FFCP PHASE1:Hg19::chr16:55539371..55539383,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C351|description=CAGE_peak_at_chr16:55539371..55539383,+|id=chr16:55539371..55539383,+|ontology_enrichment_celltype=CL:0000055!1.31e-31!180;CL:0000057!5.39e-23!75;CL:0000048!2.08e-10!430;CL:0002620!5.26e-10!23;CL:0000723!5.34e-10!436;CL:0002334!1.85e-09!12;CL:0000680!4.24e-09!57;CL:0000056!4.24e-09!57;CL:0000355!4.24e-09!57;CL:0000034!4.27e-09!444;CL:0000187!7.29e-08!54;CL:0002371!7.40e-08!591;CL:0000183!8.67e-08!59;CL:0000192!1.35e-07!42;CL:0000514!1.35e-07!42;CL:0000393!2.57e-07!60;CL:0000211!2.57e-07!60|ontology_enrichment_celltype_v019=CL:0002334;8.25e-17;12!CL:1000306;3.54e-09;4!CL:0002547;3.54e-09;4!CL:0002539;8.71e-08;10!CL:0002580;1.10e-07;3!CL:0002579;2.03e-07;3!CL:0002615;2.97e-07;3!CL:0000057;3.34e-07;73!CL:0002620;3.74e-07;23|ontology_enrichment_celltype_v019_2=CL:0000057,1.61e-20,76;CL:0002334,4.36e-17,12;CL:0000048,3.80e-13,427;CL:0000723,1.07e-12,433;CL:0000034,4.03e-12,441;CL:0002320,1.96e-11,361;CL:0000134,9.10e-11,354;CL:1000306,1.50e-09,4;CL:0002547,1.50e-09,4;CL:0000219,1.93e-08,386;CL:0000136,2.97e-08,15;CL:0002539,6.08e-08,10;CL:0002580,8.57e-08,3;CL:0002579,1.75e-07,3;CL:0002615,3.75e-07,3;CL:0002620,5.59e-07,23|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!3.29e-09!14|ontology_enrichment_disease_v019=DOID:2394;4.29e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,2.84e-07,14|ontology_enrichment_uberon=UBERON:0003102!1.25e-09!95;UBERON:0002199!1.86e-09!45;UBERON:0002416!1.86e-09!45;UBERON:0004872!2.16e-09!84;UBERON:0000486!1.46e-08!82;UBERON:0004290!1.63e-08!70;UBERON:0001637!2.02e-08!42;UBERON:0003509!2.02e-08!42;UBERON:0004572!2.02e-08!42;UBERON:0001134!2.16e-08!61;UBERON:0002036!2.16e-08!61;UBERON:0003082!2.16e-08!61;UBERON:0002385!2.80e-08!63;UBERON:0001015!2.80e-08!63;UBERON:0000383!2.80e-08!63;UBERON:0000914!3.54e-08!83;UBERON:0002329!3.54e-08!83;UBERON:0003077!3.54e-08!83;UBERON:0003059!3.54e-08!83;UBERON:0007282!3.54e-08!83;UBERON:0009618!3.54e-08!83;UBERON:0007285!3.54e-08!83;UBERON:0004573!3.60e-08!33;UBERON:0004571!3.60e-08!33;UBERON:0004457!5.22e-08!12;UBERON:0000042!5.22e-08!12;UBERON:0002097!1.54e-07!40|ontology_enrichment_uberon_v019=UBERON:0004457;2.98e-15;9!UBERON:0000042;2.98e-15;9!UBERON:0003688;5.13e-13;6!UBERON:0002358;5.13e-13;6!UBERON:0003684;5.13e-13;6!UBERON:0001178;5.13e-13;6!UBERON:0004573;1.93e-09;33!UBERON:0004571;1.93e-09;33!UBERON:0004797;3.54e-09;4!UBERON:0000415;3.54e-09;4!UBERON:0007240;3.54e-09;4!UBERON:0005742;3.54e-09;4!UBERON:0005734;3.54e-09;4!UBERON:0004664;3.54e-09;4!UBERON:0004663;3.54e-09;4!UBERON:0000947;8.32e-09;21!UBERON:0010191;8.32e-09;21!UBERON:0004237;8.71e-08;10!UBERON:0004695;8.71e-08;10!UBERON:0002111;8.71e-08;10!UBERON:0004178;8.71e-08;10!UBERON:0000310;8.76e-08;10!UBERON:0001443;5.35e-07;11!UBERON:0002384;7.58e-07;198|ontology_enrichment_uberon_v019_2=UBERON:0003688,5.63e-13,6;UBERON:0002358,5.63e-13,6;UBERON:0003684,5.63e-13,6;UBERON:0001178,5.63e-13,6;UBERON:0002384,2.71e-11,371;UBERON:0004457,5.55e-11,12;UBERON:0000042,5.55e-11,12;UBERON:0004573,5.10e-10,33;UBERON:0004571,5.10e-10,33;UBERON:0000415,1.50e-09,4;UBERON:0007240,1.50e-09,4;UBERON:0005742,1.50e-09,4;UBERON:0005734,1.50e-09,4;UBERON:0004664,1.50e-09,4;UBERON:0004663,1.50e-09,4;UBERON:0000947,4.39e-09,21;UBERON:0010191,4.39e-09,21;UBERON:0001637,3.05e-08,42;UBERON:0003509,3.05e-08,42;UBERON:0004572,3.05e-08,42;UBERON:0000310,5.78e-08,10;UBERON:0004237,6.08e-08,10;UBERON:0004695,6.08e-08,10;UBERON:0002111,6.08e-08,10;UBERON:0004178,6.08e-08,10;UBERON:0001443,3.69e-07,11;UBERON:0004872,5.91e-07,83;UBERON:0003102,7.00e-07,99;UBERON:0002199,7.93e-07,46;UBERON:0002416,7.93e-07,46|phase1_expression=2.90685406832891,7.70761886007539,2.39622486963151,1.0007329835313,2.68176656656373,0,0,0.631719873426831,4.44015567939725,0,0,0,0,0,0,3.36162573225888,4.82155622419182,1.46062018077475,2.43966399395253,0.61560529038394,0.408001382488506,0,0.572471974262113,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,1.30361867064741,2.3858578411533,0.486634870302636,0.0945348171640679,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,1.10047216776027,0,0,0,0,0,0,1.46437234528902,0,0.81014194788176,0.0892997282840798,0,0,0,0,0.732806975721629,0,0,0,1.49091585508596,1.51956613997496,1.45650098894541,7.74458876021797,2.83734705758686,0.560677600142307,1.06748995729705,2.4666754841716,0,0.404132016209064,0.163461903113459,0.151357427644931,0,0,1.24864030732128,0,0.448346041655403,0,0,0.140450806702248,0.204154171254893,0.122834317311768,0.309977343527296,3.56400857184616,2.47266929278557,0,0.718618141816238,0,0.125118519871964,0.27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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C351 | |||
|description=CAGE_peak_at_chr16:55539371..55539383,+ | |||
|id=chr16:55539371..55539383,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.31e-31!180;CL:0000057!5.39e-23!75;CL:0000048!2.08e-10!430;CL:0002620!5.26e-10!23;CL:0000723!5.34e-10!436;CL:0002334!1.85e-09!12;CL:0000680!4.24e-09!57;CL:0000056!4.24e-09!57;CL:0000355!4.24e-09!57;CL:0000034!4.27e-09!444;CL:0000187!7.29e-08!54;CL:0002371!7.40e-08!591;CL:0000183!8.67e-08!59;CL:0000192!1.35e-07!42;CL:0000514!1.35e-07!42;CL:0000393!2.57e-07!60;CL:0000211!2.57e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0002334;8.25e-17;12!CL:1000306;3.54e-09;4!CL:0002547;3.54e-09;4!CL:0002539;8.71e-08;10!CL:0002580;1.10e-07;3!CL:0002579;2.03e-07;3!CL:0002615;2.97e-07;3!CL:0000057;3.34e-07;73!CL:0002620;3.74e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.61e-20,76;CL:0002334,4.36e-17,12;CL:0000048,3.80e-13,427;CL:0000723,1.07e-12,433;CL:0000034,4.03e-12,441;CL:0002320,1.96e-11,361;CL:0000134,9.10e-11,354;CL:1000306,1.50e-09,4;CL:0002547,1.50e-09,4;CL:0000219,1.93e-08,386;CL:0000136,2.97e-08,15;CL:0002539,6.08e-08,10;CL:0002580,8.57e-08,3;CL:0002579,1.75e-07,3;CL:0002615,3.75e-07,3;CL:0002620,5.59e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.29e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.29e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.84e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0003102!1.25e-09!95;UBERON:0002199!1.86e-09!45;UBERON:0002416!1.86e-09!45;UBERON:0004872!2.16e-09!84;UBERON:0000486!1.46e-08!82;UBERON:0004290!1.63e-08!70;UBERON:0001637!2.02e-08!42;UBERON:0003509!2.02e-08!42;UBERON:0004572!2.02e-08!42;UBERON:0001134!2.16e-08!61;UBERON:0002036!2.16e-08!61;UBERON:0003082!2.16e-08!61;UBERON:0002385!2.80e-08!63;UBERON:0001015!2.80e-08!63;UBERON:0000383!2.80e-08!63;UBERON:0000914!3.54e-08!83;UBERON:0002329!3.54e-08!83;UBERON:0003077!3.54e-08!83;UBERON:0003059!3.54e-08!83;UBERON:0007282!3.54e-08!83;UBERON:0009618!3.54e-08!83;UBERON:0007285!3.54e-08!83;UBERON:0004573!3.60e-08!33;UBERON:0004571!3.60e-08!33;UBERON:0004457!5.22e-08!12;UBERON:0000042!5.22e-08!12;UBERON:0002097!1.54e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.98e-15;9!UBERON:0000042;2.98e-15;9!UBERON:0003688;5.13e-13;6!UBERON:0002358;5.13e-13;6!UBERON:0003684;5.13e-13;6!UBERON:0001178;5.13e-13;6!UBERON:0004573;1.93e-09;33!UBERON:0004571;1.93e-09;33!UBERON:0004797;3.54e-09;4!UBERON:0000415;3.54e-09;4!UBERON:0007240;3.54e-09;4!UBERON:0005742;3.54e-09;4!UBERON:0005734;3.54e-09;4!UBERON:0004664;3.54e-09;4!UBERON:0004663;3.54e-09;4!UBERON:0000947;8.32e-09;21!UBERON:0010191;8.32e-09;21!UBERON:0004237;8.71e-08;10!UBERON:0004695;8.71e-08;10!UBERON:0002111;8.71e-08;10!UBERON:0004178;8.71e-08;10!UBERON:0000310;8.76e-08;10!UBERON:0001443;5.35e-07;11!UBERON:0002384;7.58e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,5.63e-13,6;UBERON:0002358,5.63e-13,6;UBERON:0003684,5.63e-13,6;UBERON:0001178,5.63e-13,6;UBERON:0002384,2.71e-11,371;UBERON:0004457,5.55e-11,12;UBERON:0000042,5.55e-11,12;UBERON:0004573,5.10e-10,33;UBERON:0004571,5.10e-10,33;UBERON:0000415,1.50e-09,4;UBERON:0007240,1.50e-09,4;UBERON:0005742,1.50e-09,4;UBERON:0005734,1.50e-09,4;UBERON:0004664,1.50e-09,4;UBERON:0004663,1.50e-09,4;UBERON:0000947,4.39e-09,21;UBERON:0010191,4.39e-09,21;UBERON:0001637,3.05e-08,42;UBERON:0003509,3.05e-08,42;UBERON:0004572,3.05e-08,42;UBERON:0000310,5.78e-08,10;UBERON:0004237,6.08e-08,10;UBERON:0004695,6.08e-08,10;UBERON:0002111,6.08e-08,10;UBERON:0004178,6.08e-08,10;UBERON:0001443,3.69e-07,11;UBERON:0004872,5.91e-07,83;UBERON:0003102,7.00e-07,99;UBERON:0002199,7.93e-07,46;UBERON:0002416,7.93e-07,46 | |||
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| |||
|short_description=p@chr16:55539371..55539383,+ | |||
}} |
Revision as of 10:45, 11 September 2013
Short description: | p@chr16:55539371..55539383, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr16:55539371..55539383, + |
Coexpression cluster: | C351_Fibroblast_Smooth_mesenchymal_Adipocyte_tenocyte_Synoviocyte_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.61e-20 | 76 |
preadipocyte | 4.36e-17 | 12 |
multi fate stem cell | 3.80e-13 | 427 |
somatic stem cell | 1.07e-12 | 433 |
stem cell | 4.03e-12 | 441 |
connective tissue cell | 1.96e-11 | 361 |
mesenchymal cell | 9.10e-11 | 354 |
fibroblast of tunica adventitia of artery | 1.50e-09 | 4 |
fibroblast of the aortic adventitia | 1.50e-09 | 4 |
motile cell | 1.93e-08 | 386 |
fat cell | 2.97e-08 | 15 |
aortic smooth muscle cell | 6.08e-08 | 10 |
preadipocyte of the breast | 8.57e-08 | 3 |
omentum preadipocyte | 1.75e-07 | 3 |
adipocyte of omentum tissue | 3.75e-07 | 3 |
skin fibroblast | 5.59e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
omentum | 5.63e-13 | 6 |
peritoneum | 5.63e-13 | 6 |
abdominal cavity | 5.63e-13 | 6 |
visceral peritoneum | 5.63e-13 | 6 |
connective tissue | 2.71e-11 | 371 |
cavity lining | 5.55e-11 | 12 |
serous membrane | 5.55e-11 | 12 |
systemic artery | 5.10e-10 | 33 |
systemic arterial system | 5.10e-10 | 33 |
artery wall | 1.50e-09 | 4 |
tunica adventitia of artery | 1.50e-09 | 4 |
adventitia | 1.50e-09 | 4 |
tunica adventitia of blood vessel | 1.50e-09 | 4 |
aorta tunica adventitia | 1.50e-09 | 4 |
aorta wall | 1.50e-09 | 4 |
aorta | 4.39e-09 | 21 |
aortic system | 4.39e-09 | 21 |
artery | 3.05e-08 | 42 |
arterial blood vessel | 3.05e-08 | 42 |
arterial system | 3.05e-08 | 42 |
breast | 5.78e-08 | 10 |
blood vessel smooth muscle | 6.08e-08 | 10 |
arterial system smooth muscle | 6.08e-08 | 10 |
artery smooth muscle tissue | 6.08e-08 | 10 |
aorta smooth muscle tissue | 6.08e-08 | 10 |
chest | 3.69e-07 | 11 |
splanchnic layer of lateral plate mesoderm | 5.91e-07 | 83 |
surface structure | 7.00e-07 | 99 |
integument | 7.93e-07 | 46 |
integumental system | 7.93e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.84e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.