FFCP PHASE1:Hg19::chr18:56247427..56247457,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=115701|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20565|TSSclassifier=S|UniProt=|association_with_transcript=-26bp_to_AK125243_5end|coexpression_cluster_id=C2468|description=CAGE_peak_14_at_ALPK2_5end|id=chr18:56247427..56247457,-|ontology_enrichment_celltype=CL:0002057!2.37e-15!42;CL:0000860!9.31e-15!45;CL:0000128!4.08e-09!7;CL:0000126!4.08e-09!7;CL:0000127!4.08e-09!7;CL:0002453!4.08e-09!7;CL:0002009!4.26e-08!65;CL:0002194!6.83e-08!63;CL:0000576!6.83e-08!63;CL:0000040!6.83e-08!63;CL:0000559!6.83e-08!63;CL:0000557!8.78e-07!71|ontology_enrichment_celltype_v019=CL:0000860;4.33e-31;33!CL:0002057;4.33e-31;33!CL:0000473;4.17e-20;39!CL:0000234;4.17e-20;39!CL:0002605;1.54e-14;3!CL:0000576;3.04e-14;48!CL:0000453;4.47e-09;5!CL:0000243;7.22e-09;15!CL:0000125;7.22e-09;15!CL:0000095;7.28e-08;17!CL:0000766;1.34e-07;69|ontology_enrichment_celltype_v019_2=CL:0000860,2.73e-25,42;CL:0002057,2.73e-25,42;CL:0000473,1.25e-21,48;CL:0000234,1.25e-21,48;CL:0002194,1.63e-16,59;CL:0000576,1.63e-16,59;CL:0000040,1.63e-16,59;CL:0000559,1.63e-16,59;CL:0002009,7.43e-16,61;CL:0002605,1.42e-14,3;CL:0000839,2.21e-14,66;CL:0000557,4.10e-14,67;CL:0000766,6.96e-13,72;CL:0000763,4.19e-11,108;CL:0000049,4.19e-11,108;CL:0000453,4.48e-09,5;CL:0000243,6.88e-09,15;CL:0000125,6.88e-09,15;CL:0000030,6.88e-09,15;CL:0000339,6.88e-09,15;CL:0000738,6.28e-08,136;CL:0000095,6.97e-08,17;CL:0000123,6.97e-08,17;CL:0002087,9.49e-07,115|ontology_enrichment_development_v019=CL:0002057;4.33e-17;42!CL:0000339;7.22e-09;15|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001737!8.60e-07!9|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.13e-12,76;UBERON:0001474,7.12e-11,82;UBERON:0004765,1.37e-09,90;UBERON:0001434,2.06e-09,100;UBERON:0002405,3.63e-09,93;UBERON:0002390,1.61e-08,98;UBERON:0003061,1.61e-08,98;UBERON:0002193,2.08e-07,108|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0.861847406537515,0.612002073732759,0.626909442956176,6.5834277040143,3.96935832711364,4.3939923858181,0.458480434487708,0.328402357799783,0.314843125254717,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0.242584061187816,0.232429036905685,2.46700732813095,0.929119112685311,3.16461631554365,2.0492856522328,1.89185783910868,1.37898272294647,2.5819387343353,1.35426486594342,0.752969358170419,1.09162460023138,0.674170453335254,3.06083892370903,3.53021929783703,1.91801137739712,0,0.797854630486527,0.426224750532694,0.870627715885752,2.26954089876456,1.24564449799115,1.7587406567972,3.65038042894141,1.52032191293582,0,1.84138817993782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0.175669571386252,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,1.72131935057184,0,0,0,0,0,0,0,0,0.454072282934794,0,0,0,0,0,0,0,0.140450806702248,0.408308342509787,0,0,0,0.989067717114227,0,0,0,0.125118519871964,0,0,1.22595118319608,0.45071417671979,0,0.179389635688862,2.56268866582281,0.847727604638247,0.600182192168805,0.721367704669072,0.772921620136887,0.930584281657949,0,0,0,2.11714766877288,0.323292113637624,0.710019185033229,0.201504196455281,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0.464367928031979,0,0.236613600079688,0.168584690078102,0.241011029883482,0.441175890929576,0,0.237270619111097,0.539325232640658,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448524337381443,0,0,0.129271715757778,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0.24538298343828,0,0,1.66376689224646,0.356857977594324,0.630809660135739,1.52283839490527,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.106727557803444,0,0,0,0,0.460385919864187,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229628896329213,0.364182336013434,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0.145016693914229,0,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,1.2655176988749,0.762520775695299,0,0,0,0,0.719489830333259,0.274537029736055,0.235624804691373,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0.0982490410131212,0,0,0.211107635297664,0.329294892959902,0,1.74967360122491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97790605528978,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,1.55519793830904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0.347249989866585,0,0,0,0,0,0,0.21787692703798,0,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.6688470977141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=115701 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20565 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-26bp_to_AK125243_5end | |||
|coexpression_cluster_id=C2468 | |||
|description=CAGE_peak_14_at_ALPK2_5end | |||
|id=chr18:56247427..56247457,- | |||
|ontology_enrichment_celltype=CL:0002057!2.37e-15!42;CL:0000860!9.31e-15!45;CL:0000128!4.08e-09!7;CL:0000126!4.08e-09!7;CL:0000127!4.08e-09!7;CL:0002453!4.08e-09!7;CL:0002009!4.26e-08!65;CL:0002194!6.83e-08!63;CL:0000576!6.83e-08!63;CL:0000040!6.83e-08!63;CL:0000559!6.83e-08!63;CL:0000557!8.78e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.33e-31;33!CL:0002057;4.33e-31;33!CL:0000473;4.17e-20;39!CL:0000234;4.17e-20;39!CL:0002605;1.54e-14;3!CL:0000576;3.04e-14;48!CL:0000453;4.47e-09;5!CL:0000243;7.22e-09;15!CL:0000125;7.22e-09;15!CL:0000095;7.28e-08;17!CL:0000766;1.34e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.73e-25,42;CL:0002057,2.73e-25,42;CL:0000473,1.25e-21,48;CL:0000234,1.25e-21,48;CL:0002194,1.63e-16,59;CL:0000576,1.63e-16,59;CL:0000040,1.63e-16,59;CL:0000559,1.63e-16,59;CL:0002009,7.43e-16,61;CL:0002605,1.42e-14,3;CL:0000839,2.21e-14,66;CL:0000557,4.10e-14,67;CL:0000766,6.96e-13,72;CL:0000763,4.19e-11,108;CL:0000049,4.19e-11,108;CL:0000453,4.48e-09,5;CL:0000243,6.88e-09,15;CL:0000125,6.88e-09,15;CL:0000030,6.88e-09,15;CL:0000339,6.88e-09,15;CL:0000738,6.28e-08,136;CL:0000095,6.97e-08,17;CL:0000123,6.97e-08,17;CL:0002087,9.49e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;4.33e-17;42!CL:0000339;7.22e-09;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!8.60e-07!9 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.13e-12,76;UBERON:0001474,7.12e-11,82;UBERON:0004765,1.37e-09,90;UBERON:0001434,2.06e-09,100;UBERON:0002405,3.63e-09,93;UBERON:0002390,1.61e-08,98;UBERON:0003061,1.61e-08,98;UBERON:0002193,2.08e-07,108 | |||
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|short_description=p14@ALPK2 | |||
}} |
Revision as of 17:52, 11 September 2013
Short description: | p14@ALPK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_ALPK2_5end |
Coexpression cluster: | C2468_clear_migratory_mesothelioma_Astrocyte_glioblastoma_alveolar_renal |
Association with transcript: | -26bp_to_AK125243_5end |
EntrezGene: | ALPK2 |
HGNC: | 20565 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.73e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.73e-25 | 42 |
defensive cell | 1.25e-21 | 48 |
phagocyte | 1.25e-21 | 48 |
monopoietic cell | 1.63e-16 | 59 |
monocyte | 1.63e-16 | 59 |
monoblast | 1.63e-16 | 59 |
promonocyte | 1.63e-16 | 59 |
macrophage dendritic cell progenitor | 7.43e-16 | 61 |
astrocyte of the cerebral cortex | 1.42e-14 | 3 |
myeloid lineage restricted progenitor cell | 2.21e-14 | 66 |
granulocyte monocyte progenitor cell | 4.10e-14 | 67 |
myeloid leukocyte | 6.96e-13 | 72 |
myeloid cell | 4.19e-11 | 108 |
common myeloid progenitor | 4.19e-11 | 108 |
Langerhans cell | 4.48e-09 | 5 |
glial cell (sensu Vertebrata) | 6.88e-09 | 15 |
glial cell | 6.88e-09 | 15 |
glioblast | 6.88e-09 | 15 |
glioblast (sensu Vertebrata) | 6.88e-09 | 15 |
leukocyte | 6.28e-08 | 136 |
neuron associated cell | 6.97e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 6.97e-08 | 17 |
nongranular leukocyte | 9.49e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.13e-12 | 76 |
bone element | 7.12e-11 | 82 |
skeletal element | 1.37e-09 | 90 |
skeletal system | 2.06e-09 | 100 |
immune system | 3.63e-09 | 93 |
hematopoietic system | 1.61e-08 | 98 |
blood island | 1.61e-08 | 98 |
hemolymphoid system | 2.08e-07 | 108 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.