FFCP PHASE1:Hg19::chr14:54421190..54421212,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=652|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1071|TSSclassifier=S|UniProt=P12644,Q53XC5|association_with_transcript=57bp_to_ENST00000417573,NM_130851,uc010aoh.2_5end|coexpression_cluster_id=C830|description=CAGE_peak_5_at_BMP4_5end|id=chr14:54421190..54421212,-|ontology_enrichment_celltype=CL:0000213!5.98e-23!57;CL:0000215!5.98e-23!57;CL:0000115!7.66e-19!35;CL:0000222!7.48e-18!119;CL:0002078!1.18e-17!44;CL:0002139!2.27e-17!24;CL:0000071!2.70e-12!18;CL:0002546!2.70e-12!18;CL:1000413!3.35e-09!9;CL:0002321!1.17e-07!248;CL:0000220!2.44e-07!246;CL:0000076!3.41e-07!62;CL:0005020!9.54e-07!6;CL:0002138!9.54e-07!6;CL:0005022!9.54e-07!6|ontology_enrichment_celltype_v019=CL:0002139;9.09e-45;24!CL:0000115;1.88e-40;36!CL:0000071;1.91e-31;18!CL:0002078;8.32e-26;45!CL:0000213;1.40e-21;58!CL:0000215;1.40e-21;58!CL:1000413;2.33e-21;9!CL:0002138;5.64e-15;6!CL:0002544;9.82e-15;6!CL:0002543;4.50e-10;6!CL:0002188;3.21e-08;5!CL:0002618;4.40e-08;3!CL:0000076;1.98e-07;63!CL:0002622;4.58e-07;3|ontology_enrichment_celltype_v019_2=CL:0000115,2.09e-46,36;CL:0002139,8.36e-45,24;CL:0002078,1.27e-40,45;CL:0000213,2.87e-38,58;CL:0000215,2.87e-38,58;CL:0000071,1.84e-31,18;CL:0002546,1.84e-31,18;CL:0000222,2.85e-23,121;CL:1000413,2.47e-21,9;CL:0005020,5.37e-15,6;CL:0002138,5.37e-15,6;CL:0005022,5.37e-15,6;CL:0002544,1.05e-14,6;CL:0000076,6.06e-12,63;CL:0002543,4.36e-10,6;CL:0002321,1.06e-09,250;CL:0002188,2.79e-08,5;CL:0002618,4.42e-08,3;CL:0000066,2.00e-07,253;CL:0002622,3.83e-07,3|ontology_enrichment_development_v019=CL:0002546;1.91e-31;18!CL:0005022;5.64e-15;6!CL:0000222;4.96e-09;121|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000477!7.92e-20!286;UBERON:0003914!5.28e-19!118;UBERON:0004111!7.61e-19!241;UBERON:0000025!9.12e-15!194;UBERON:0000055!1.11e-14!69;UBERON:0000490!1.29e-14!138;UBERON:0002049!1.94e-14!79;UBERON:0007798!1.94e-14!79;UBERON:0004872!2.72e-14!84;UBERON:0000119!5.03e-14!312;UBERON:0000483!5.94e-14!309;UBERON:0006914!1.99e-13!25;UBERON:0001009!4.53e-13!113;UBERON:0004535!7.43e-13!110;UBERON:0000487!2.35e-12!22;UBERON:0001986!2.70e-12!18;UBERON:0004638!2.70e-12!18;UBERON:0004852!2.70e-12!18;UBERON:0001981!2.71e-12!60;UBERON:0007500!2.71e-12!60;UBERON:0004537!2.71e-12!60;UBERON:0006965!2.71e-12!60;UBERON:0000481!6.30e-10!347;UBERON:0003915!3.35e-09!9;UBERON:0004700!3.35e-09!9;UBERON:0001917!3.35e-09!9;UBERON:0003929!5.45e-09!54;UBERON:0001007!6.10e-09!155;UBERON:0001555!6.10e-09!155;UBERON:0007026!6.10e-09!155;UBERON:0004921!7.46e-08!129;UBERON:0004185!7.46e-08!129;UBERON:0001048!1.85e-07!168;UBERON:0004119!2.78e-07!169;UBERON:0000925!2.78e-07!169;UBERON:0006595!2.78e-07!169;UBERON:0003104!4.43e-07!238;UBERON:0009142!4.43e-07!238;UBERON:0005911!4.72e-07!82;UBERON:0005256!6.07e-07!143;UBERON:0001637!7.25e-07!42;UBERON:0003509!7.25e-07!42;UBERON:0004572!7.25e-07!42|ontology_enrichment_uberon_v019=UBERON:0004638;1.91e-31;18!UBERON:0001986;1.91e-31;18!UBERON:0004852;1.91e-31;18!UBERON:0000487;7.81e-28;22!UBERON:0006914;8.04e-27;25!UBERON:0003915;2.33e-21;9!UBERON:0004700;2.33e-21;9!UBERON:0001917;2.33e-21;9!UBERON:0000490;2.24e-17;33!UBERON:0000055;8.91e-13;65!UBERON:0001473;5.58e-11;8!UBERON:0004536;5.58e-11;8!UBERON:0006558;5.58e-11;8!UBERON:0007500;9.56e-11;56!UBERON:0001981;9.56e-11;56!UBERON:0004537;9.56e-11;56!UBERON:0002049;3.25e-09;75!UBERON:0007798;3.25e-09;75!UBERON:0001638;7.17e-09;9!UBERON:0003920;7.17e-09;9!UBERON:0004582;7.17e-09;9!UBERON:0002465;1.39e-08;10!UBERON:0002066;1.07e-07;5!UBERON:0003914;1.46e-07;74!UBERON:0001280;5.49e-07;3!UBERON:0004647;5.49e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.84e-31,18;UBERON:0001986,1.84e-31,18;UBERON:0004852,1.84e-31,18;UBERON:0000487,6.16e-28,22;UBERON:0006914,7.05e-27,25;UBERON:0000055,1.10e-22,68;UBERON:0003915,2.47e-21,9;UBERON:0004700,2.47e-21,9;UBERON:0001917,2.47e-21,9;UBERON:0002049,1.26e-18,78;UBERON:0007798,1.26e-18,78;UBERON:0007500,6.85e-16,59;UBERON:0001981,6.85e-16,59;UBERON:0004537,6.85e-16,59;UBERON:0006965,6.85e-16,59;UBERON:0003914,6.37e-15,117;UBERON:0000490,1.11e-14,148;UBERON:0004535,7.13e-14,109;UBERON:0004872,1.28e-13,83;UBERON:0001009,2.95e-13,112;UBERON:0004111,2.66e-11,240;UBERON:0001473,5.39e-11,8;UBERON:0004536,5.39e-11,8;UBERON:0006558,5.39e-11,8;UBERON:0001638,8.29e-09,9;UBERON:0003920,8.29e-09,9;UBERON:0004582,8.29e-09,9;UBERON:0003064,9.40e-09,28;UBERON:0002465,1.35e-08,10;UBERON:0000058,5.04e-08,19;UBERON:0003929,5.51e-08,54;UBERON:0002066,1.33e-07,5;UBERON:0000483,2.67e-07,306;UBERON:0001280,3.83e-07,3;UBERON:0004647,3.83e-07,3;UBERON:0005171,3.83e-07,3;UBERON:0000119,4.13e-07,309|phase1_expression=0.54503513781167,0,0,0,0,0.872338524100369,0,0,0.261185628199839,0,0.697801167972428,0,0,0,0,0,0.602694528023977,0,0.975865597581014,0.369363174230364,2.04000691244253,0.313454721478088,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0.2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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=652 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1071 | |||
|TSSclassifier=S | |||
|UniProt=P12644,Q53XC5 | |||
|association_with_transcript=57bp_to_ENST00000417573,NM_130851,uc010aoh.2_5end | |||
|coexpression_cluster_id=C830 | |||
|description=CAGE_peak_5_at_BMP4_5end | |||
|id=chr14:54421190..54421212,- | |||
|ontology_enrichment_celltype=CL:0000213!5.98e-23!57;CL:0000215!5.98e-23!57;CL:0000115!7.66e-19!35;CL:0000222!7.48e-18!119;CL:0002078!1.18e-17!44;CL:0002139!2.27e-17!24;CL:0000071!2.70e-12!18;CL:0002546!2.70e-12!18;CL:1000413!3.35e-09!9;CL:0002321!1.17e-07!248;CL:0000220!2.44e-07!246;CL:0000076!3.41e-07!62;CL:0005020!9.54e-07!6;CL:0002138!9.54e-07!6;CL:0005022!9.54e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;9.09e-45;24!CL:0000115;1.88e-40;36!CL:0000071;1.91e-31;18!CL:0002078;8.32e-26;45!CL:0000213;1.40e-21;58!CL:0000215;1.40e-21;58!CL:1000413;2.33e-21;9!CL:0002138;5.64e-15;6!CL:0002544;9.82e-15;6!CL:0002543;4.50e-10;6!CL:0002188;3.21e-08;5!CL:0002618;4.40e-08;3!CL:0000076;1.98e-07;63!CL:0002622;4.58e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,2.09e-46,36;CL:0002139,8.36e-45,24;CL:0002078,1.27e-40,45;CL:0000213,2.87e-38,58;CL:0000215,2.87e-38,58;CL:0000071,1.84e-31,18;CL:0002546,1.84e-31,18;CL:0000222,2.85e-23,121;CL:1000413,2.47e-21,9;CL:0005020,5.37e-15,6;CL:0002138,5.37e-15,6;CL:0005022,5.37e-15,6;CL:0002544,1.05e-14,6;CL:0000076,6.06e-12,63;CL:0002543,4.36e-10,6;CL:0002321,1.06e-09,250;CL:0002188,2.79e-08,5;CL:0002618,4.42e-08,3;CL:0000066,2.00e-07,253;CL:0002622,3.83e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002546;1.91e-31;18!CL:0005022;5.64e-15;6!CL:0000222;4.96e-09;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0004638;1.91e-31;18!UBERON:0001986;1.91e-31;18!UBERON:0004852;1.91e-31;18!UBERON:0000487;7.81e-28;22!UBERON:0006914;8.04e-27;25!UBERON:0003915;2.33e-21;9!UBERON:0004700;2.33e-21;9!UBERON:0001917;2.33e-21;9!UBERON:0000490;2.24e-17;33!UBERON:0000055;8.91e-13;65!UBERON:0001473;5.58e-11;8!UBERON:0004536;5.58e-11;8!UBERON:0006558;5.58e-11;8!UBERON:0007500;9.56e-11;56!UBERON:0001981;9.56e-11;56!UBERON:0004537;9.56e-11;56!UBERON:0002049;3.25e-09;75!UBERON:0007798;3.25e-09;75!UBERON:0001638;7.17e-09;9!UBERON:0003920;7.17e-09;9!UBERON:0004582;7.17e-09;9!UBERON:0002465;1.39e-08;10!UBERON:0002066;1.07e-07;5!UBERON:0003914;1.46e-07;74!UBERON:0001280;5.49e-07;3!UBERON:0004647;5.49e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.84e-31,18;UBERON:0001986,1.84e-31,18;UBERON:0004852,1.84e-31,18;UBERON:0000487,6.16e-28,22;UBERON:0006914,7.05e-27,25;UBERON:0000055,1.10e-22,68;UBERON:0003915,2.47e-21,9;UBERON:0004700,2.47e-21,9;UBERON:0001917,2.47e-21,9;UBERON:0002049,1.26e-18,78;UBERON:0007798,1.26e-18,78;UBERON:0007500,6.85e-16,59;UBERON:0001981,6.85e-16,59;UBERON:0004537,6.85e-16,59;UBERON:0006965,6.85e-16,59;UBERON:0003914,6.37e-15,117;UBERON:0000490,1.11e-14,148;UBERON:0004535,7.13e-14,109;UBERON:0004872,1.28e-13,83;UBERON:0001009,2.95e-13,112;UBERON:0004111,2.66e-11,240;UBERON:0001473,5.39e-11,8;UBERON:0004536,5.39e-11,8;UBERON:0006558,5.39e-11,8;UBERON:0001638,8.29e-09,9;UBERON:0003920,8.29e-09,9;UBERON:0004582,8.29e-09,9;UBERON:0003064,9.40e-09,28;UBERON:0002465,1.35e-08,10;UBERON:0000058,5.04e-08,19;UBERON:0003929,5.51e-08,54;UBERON:0002066,1.33e-07,5;UBERON:0000483,2.67e-07,306;UBERON:0001280,3.83e-07,3;UBERON:0004647,3.83e-07,3;UBERON:0005171,3.83e-07,3;UBERON:0000119,4.13e-07,309 | |||
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| |||
|short_description=p5@BMP4 | |||
}} |
Revision as of 04:47, 11 September 2013
Short description: | p5@BMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_BMP4_5end |
Coexpression cluster: | C830_Renal_Endothelial_adipose_Mast_ovary_testis_Lymphatic |
Association with transcript: | 57bp_to_ENST00000417573, NM_130851, uc010aoh.2_5end |
EntrezGene: | BMP4 |
HGNC: | 1071 |
UniProt: | P12644Q53XC5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 2.09e-46 | 36 |
endothelial cell of vascular tree | 8.36e-45 | 24 |
meso-epithelial cell | 1.27e-40 | 45 |
lining cell | 2.87e-38 | 58 |
barrier cell | 2.87e-38 | 58 |
blood vessel endothelial cell | 1.84e-31 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.84e-31 | 18 |
mesodermal cell | 2.85e-23 | 121 |
endothelial cell of artery | 2.47e-21 | 9 |
lymphangioblast | 5.37e-15 | 6 |
endothelial cell of lymphatic vessel | 5.37e-15 | 6 |
vascular lymphangioblast | 5.37e-15 | 6 |
aortic endothelial cell | 1.05e-14 | 6 |
squamous epithelial cell | 6.06e-12 | 63 |
vein endothelial cell | 4.36e-10 | 6 |
embryonic cell | 1.06e-09 | 250 |
glomerular endothelial cell | 2.79e-08 | 5 |
endothelial cell of umbilical vein | 4.42e-08 | 3 |
epithelial cell | 2.00e-07 | 253 |
prostate stromal cell | 3.83e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.