FFCP PHASE1:Hg19::chr19:3574157..3574180,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10362|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5002|TSSclassifier=S|UniProt=|association_with_transcript=-110bp_to_ENST00000486028_5end|coexpression_cluster_id=C88|description=CAGE_peak_4_at_HMG20B_5end|id=chr19:3574157..3574180,+|ontology_enrichment_celltype=CL:0000148!5.69e-12!10;CL:0000541!5.69e-12!10;CL:0000990!2.50e-09!8;CL:0000147!1.56e-07!14;CL:0000451!3.94e-07!10;CL:0000453!7.70e-07!5|ontology_enrichment_celltype_v019=CL:0000148;1.07e-40;10!CL:0000147;9.47e-29;14!CL:0000453;8.98e-21;5!CL:0002567;1.08e-20;3!CL:0000710;8.91e-20;20!CL:0000075;2.43e-14;27!CL:0000990;1.29e-11;8!CL:0002077;3.06e-10;34!CL:0000451;1.59e-09;10!CL:0002566;5.22e-08;1|ontology_enrichment_celltype_v019_2=CL:0000148,1.35e-40,10;CL:0000541,1.35e-40,10;CL:0000147,1.12e-28,14;CL:0000453,1.05e-20,5;CL:0002567,1.11e-20,3;CL:0000710,9.98e-20,20;CL:0000075,2.64e-14,27;CL:0000990,1.40e-11,8;CL:0002077,4.11e-11,34;CL:0000451,1.70e-09,10;CL:0000333,1.55e-08,41;CL:0002566,5.22e-08,1;CL:0000066,9.39e-07,253|ontology_enrichment_development_v019=UBERON:0008947;6.97e-16;29|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1909;1.35e-13;2!DOID:5093;3.77e-07;4!DOID:1612;3.77e-07;4|ontology_enrichment_disease_v019_2=DOID:1909,1.54e-13,2;DOID:305,2.22e-07,106;DOID:5093,3.28e-07,4;DOID:1612,3.28e-07,4;DOID:0050687,8.89e-07,143|ontology_enrichment_uberon=UBERON:0001737!5.16e-11!9;UBERON:0001557!7.88e-09!19|ontology_enrichment_uberon_v019=UBERON:0001737;2.98e-54;9!UBERON:0001557;2.98e-54;9!UBERON:0000072;2.37e-13;37!UBERON:0000065;2.20e-11;44|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.46e-54,9;UBERON:0001557,3.95e-25,19;UBERON:0008947,1.14e-14,38;UBERON:0003258,1.14e-14,38;UBERON:0000072,1.56e-11,47;UBERON:0000065,8.12e-10,54|phase1_expression=0,0,0.140954404095971,0,0.893922188854576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0.257575567634187,0.436194716338694,0,0,0,0.411167888021826,0.309706370895104,0,0.256160706529101,0.236482229888585,0,0,0,0.752969358170419,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0.112328631146495,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,1.17447437874188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25618263945135,0,0.164437904603676,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0.221729397462564,0,0.0654895377488563,0,0,0.324547393654683,0.174129737299267,0.531831842075461,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0.132409180813219,1.43418310374407,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0.355009592516614,0,0,0.386521706326594,0,0,0.365921118388786,0.265059536642971,0.348581828608555,0.621966330092223,1.00928340350251,0,0,0,0,0,0,1.8929088006375,1.85443159085912,2.16909926895134,1.65440959098591,1.52515610864684,1.66089433377768,2.02246962240247,3.53198637225623,2.30848294167834,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0,0,0,0,2.37061319387782,1.71697232418975,0,0.702012795417713,0.297262324577456,0,0.16798212819886,0,0,0,0,0,0.088048434013226,0,0,0,45.6549859960695,93.9691526873363,82.0522130470329,44.4788359659034,82.1591666699555,2.70308752059526,30.2976018588413,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0.099972991182057,0,0,2.10833939483032,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0.686286847621712,0.206768026122887,0,0.320182673410333,0,0,0,0,0,0,0,0.511707249066704,0.160853921143607,0,0,0.355123450626254,0.0821271560138091,0.519254429183621,0,0.120859449591622,0.200506470303285,0.276242966807689,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0.515205058238611,0.183138929636687,0,0,0.650060246036521,0,0.096670718292122,0,0,0.137836572484531,0.107420244868274,0,0.0852266274161009,0,0,0,0,0.10115778085555,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0.282810863907425,0,0,0.66343897524122,0,0.578775534266688,1.9676842561399,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0.144269212976445,0,0.318852545457645,0,0.191505370132367,0,0,0,0,0,0,0,0.1605880751037,0,0,0.343505344755765,0,0.447352215784832,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0.179736702294654,0,0,0,0,0,0,0.0927680981618513,0,0,0.262379999988587,0,0,0,0.709163045303809,0,0,0,0,0,0,0,0,0,0.762569244632931,0.139423744278603,0.0769502585037971,0.113942055847001,0,0.0897576444097721,0.651884231532048,0.957003479195758,0.366390373607449,0.533034776018635,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10362 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5002 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-110bp_to_ENST00000486028_5end | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_4_at_HMG20B_5end | |||
|id=chr19:3574157..3574180,+ | |||
|ontology_enrichment_celltype=CL:0000148!5.69e-12!10;CL:0000541!5.69e-12!10;CL:0000990!2.50e-09!8;CL:0000147!1.56e-07!14;CL:0000451!3.94e-07!10;CL:0000453!7.70e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000148;1.07e-40;10!CL:0000147;9.47e-29;14!CL:0000453;8.98e-21;5!CL:0002567;1.08e-20;3!CL:0000710;8.91e-20;20!CL:0000075;2.43e-14;27!CL:0000990;1.29e-11;8!CL:0002077;3.06e-10;34!CL:0000451;1.59e-09;10!CL:0002566;5.22e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.35e-40,10;CL:0000541,1.35e-40,10;CL:0000147,1.12e-28,14;CL:0000453,1.05e-20,5;CL:0002567,1.11e-20,3;CL:0000710,9.98e-20,20;CL:0000075,2.64e-14,27;CL:0000990,1.40e-11,8;CL:0002077,4.11e-11,34;CL:0000451,1.70e-09,10;CL:0000333,1.55e-08,41;CL:0002566,5.22e-08,1;CL:0000066,9.39e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;6.97e-16;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;1.35e-13;2!DOID:5093;3.77e-07;4!DOID:1612;3.77e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,1.54e-13,2;DOID:305,2.22e-07,106;DOID:5093,3.28e-07,4;DOID:1612,3.28e-07,4;DOID:0050687,8.89e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!5.16e-11!9;UBERON:0001557!7.88e-09!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.98e-54;9!UBERON:0001557;2.98e-54;9!UBERON:0000072;2.37e-13;37!UBERON:0000065;2.20e-11;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.46e-54,9;UBERON:0001557,3.95e-25,19;UBERON:0008947,1.14e-14,38;UBERON:0003258,1.14e-14,38;UBERON:0000072,1.56e-11,47;UBERON:0000065,8.12e-10,54 | |||
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| |||
|short_description=p4@HMG20B | |||
}} |
Revision as of 20:07, 11 September 2013
Short description: | p4@HMG20B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_HMG20B_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | -110bp_to_ENST00000486028_5end |
EntrezGene: | HMG20B |
HGNC: | 5002 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.35e-40 | 10 |
melanoblast | 1.35e-40 | 10 |
pigment cell | 1.12e-28 | 14 |
Langerhans cell | 1.05e-20 | 5 |
light melanocyte | 1.11e-20 | 3 |
neurecto-epithelial cell | 9.98e-20 | 20 |
columnar/cuboidal epithelial cell | 2.64e-14 | 27 |
conventional dendritic cell | 1.40e-11 | 8 |
ecto-epithelial cell | 4.11e-11 | 34 |
dendritic cell | 1.70e-09 | 10 |
migratory neural crest cell | 1.55e-08 | 41 |
dark melanocyte | 5.22e-08 | 1 |
epithelial cell | 9.39e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.46e-54 | 9 |
upper respiratory tract | 3.95e-25 | 19 |
respiratory primordium | 1.14e-14 | 38 |
endoderm of foregut | 1.14e-14 | 38 |
segment of respiratory tract | 1.56e-11 | 47 |
respiratory tract | 8.12e-10 | 54 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.54e-13 | 2 |
carcinoma | 2.22e-07 | 106 |
thoracic cancer | 3.28e-07 | 4 |
breast cancer | 3.28e-07 | 4 |
cell type cancer | 8.89e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.