FFCP PHASE1:Hg19::chr17:48264267..48264295,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1277|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2197|TSSclassifier=S|UniProt=|association_with_transcript=-93bp_to_ENST00000510710_5end|coexpression_cluster_id=C59|description=CAGE_peak_24_at_COL1A1_5end|id=chr17:48264267..48264295,-|ontology_enrichment_celltype=CL:0000055!3.57e-36!180;CL:0000057!5.71e-22!75;CL:0000183!1.33e-14!59;CL:0000680!5.63e-14!57;CL:0000056!5.63e-14!57;CL:0000355!5.63e-14!57;CL:0000187!2.69e-13!54;CL:0000393!2.48e-12!60;CL:0000211!2.48e-12!60;CL:0000048!1.71e-10!430;CL:0000723!9.06e-10!436;CL:0000192!1.21e-09!42;CL:0000514!1.21e-09!42;CL:0000034!1.83e-09!444;CL:0002334!1.46e-08!12;CL:0002371!3.63e-08!591;CL:0000499!6.80e-08!27;CL:0000144!7.03e-08!625;CL:0002620!4.03e-07!23|ontology_enrichment_celltype_v019=CL:0002334;3.17e-10;12!CL:0000134;3.78e-10;55!CL:0000723;2.44e-09;61!CL:0000048;3.06e-09;58!CL:0002320;4.68e-09;188!CL:0000499;5.53e-09;28!CL:0000057;1.56e-08;73!CL:0000187;8.46e-08;55!CL:0000034;3.60e-07;69!CL:0002570;3.81e-07;8!CL:0000192;4.11e-07;43!CL:0000327;5.76e-07;15|ontology_enrichment_celltype_v019_2=CL:0000057,2.96e-21,76;CL:0000048,1.50e-16,427;CL:0000723,1.28e-15,433;CL:0000034,1.99e-14,441;CL:0000680,1.07e-13,58;CL:0000056,1.07e-13,58;CL:0000355,1.07e-13,58;CL:0000187,1.83e-13,55;CL:0000393,7.18e-11,61;CL:0000211,7.18e-11,61;CL:0002334,3.16e-10,12;CL:0000192,1.20e-09,43;CL:0000514,1.20e-09,43;CL:0002320,2.22e-09,361;CL:0000499,4.80e-09,28;CL:0000134,1.06e-07,354;CL:0002570,4.10e-07,8;CL:0000327,5.30e-07,15|ontology_enrichment_development_v019=CL:0000355;2.55e-07;58!CL:0000514;4.11e-07;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;2.64e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,2.62e-07,14|ontology_enrichment_uberon=UBERON:0000914!1.85e-15!83;UBERON:0002329!1.85e-15!83;UBERON:0003077!1.85e-15!83;UBERON:0003059!1.85e-15!83;UBERON:0007282!1.85e-15!83;UBERON:0009618!1.85e-15!83;UBERON:0007285!1.85e-15!83;UBERON:0002385!1.56e-14!63;UBERON:0001015!1.56e-14!63;UBERON:0000383!1.56e-14!63;UBERON:0001134!1.68e-14!61;UBERON:0002036!1.68e-14!61;UBERON:0003082!1.68e-14!61;UBERON:0004290!1.90e-13!70;UBERON:0005256!7.35e-13!143;UBERON:0000486!1.82e-11!82;UBERON:0002100!1.63e-08!216;UBERON:0001013!6.20e-08!14;UBERON:0000475!1.31e-07!365;UBERON:0003102!2.83e-07!95|ontology_enrichment_uberon_v019=UBERON:0002384;4.60e-09;198!UBERON:0001013;1.97e-08;14!UBERON:0004457;9.72e-07;9!UBERON:0000042;9.72e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0001134,4.45e-14,62;UBERON:0002036,4.45e-14,62;UBERON:0003082,4.45e-14,62;UBERON:0002385,3.48e-13,64;UBERON:0001015,3.48e-13,64;UBERON:0000383,3.48e-13,64;UBERON:0007524,3.06e-12,73;UBERON:0002329,5.04e-12,71;UBERON:0003059,5.04e-12,71;UBERON:0007282,5.04e-12,71;UBERON:0004290,5.04e-12,71;UBERON:0009618,5.04e-12,71;UBERON:0007503,9.28e-12,78;UBERON:0003077,1.17e-11,72;UBERON:0007285,1.17e-11,72;UBERON:0003104,5.92e-10,160;UBERON:0009142,5.92e-10,160;UBERON:0000486,8.70e-10,83;UBERON:0005256,1.03e-09,122;UBERON:0002384,2.27e-09,371;UBERON:0001013,1.60e-08,14;UBERON:0000926,1.92e-07,315;UBERON:0004120,1.92e-07,315;UBERON:0006603,1.92e-07,315;UBERON:0002199,7.79e-07,46;UBERON:0002416,7.79e-07,46|phase1_expression=15.6243406172679,19.4831476740795,26.4994279700426,6.00439790118782,14.7497161161005,1.74467704820074,63.3249695420776,3.79031924056099,1.56711376919903,0.737201809504527,0,0.873765488520689,5.53910654279752,2.97039247104112,1.98838425436749,1.34465029290355,1.20538905604795,0.730310090387373,0.975865597581014,1.47745269692145,3.4680117511523,3.76145665773705,0,0.410623275218653,0.87879847716362,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.68280343881454,6.26526553033299,4.69870898099936,8.52274448081012,22.4512104389277,22.2680065174308,11.1926020169606,0.661743720148475,3.54767035940102,3.68906099911129,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.8728219712034,18.3614241913641,4.50191214764944,49.6227353895448,19.5067610209096,3.92474320099615,3.20246987189115,40.4534779404142,2.17847724779836,2.15537075311501,0.817309515567294,6.81108424402191,3.45705554687999,0.234321431833797,0.936480230490962,0,2.09228152772521,0.469737994575059,0.485618833104395,0,1.02077085627447,1.35117749042945,2.27316718586684,58.2121400068206,50.9369874313827,0.910161361938026,11.4978902690598,0.336672227908132,1.7516592782075,0.277064115484183,5.26773145057006,13.1789752193578,17.5778528920718,2.49550802952046,7.5343646989322,15.1625746061183,8.05341224406335,7.50227740211006,3.19462840639161,5.15281080091258,6.88632368426882,8.77636927654584,5.16416127354353,3.28163906517349,6.53554280360325,6.46584227275248,9.58525899794859,3.82857973265033,1.18692414617341,0.193260853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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-93bp_to_ENST00000510710_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_24_at_COL1A1_5end | |||
|id=chr17:48264267..48264295,- | |||
|ontology_enrichment_celltype=CL:0000055!3.57e-36!180;CL:0000057!5.71e-22!75;CL:0000183!1.33e-14!59;CL:0000680!5.63e-14!57;CL:0000056!5.63e-14!57;CL:0000355!5.63e-14!57;CL:0000187!2.69e-13!54;CL:0000393!2.48e-12!60;CL:0000211!2.48e-12!60;CL:0000048!1.71e-10!430;CL:0000723!9.06e-10!436;CL:0000192!1.21e-09!42;CL:0000514!1.21e-09!42;CL:0000034!1.83e-09!444;CL:0002334!1.46e-08!12;CL:0002371!3.63e-08!591;CL:0000499!6.80e-08!27;CL:0000144!7.03e-08!625;CL:0002620!4.03e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002334;3.17e-10;12!CL:0000134;3.78e-10;55!CL:0000723;2.44e-09;61!CL:0000048;3.06e-09;58!CL:0002320;4.68e-09;188!CL:0000499;5.53e-09;28!CL:0000057;1.56e-08;73!CL:0000187;8.46e-08;55!CL:0000034;3.60e-07;69!CL:0002570;3.81e-07;8!CL:0000192;4.11e-07;43!CL:0000327;5.76e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.96e-21,76;CL:0000048,1.50e-16,427;CL:0000723,1.28e-15,433;CL:0000034,1.99e-14,441;CL:0000680,1.07e-13,58;CL:0000056,1.07e-13,58;CL:0000355,1.07e-13,58;CL:0000187,1.83e-13,55;CL:0000393,7.18e-11,61;CL:0000211,7.18e-11,61;CL:0002334,3.16e-10,12;CL:0000192,1.20e-09,43;CL:0000514,1.20e-09,43;CL:0002320,2.22e-09,361;CL:0000499,4.80e-09,28;CL:0000134,1.06e-07,354;CL:0002570,4.10e-07,8;CL:0000327,5.30e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000355;2.55e-07;58!CL:0000514;4.11e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.64e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.62e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.85e-15!83;UBERON:0002329!1.85e-15!83;UBERON:0003077!1.85e-15!83;UBERON:0003059!1.85e-15!83;UBERON:0007282!1.85e-15!83;UBERON:0009618!1.85e-15!83;UBERON:0007285!1.85e-15!83;UBERON:0002385!1.56e-14!63;UBERON:0001015!1.56e-14!63;UBERON:0000383!1.56e-14!63;UBERON:0001134!1.68e-14!61;UBERON:0002036!1.68e-14!61;UBERON:0003082!1.68e-14!61;UBERON:0004290!1.90e-13!70;UBERON:0005256!7.35e-13!143;UBERON:0000486!1.82e-11!82;UBERON:0002100!1.63e-08!216;UBERON:0001013!6.20e-08!14;UBERON:0000475!1.31e-07!365;UBERON:0003102!2.83e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;4.60e-09;198!UBERON:0001013;1.97e-08;14!UBERON:0004457;9.72e-07;9!UBERON:0000042;9.72e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,4.45e-14,62;UBERON:0002036,4.45e-14,62;UBERON:0003082,4.45e-14,62;UBERON:0002385,3.48e-13,64;UBERON:0001015,3.48e-13,64;UBERON:0000383,3.48e-13,64;UBERON:0007524,3.06e-12,73;UBERON:0002329,5.04e-12,71;UBERON:0003059,5.04e-12,71;UBERON:0007282,5.04e-12,71;UBERON:0004290,5.04e-12,71;UBERON:0009618,5.04e-12,71;UBERON:0007503,9.28e-12,78;UBERON:0003077,1.17e-11,72;UBERON:0007285,1.17e-11,72;UBERON:0003104,5.92e-10,160;UBERON:0009142,5.92e-10,160;UBERON:0000486,8.70e-10,83;UBERON:0005256,1.03e-09,122;UBERON:0002384,2.27e-09,371;UBERON:0001013,1.60e-08,14;UBERON:0000926,1.92e-07,315;UBERON:0004120,1.92e-07,315;UBERON:0006603,1.92e-07,315;UBERON:0002199,7.79e-07,46;UBERON:0002416,7.79e-07,46 | |||
|phase1_expression=15.6243406172679,19.4831476740795,26.4994279700426,6.00439790118782,14.7497161161005,1.74467704820074,63.3249695420776,3.79031924056099,1.56711376919903,0.737201809504527,0,0.873765488520689,5.53910654279752,2.97039247104112,1.98838425436749,1.34465029290355,1.20538905604795,0.730310090387373,0.975865597581014,1.47745269692145,3.4680117511523,3.76145665773705,0,0.410623275218653,0.87879847716362,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.68280343881454,6.26526553033299,4.69870898099936,8.52274448081012,22.4512104389277,22.2680065174308,11.1926020169606,0.661743720148475,3.54767035940102,3.68906099911129,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.8728219712034,18.3614241913641,4.50191214764944,49.6227353895448,19.5067610209096,3.92474320099615,3.20246987189115,40.4534779404142,2.17847724779836,2.15537075311501,0.817309515567294,6.81108424402191,3.45705554687999,0.234321431833797,0.936480230490962,0,2.09228152772521,0.469737994575059,0.485618833104395,0,1.02077085627447,1.35117749042945,2.27316718586684,58.2121400068206,50.9369874313827,0.910161361938026,11.4978902690598,0.336672227908132,1.7516592782075,0.277064115484183,5.26773145057006,13.1789752193578,17.5778528920718,2.49550802952046,7.5343646989322,15.1625746061183,8.05341224406335,7.50227740211006,3.19462840639161,5.15281080091258,6.88632368426882,8.77636927654584,5.16416127354353,3.28163906517349,6.53554280360325,6.46584227275248,9.58525899794859,3.82857973265033,1.18692414617341,0.193260853163297,0,0,0,0.132529768321485,0.116193942869518,0.414644220061482,0.252320850875628,0,0,10.935095949279,0,2.3218396401599,5.77503585335668,0,0,0,0.110293972732394,0,0,0,0,0,0,7.01208869017229,8.6430542379594,10.2906097969879,0,0,1.18157981336281,0,0,2.23038153388083,0,0,0,0.0925884451585296,0.651616610620649,0,0,0.34779121492523,3.40485213283883,0,0,0,0,0,0,0,0,0,0.503946384596579,0.283550194484773,0,0,1.15014803749563,0,0,0.621984346622316,0,0,0.063497894292169,0,0,1.71072446022705,0.616964956219941,0,0,0.784917590417525,3.48768055066624,2.71351657537515,7.36848779819333,32.1890801266694,11.834238535784,14.360658295583,6.24044621468197,1.28603687131071,1.41849132023278,2.66422179016099,23.0194569789618,27.1310802695722,4.93944202068461,4.56030658011229,11.3725423597615,3.16780749173372,1.80863626235752,0,2.39935178836937,0,0,0,12.4604924855623,11.4861935834114,2.85273810081437,2.75084482668401,3.08214483825575,0.537182889719687,0,0,0,0,1.52456774533478,0,0,0.167516265334349,0.637938751653163,0,0,0,6.74803204455269,5.00170521059677,1.08506009479894,38.6825802447301,42.1092413561302,25.2323864054295,8.55132329446806,13.2416283880196,29.562975527278,13.4514992680256,4.64957918974806,5.8998133933345,7.03757277191471,13.7060810223918,20.2454620048405,0,0,0,2.72814814301633,21.6366071363646,16.3290758398027,22.0815948958711,7.366174717827,42.3796742593941,28.3187519855099,5.11707249066703,36.3529861784553,8.90508398669946,4.78050050788232,27.3445056982216,6.15953670103569,4.67328986265259,5.34567740915813,0,0.601519410909855,0,10.21848588665,9.10455840033585,16.9150495297657,0,0.0770153371044148,0,0,0.211103257785751,0,0,0.215915916102139,4.62681758070868,2.70946437543853,6.02027728625824,0.254876273045038,0,0.671624264166535,0,0,0,0,0.325378394664303,1.23649213977267,3.29650073346036,1.32015199872941,4.01985876597321,3.25030123018261,25.7094287750655,6.76695028044854,0.308097234229289,1.07452572308291,1.37836572484531,6.01553371262332,3.91545073568417,1.44885266607372,30.2708921198907,0.826424576804891,0.576570202095319,0.127612712494584,0.10115778085555,3.71876439437829,32.7404840703866,0,4.00443654228915,0,0.869932992075073,3.89180860118232,0.143124886741991,2.60510858551767,3.48017367190598,7.62520775695299,4.60616024360401,4.2793898803392,2.22742273548156,2.35484592059769,3.77732160924961,7.41249980287348,5.06593330086452,1.2130948894399,0,0,6.82687234725426,4.87426979262569,0,7.23449530462324,33.2302765091225,5.65040583101214,2.2054613741845,0.66343897524122,1.75380354101505,5.78775534266688,4.59126326432643,2.02910376962704,1.239293992399,2.25356482025793,2.43799298746888,8.05642136307594,2.85336841185,1.06428319221179,19.8441177179804,7.57378253807774,0.75894634753143,1.39973888097993,0,0,0,1.60044461320525,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0.47748896947538,0,0,0,0,0,0,0,0.19924798825107,1.10513566212459,0,0,0,6.84287092855976,0,0,0,0.493217028184668,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0.120596438625408,0,0,0,0,0.10893846351899,0.139423744278603,10.6960859320278,0.455768223388005,0.23056390438806,0.179515288819544,0,0.319001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| |||
|short_description=p24@COL1A1 | |||
}} |
Revision as of 14:26, 11 September 2013
Short description: | p24@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_24_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -93bp_to_ENST00000510710_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.96e-21 | 76 |
multi fate stem cell | 1.50e-16 | 427 |
somatic stem cell | 1.28e-15 | 433 |
stem cell | 1.99e-14 | 441 |
muscle precursor cell | 1.07e-13 | 58 |
myoblast | 1.07e-13 | 58 |
multi-potent skeletal muscle stem cell | 1.07e-13 | 58 |
muscle cell | 1.83e-13 | 55 |
electrically responsive cell | 7.18e-11 | 61 |
electrically active cell | 7.18e-11 | 61 |
preadipocyte | 3.16e-10 | 12 |
smooth muscle cell | 1.20e-09 | 43 |
smooth muscle myoblast | 1.20e-09 | 43 |
connective tissue cell | 2.22e-09 | 361 |
stromal cell | 4.80e-09 | 28 |
mesenchymal cell | 1.06e-07 | 354 |
mesenchymal stem cell of adipose | 4.10e-07 | 8 |
extracellular matrix secreting cell | 5.30e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 4.45e-14 | 62 |
striated muscle tissue | 4.45e-14 | 62 |
myotome | 4.45e-14 | 62 |
muscle tissue | 3.48e-13 | 64 |
musculature | 3.48e-13 | 64 |
musculature of body | 3.48e-13 | 64 |
dense mesenchyme tissue | 3.06e-12 | 73 |
somite | 5.04e-12 | 71 |
presomitic mesoderm | 5.04e-12 | 71 |
presumptive segmental plate | 5.04e-12 | 71 |
dermomyotome | 5.04e-12 | 71 |
trunk paraxial mesoderm | 5.04e-12 | 71 |
epithelial vesicle | 9.28e-12 | 78 |
paraxial mesoderm | 1.17e-11 | 72 |
presumptive paraxial mesoderm | 1.17e-11 | 72 |
mesenchyme | 5.92e-10 | 160 |
entire embryonic mesenchyme | 5.92e-10 | 160 |
multilaminar epithelium | 8.70e-10 | 83 |
trunk mesenchyme | 1.03e-09 | 122 |
connective tissue | 2.27e-09 | 371 |
adipose tissue | 1.60e-08 | 14 |
mesoderm | 1.92e-07 | 315 |
mesoderm-derived structure | 1.92e-07 | 315 |
presumptive mesoderm | 1.92e-07 | 315 |
integument | 7.79e-07 | 46 |
integumental system | 7.79e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.62e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.