FFCP PHASE1:Hg19::chr14:99947715..99947791,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8812|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1596|TSSclassifier=S|UniProt=C9JSW4,A8MZK4,O75909,C9JI13,G3V5E1,G3V235,G3V2Q3|association_with_transcript=0bp_to_ENST00000216279,ENST00000380246,ENST00000389879,ENST00000437596,ENST00000553636,ENST00000555049,ENST00000555842,ENST00000556641,ENST00000557441,NM_001099402,uc001ygg.3,uc001ygi.3_5end|coexpression_cluster_id=C17|description=CAGE_peak_1_at_CCNK_5end|id=chr14:99947715..99947791,+|ontology_enrichment_celltype=CL:0000003!1.58e-24!722;CL:0000012!1.17e-19!682;CL:0000548!2.13e-19!679;CL:0000004!2.13e-19!679;CL:0000255!2.13e-19!679;CL:0002057!2.28e-18!42;CL:0000144!4.31e-17!625;CL:0000063!4.83e-17!578;CL:0000860!6.85e-17!45;CL:0002371!3.13e-16!591;CL:0000738!7.43e-16!140;CL:0000988!1.10e-15!182;CL:0000037!2.22e-15!172;CL:0000566!2.22e-15!172;CL:0002032!5.31e-15!165;CL:0000837!5.31e-15!165;CL:0000763!9.97e-15!112;CL:0000049!9.97e-15!112;CL:0000766!9.88e-14!76;CL:0002031!5.11e-11!124;CL:0000034!1.35e-10!444;CL:0000839!1.98e-10!70;CL:0002087!3.00e-10!119;CL:0002009!3.85e-10!65;CL:0000557!4.55e-10!71;CL:0000723!6.37e-10!436;CL:0000134!1.25e-09!358;CL:0000048!2.13e-09!430;CL:0002194!2.41e-09!63;CL:0000576!2.41e-09!63;CL:0000040!2.41e-09!63;CL:0000559!2.41e-09!63;CL:0002320!6.42e-09!365;CL:0000219!2.44e-07!390|ontology_enrichment_celltype_v019=CL:0000860;5.04e-17;33!CL:0002057;5.04e-17;33!CL:0000473;1.56e-10;39!CL:0000234;1.56e-10;39!CL:0000576;2.53e-10;48!CL:0000766;4.59e-08;69|ontology_enrichment_celltype_v019_2=CL:0000860,2.28e-18,42;CL:0002057,2.28e-18,42;CL:0000738,9.86e-17,136;CL:0000988,2.17e-16,177;CL:0000037,4.09e-16,168;CL:0002032,9.57e-16,161;CL:0000837,9.57e-16,161;CL:0000763,1.04e-15,108;CL:0000049,1.04e-15,108;CL:0000766,5.38e-15,72;CL:0000473,5.47e-14,48;CL:0000234,5.47e-14,48;CL:0002031,9.59e-12,120;CL:0000839,1.67e-11,66;CL:0002009,2.96e-11,61;CL:0000557,4.22e-11,67;CL:0002087,5.87e-11,115;CL:0000034,1.71e-10,441;CL:0002194,2.07e-10,59;CL:0000576,2.07e-10,59;CL:0000040,2.07e-10,59;CL:0000559,2.07e-10,59;CL:0000723,7.98e-10,433;CL:0000134,9.33e-10,354;CL:0000048,2.64e-09,427;CL:0002320,4.91e-09,361;CL:0000219,1.96e-07,386|ontology_enrichment_development_v019=CL:0002057;1.17e-13;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.50e-11!102;UBERON:0003061!1.50e-11!102;UBERON:0002193!8.15e-11!112;UBERON:0002371!1.22e-09!80;UBERON:0003081!1.83e-08!216;UBERON:0002384!2.03e-08!375;UBERON:0001474!2.04e-08!86|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.02e-12,98;UBERON:0003061,2.02e-12,98;UBERON:0002193,1.38e-11,108;UBERON:0002371,1.51e-10,76;UBERON:0002405,4.36e-10,93;UBERON:0001474,3.48e-09,82;UBERON:0003081,5.13e-09,203;UBERON:0002384,1.58e-08,371;UBERON:0004765,1.50e-07,90|phase1_expression=46.8730218518036,50.741824162163,65.5437979046266,38.0278533741896,36.2038486486103,56.702004066524,40.5279805069297,63.1719873426831,46.7522274477711,88.9556850135462,100.48336818803,104.633417250353,74.9098218168808,52.1056345961796,37.1165060815266,67.9048397916293,71.7206488348533,57.6944971406025,57.5760702572798,80.5211719822193,62.8322129032299,80.2444086983905,46.0839939281001,46.4004300997077,44.4420944165602,139.454465490011,140.063605601607,145.772366992934,213.990166605804,176.561523124718,108.835734691201,49.6487461218621,90.9641874710315,158.254716351385,71.657160536779,63.40747768939,38.1680571135301,131.296911822055,185.503613909881,133.678696360965,47.0222495903841,51.4990928970177,45.3332999036168,100.17938651912,131.122952460017,113.044172513522,150.381586877978,144.319928695661,176.532631410209,170.601588647035,153.184102504402,158.916058485129,169.614874922416,203.973160012489,232.933556942268,136.099211489303,150.098382531815,111.462848284762,147.226352230404,191.594629164428,184.768429355923,132.270371374873,139.824023992764,113.375783641697,210.691907244352,171.350337856724,234.181165622336,155.522923793924,149.665597586598,152.032191293582,193.122441340045,226.122468496365,212.029799585393,79.854498225914,82.0652597865068,61.6396417794625,77.9560700156676,84.0990599912435,153.171484122317,55.007459542061,82.5504210376224,66.4897519703268,38.719173781491,32.7683166757279,32.9118423929515,31.151306247355,51.2506863406096,38.5084134769504,30.4080641481037,40.0702576904853,84.8127323973078,105.115456897398,120.416066859447,77.9810838616253,112.662221159289,33.9765469359849,152.056652297993,139.125810013204,125.005711391702,73.0604984857263,73.3325099925578,68.1764840258016,58.4480185223734,81.8866858106026,69.8216000715364,65.7955666913355,107.509133914711,63.4052032642092,59.0469437921847,63.8019069862263,48.6376031303093,98.2432460641828,92.6791019762878,81.0648709111831,93.0366161864293,72.9712166972326,74.3447757587727,65.6328420871823,117.907176481088,48.1033775629386,37.1117568698159,27.5631092890028,58.1219959640203,70.5206227460845,5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35998468,51.4622450912858,53.9447365174533,57.7578622635263,63.934716266091,100.669271774477,55.2595804938342,71.382414962136,67.1340853182784,48.9933077893911,44.3297827157148,40.4153499825502,86.9039474667313,55.441632896844,203.044441810643,126.354463138008,106.481071660555,31.778155338102,86.7578367900629,55.7864005666775,71.9954625077748,73.4039100295689,106.945502369367,43.1312124710795,37.5576138513755,55.2524055491806,66.5622668235281,54.355107804052,34.6117644583349,35.8566347431444,63.4507997895601,57.5393276544145,58.0329531877594,45.4844254830538,50.2780426175919,48.0186569486662,96.6844993715366,20.8148394554222,44.7898448487169,61.8615864253464,53.5029445053508,38.2580756079079,56.3507522471744,31.9981528215578,27.4758148881673,44.6064278394205,33.4254586457932,29.9815782544224,69.9793232912313,83.9944430235911,82.1760121377122,94.0378922463753,57.5886964155422,57.2998738629884,80.1632375128587,67.9901368277286,84.9178339241819,26.5714763819251,68.6195539541327,66.1638546740791,90.9314930234828,44.2371179250485,44.5214516209893,58.0789898168327,41.0934450056516,42.6640351034211,69.080478624005,43.6665836982579,68.2380428115328,76.6574565837572,44.4632523778978,66.2478932771083,78.9055285507621,82.4137132691697,55.0841718709987,126.181216373578,41.1571222649804,47.3749038848517,45.3832137583659,69.8525599624252,53.8359985157615,42.6217494178291,50.5912199529526,63.9020532355439,28.3079203357944,52.9022598485622,46.3419137250439,64.2574132148141,60.8352405170997,53.819779945442,99.4469317570754,29.6633204950194,107.545189200616,97.3095319435515,40.7843200470314,68.8363774112444,93.9556085800689,120.491754329449,47.4193496213841,78.5836559106092,58.0085941192278,62.1100310335331,66.6658373514842,81.9554450687279,81.0754201132092,47.2623051147163,69.1947318211105,55.6710927042336,47.1139663267365,29.9442513231495,54.1146108438922,53.2762006683507,60.4261538908436,114.00831586501,55.8562521196692,61.8165006444637,48.0831033108706,39.9769701907294,47.0684777767499,23.0963016159593,42.7952458310581,69.2118112762111,41.4202613031732,68.650554333878,63.8150803083206,69.9368084513312,148.512557704444,75.3497620915875,81.1658204946091,159.359354244688,43.0898469065445,45.8729283404541,55.7590978459146,66.1062845589444,45.1463494867674,42.762367653357,46.5543619653552,64.355138142848,30.5035914896736,62.2982249458256,70.7793643324793,72.1152774960391,95.6573682636349,60.1734095477692,101.542614000913,106.78187325949,167.974051325891,88.7368556135583,139.877275941525,44.7751497307741,66.5074163391986,52.0290915838393,32.3767626790687,83.8364049671359,94.6639393011833,48.3288327722444,46.0805425933914,30.9239299106076,59.6543889237674,30.45876379659,81.4286320946363,56.3019312332509,33.2660356546013,103.54495767316,67.2382279029607,30.8915651659104,51.2901904028611,32.8497319364836,61.365204979799,37.4344484050479,31.2905683867191,58.1681263478066,82.0655340296276|short_description=p1@CCNK}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=8812 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1596 | |||
|TSSclassifier=S | |||
|UniProt=C9JSW4,A8MZK4,O75909,C9JI13,G3V5E1,G3V235,G3V2Q3 | |||
|association_with_transcript=0bp_to_ENST00000216279,ENST00000380246,ENST00000389879,ENST00000437596,ENST00000553636,ENST00000555049,ENST00000555842,ENST00000556641,ENST00000557441,NM_001099402,uc001ygg.3,uc001ygi.3_5end | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_1_at_CCNK_5end | |||
|id=chr14:99947715..99947791,+ | |||
|ontology_enrichment_celltype=CL:0000003!1.58e-24!722;CL:0000012!1.17e-19!682;CL:0000548!2.13e-19!679;CL:0000004!2.13e-19!679;CL:0000255!2.13e-19!679;CL:0002057!2.28e-18!42;CL:0000144!4.31e-17!625;CL:0000063!4.83e-17!578;CL:0000860!6.85e-17!45;CL:0002371!3.13e-16!591;CL:0000738!7.43e-16!140;CL:0000988!1.10e-15!182;CL:0000037!2.22e-15!172;CL:0000566!2.22e-15!172;CL:0002032!5.31e-15!165;CL:0000837!5.31e-15!165;CL:0000763!9.97e-15!112;CL:0000049!9.97e-15!112;CL:0000766!9.88e-14!76;CL:0002031!5.11e-11!124;CL:0000034!1.35e-10!444;CL:0000839!1.98e-10!70;CL:0002087!3.00e-10!119;CL:0002009!3.85e-10!65;CL:0000557!4.55e-10!71;CL:0000723!6.37e-10!436;CL:0000134!1.25e-09!358;CL:0000048!2.13e-09!430;CL:0002194!2.41e-09!63;CL:0000576!2.41e-09!63;CL:0000040!2.41e-09!63;CL:0000559!2.41e-09!63;CL:0002320!6.42e-09!365;CL:0000219!2.44e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.04e-17;33!CL:0002057;5.04e-17;33!CL:0000473;1.56e-10;39!CL:0000234;1.56e-10;39!CL:0000576;2.53e-10;48!CL:0000766;4.59e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.28e-18,42;CL:0002057,2.28e-18,42;CL:0000738,9.86e-17,136;CL:0000988,2.17e-16,177;CL:0000037,4.09e-16,168;CL:0002032,9.57e-16,161;CL:0000837,9.57e-16,161;CL:0000763,1.04e-15,108;CL:0000049,1.04e-15,108;CL:0000766,5.38e-15,72;CL:0000473,5.47e-14,48;CL:0000234,5.47e-14,48;CL:0002031,9.59e-12,120;CL:0000839,1.67e-11,66;CL:0002009,2.96e-11,61;CL:0000557,4.22e-11,67;CL:0002087,5.87e-11,115;CL:0000034,1.71e-10,441;CL:0002194,2.07e-10,59;CL:0000576,2.07e-10,59;CL:0000040,2.07e-10,59;CL:0000559,2.07e-10,59;CL:0000723,7.98e-10,433;CL:0000134,9.33e-10,354;CL:0000048,2.64e-09,427;CL:0002320,4.91e-09,361;CL:0000219,1.96e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.17e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.50e-11!102;UBERON:0003061!1.50e-11!102;UBERON:0002193!8.15e-11!112;UBERON:0002371!1.22e-09!80;UBERON:0003081!1.83e-08!216;UBERON:0002384!2.03e-08!375;UBERON:0001474!2.04e-08!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.02e-12,98;UBERON:0003061,2.02e-12,98;UBERON:0002193,1.38e-11,108;UBERON:0002371,1.51e-10,76;UBERON:0002405,4.36e-10,93;UBERON:0001474,3.48e-09,82;UBERON:0003081,5.13e-09,203;UBERON:0002384,1.58e-08,371;UBERON:0004765,1.50e-07,90 | |||
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| |||
|short_description=p1@CCNK | |||
}} |
Revision as of 06:17, 11 September 2013
Short description: | p1@CCNK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CCNK_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 0bp_to_ENST00000216279, ENST00000380246, ENST00000389879, ENST00000437596, ENST00000553636, ENST00000555049, ENST00000555842, ENST00000556641, ENST00000557441, NM_001099402, uc001ygg.3, uc001ygi.3_5end |
EntrezGene: | CCNK |
HGNC: | 1596 |
UniProt: | C9JSW4A8MZK4O75909C9JI13G3V5E1G3V235G3V2Q3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.28e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.28e-18 | 42 |
leukocyte | 9.86e-17 | 136 |
hematopoietic cell | 2.17e-16 | 177 |
hematopoietic stem cell | 4.09e-16 | 168 |
hematopoietic oligopotent progenitor cell | 9.57e-16 | 161 |
hematopoietic multipotent progenitor cell | 9.57e-16 | 161 |
myeloid cell | 1.04e-15 | 108 |
common myeloid progenitor | 1.04e-15 | 108 |
myeloid leukocyte | 5.38e-15 | 72 |
defensive cell | 5.47e-14 | 48 |
phagocyte | 5.47e-14 | 48 |
hematopoietic lineage restricted progenitor cell | 9.59e-12 | 120 |
myeloid lineage restricted progenitor cell | 1.67e-11 | 66 |
macrophage dendritic cell progenitor | 2.96e-11 | 61 |
granulocyte monocyte progenitor cell | 4.22e-11 | 67 |
nongranular leukocyte | 5.87e-11 | 115 |
stem cell | 1.71e-10 | 441 |
monopoietic cell | 2.07e-10 | 59 |
monocyte | 2.07e-10 | 59 |
monoblast | 2.07e-10 | 59 |
promonocyte | 2.07e-10 | 59 |
somatic stem cell | 7.98e-10 | 433 |
mesenchymal cell | 9.33e-10 | 354 |
multi fate stem cell | 2.64e-09 | 427 |
connective tissue cell | 4.91e-09 | 361 |
motile cell | 1.96e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.02e-12 | 98 |
blood island | 2.02e-12 | 98 |
hemolymphoid system | 1.38e-11 | 108 |
bone marrow | 1.51e-10 | 76 |
immune system | 4.36e-10 | 93 |
bone element | 3.48e-09 | 82 |
lateral plate mesoderm | 5.13e-09 | 203 |
connective tissue | 1.58e-08 | 371 |
skeletal element | 1.50e-07 | 90 |
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