362 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5002 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=55bp_to_ENST00000461099_5end | |||
|description=CAGE_peak_9_at_HMG20B_5end | |||
|id=chr19:3576938..3576962,+ | |||
|ontology_enrichment_celltype=CL:0000148!4.64e-08!10;CL:0000541!4.64e-08!10 | |||
|ontology_enrichment_celltype_v019=CL:0002600;2.70e-13;2!CL:0000453;3.93e-12;5!CL:0000990;1.74e-11;8!CL:0000148;1.22e-10;10!CL:0002567;1.49e-09;3!CL:0000451;2.02e-09;10!CL:0000147;1.27e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002600,8.65e-14,2;CL:0000453,3.32e-12,5;CL:0000990,1.69e-11,8;CL:0000148,1.11e-10,10;CL:0000541,1.11e-10,10;CL:0002567,1.09e-09,3;CL:0000451,1.98e-09,10;CL:0000147,1.19e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.74e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;7.59e-14;2!UBERON:0005058;7.59e-14;2!UBERON:0009113;7.59e-14;2!UBERON:0000996;1.74e-07;1!UBERON:0000941;1.74e-07;1!UBERON:0001785;1.74e-07;1!UBERON:0002464;1.74e-07;1!UBERON:0004904;1.74e-07;1!UBERON:0001021;1.74e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.48e-07,1;UBERON:0001785,1.48e-07,1;UBERON:0002464,1.48e-07,1;UBERON:0004904,1.48e-07,1;UBERON:0001021,1.48e-07,1;UBERON:0003902,1.48e-07,1;UBERON:0005425,1.48e-07,1;UBERON:0000996,1.80e-07,1;UBERON:0002370,1.98e-07,4;UBERON:0005058,1.98e-07,4;UBERON:0009113,1.98e-07,4;UBERON:0003295,1.98e-07,4;UBERON:0005562,1.98e-07,4 | |||
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| |||
|short_description=p9@HMG20B | |||
}} |
Revision as of 20:08, 11 September 2013
Short description: | p9@HMG20B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_HMG20B_5end |
Coexpression cluster: | NA |
Association with transcript: | 55bp_to_ENST00000461099_5end |
EntrezGene: | HMG20B |
HGNC: | 5002 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of trachea | 8.65e-14 | 2 |
Langerhans cell | 3.32e-12 | 5 |
conventional dendritic cell | 1.69e-11 | 8 |
melanocyte | 1.11e-10 | 10 |
melanoblast | 1.11e-10 | 10 |
light melanocyte | 1.09e-09 | 3 |
dendritic cell | 1.98e-09 | 10 |
pigment cell | 1.19e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.48e-07 | 1 |
cranial nerve | 1.48e-07 | 1 |
nerve trunk | 1.48e-07 | 1 |
nerve connecting eye with brain | 1.48e-07 | 1 |
nerve | 1.48e-07 | 1 |
retinal neural layer | 1.48e-07 | 1 |
presumptive neural retina | 1.48e-07 | 1 |
vagina | 1.80e-07 | 1 |
thymus | 1.98e-07 | 4 |
hemolymphoid system gland | 1.98e-07 | 4 |
thymic region | 1.98e-07 | 4 |
pharyngeal gland | 1.98e-07 | 4 |
thymus primordium | 1.98e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.