FFCP PHASE1:Hg19::chr17:38171681..38171699,+: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1440 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2438 | |||
|TSSclassifier=S | |||
|UniProt=P09919,Q8N4W3 | |||
|association_with_transcript=0bp_to_ENST00000225474,ENST00000331769,ENST00000479880,uc002hto.2,uc002htp.2,uc002htq.2,uc010wep.1_5end | |||
|coexpression_cluster_id=C1432 | |||
|description=CAGE_peak_1_at_CSF3_5end | |||
|id=chr17:38171681..38171699,+ | |||
|ontology_enrichment_celltype=CL:0000680!1.96e-13!57;CL:0000056!1.96e-13!57;CL:0000355!1.96e-13!57;CL:0000222!3.15e-13!119;CL:0000359!6.84e-13!32;CL:0000187!7.74e-12!54;CL:0000192!1.01e-11!42;CL:0000514!1.01e-11!42;CL:0000183!3.80e-10!59;CL:0000393!1.99e-09!60;CL:0000211!1.99e-09!60;CL:0000220!3.74e-09!246;CL:0002321!8.61e-09!248;CL:0002139!4.61e-08!24;CL:0002539!5.11e-08!10;CL:0000115!7.28e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.20e-15;32!CL:0000192;4.08e-10;43!CL:0002539;1.96e-09;10!CL:0000187;1.52e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.85e-16,32;CL:0000680,4.86e-15,58;CL:0000056,4.86e-15,58;CL:0000355,4.86e-15,58;CL:0000187,3.91e-13,55;CL:0000192,6.12e-13,43;CL:0000514,6.12e-13,43;CL:0000222,1.12e-12,121;CL:0000393,1.46e-10,61;CL:0000211,1.46e-10,61;CL:0002321,1.44e-09,250;CL:0002539,1.60e-09,10 | |||
|ontology_enrichment_development_v019=CL:0000514;4.08e-10;43!CL:0000355;3.65e-08;58 | |||
|ontology_enrichment_disease=DOID:2394!7.06e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.09e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.65e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000055!2.07e-21!69;UBERON:0001637!2.73e-19!42;UBERON:0003509!2.73e-19!42;UBERON:0004572!2.73e-19!42;UBERON:0001981!4.30e-19!60;UBERON:0007500!4.30e-19!60;UBERON:0004537!4.30e-19!60;UBERON:0006965!4.30e-19!60;UBERON:0000486!2.57e-18!82;UBERON:0002049!2.69e-18!79;UBERON:0007798!2.69e-18!79;UBERON:0000119!1.27e-17!312;UBERON:0004872!1.32e-17!84;UBERON:0000483!1.81e-17!309;UBERON:0004573!6.90e-17!33;UBERON:0004571!6.90e-17!33;UBERON:0004290!1.72e-16!70;UBERON:0000467!5.64e-16!625;UBERON:0000914!7.20e-16!83;UBERON:0002329!7.20e-16!83;UBERON:0003077!7.20e-16!83;UBERON:0003059!7.20e-16!83;UBERON:0007282!7.20e-16!83;UBERON:0009618!7.20e-16!83;UBERON:0007285!7.20e-16!83;UBERON:0000480!8.74e-16!626;UBERON:0000923!2.29e-14!604;UBERON:0005291!2.29e-14!604;UBERON:0006598!2.29e-14!604;UBERON:0002532!2.29e-14!604;UBERON:0000468!2.34e-14!659;UBERON:0002050!3.48e-14!605;UBERON:0005423!3.48e-14!605;UBERON:0004111!5.79e-14!241;UBERON:0000922!1.36e-13!612;UBERON:0001009!1.39e-13!113;UBERON:0002385!5.20e-13!63;UBERON:0001015!5.20e-13!63;UBERON:0000383!5.20e-13!63;UBERON:0001134!8.65e-13!61;UBERON:0002036!8.65e-13!61;UBERON:0003082!8.65e-13!61;UBERON:0004535!1.12e-12!110;UBERON:0000477!3.47e-11!286;UBERON:0000025!3.92e-11!194;UBERON:0000481!1.24e-10!347;UBERON:0000947!4.82e-09!21;UBERON:0010191!4.82e-09!21;UBERON:0000490!4.91e-09!138;UBERON:0003914!5.17e-09!118;UBERON:0000475!6.90e-09!365;UBERON:0001135!2.70e-08!15;UBERON:0004237!5.11e-08!10;UBERON:0004695!5.11e-08!10;UBERON:0002111!5.11e-08!10;UBERON:0004178!5.11e-08!10;UBERON:0007023!8.54e-08!115;UBERON:0000926!1.42e-07!448;UBERON:0004120!1.42e-07!448;UBERON:0006603!1.42e-07!448;UBERON:0005256!2.64e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.11e-17;33!UBERON:0004571;3.11e-17;33!UBERON:0001637;9.61e-15;42!UBERON:0003509;9.61e-15;42!UBERON:0004572;9.61e-15;42!UBERON:0000055;2.19e-11;65!UBERON:0007500;3.49e-10;56!UBERON:0001981;3.49e-10;56!UBERON:0004537;3.49e-10;56!UBERON:0002385;8.84e-10;31!UBERON:0001015;8.84e-10;31!UBERON:0000383;8.84e-10;31!UBERON:0000947;1.77e-09;21!UBERON:0010191;1.77e-09;21!UBERON:0004237;1.96e-09;10!UBERON:0004695;1.96e-09;10!UBERON:0002111;1.96e-09;10!UBERON:0004178;1.96e-09;10!UBERON:0002049;1.39e-08;75!UBERON:0007798;1.39e-08;75!UBERON:0001135;3.78e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,4.22e-23,68;UBERON:0001637,2.75e-21,42;UBERON:0003509,2.75e-21,42;UBERON:0004572,2.75e-21,42;UBERON:0007500,7.86e-21,59;UBERON:0001981,7.86e-21,59;UBERON:0004537,7.86e-21,59;UBERON:0006965,7.86e-21,59;UBERON:0002049,2.11e-19,78;UBERON:0007798,2.11e-19,78;UBERON:0004573,4.84e-19,33;UBERON:0004571,4.84e-19,33;UBERON:0000486,8.77e-19,83;UBERON:0002329,1.99e-18,71;UBERON:0003059,1.99e-18,71;UBERON:0007282,1.99e-18,71;UBERON:0004290,1.99e-18,71;UBERON:0009618,1.99e-18,71;UBERON:0004872,3.62e-18,83;UBERON:0003077,6.53e-18,72;UBERON:0007285,6.53e-18,72;UBERON:0007503,1.24e-17,78;UBERON:0007524,2.06e-17,73;UBERON:0001009,1.41e-15,112;UBERON:0004535,1.76e-14,109;UBERON:0001134,5.34e-14,62;UBERON:0002036,5.34e-14,62;UBERON:0003082,5.34e-14,62;UBERON:0002385,9.22e-14,64;UBERON:0001015,9.22e-14,64;UBERON:0000383,9.22e-14,64;UBERON:0000483,3.81e-13,306;UBERON:0000119,4.68e-13,309;UBERON:0002050,1.36e-12,564;UBERON:0000490,3.69e-12,148;UBERON:0000926,1.37e-11,315;UBERON:0004120,1.37e-11,315;UBERON:0006603,1.37e-11,315;UBERON:0000923,1.67e-11,560;UBERON:0010316,1.67e-11,560;UBERON:0005291,1.67e-11,560;UBERON:0006598,1.67e-11,560;UBERON:0010317,1.67e-11,560;UBERON:0002532,1.67e-11,560;UBERON:0000922,4.31e-11,592;UBERON:0005423,5.48e-11,581;UBERON:0003914,9.64e-11,117;UBERON:0004111,1.01e-10,240;UBERON:0005256,1.74e-10,122;UBERON:0000947,1.45e-09,21;UBERON:0010191,1.45e-09,21;UBERON:0004237,1.60e-09,10;UBERON:0004695,1.60e-09,10;UBERON:0002111,1.60e-09,10;UBERON:0004178,1.60e-09,10;UBERON:0000025,9.13e-09,192;UBERON:0003081,2.09e-08,203;UBERON:0001135,3.34e-08,15;UBERON:0003104,6.32e-07,160;UBERON:0009142,6.32e-07,160;UBERON:0002204,9.90e-07,167 | |||
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| |||
|short_description=p1@CSF3 | |||
}} |
Revision as of 13:21, 11 September 2013
Short description: | p1@CSF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CSF3_5end |
Coexpression cluster: | C1432_mesenchymal_Smooth_Lymphatic_Preadipocyte_Sebocyte_CD14_anaplastic |
Association with transcript: | 0bp_to_ENST00000225474, ENST00000331769, ENST00000479880, uc002hto.2, uc002htp.2, uc002htq.2, uc010wep.1_5end |
EntrezGene: | CSF3 |
HGNC: | 2438 |
UniProt: | P09919Q8N4W3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.85e-16 | 32 |
muscle precursor cell | 4.86e-15 | 58 |
myoblast | 4.86e-15 | 58 |
multi-potent skeletal muscle stem cell | 4.86e-15 | 58 |
muscle cell | 3.91e-13 | 55 |
smooth muscle cell | 6.12e-13 | 43 |
smooth muscle myoblast | 6.12e-13 | 43 |
mesodermal cell | 1.12e-12 | 121 |
electrically responsive cell | 1.46e-10 | 61 |
electrically active cell | 1.46e-10 | 61 |
embryonic cell | 1.44e-09 | 250 |
aortic smooth muscle cell | 1.60e-09 | 10 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.65e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.