FFCP PHASE1:Hg19::chr13:111358426..111358487,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79587|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25695|TSSclassifier=S|UniProt=F5H623,F5H7A3,B7Z7E6,Q9HA77|association_with_transcript=0bp_to_ENST00000537394,ENST00000542993,NM_024537,uc001vrd.2_5end|description=CAGE_peak_1_at_CARS2_5end|id=chr13:111358426..111358487,-|ontology_enrichment_celltype=CL:0002371!4.19e-18!591;CL:0000144!8.50e-16!625;CL:0000548!8.94e-15!679;CL:0000004!8.94e-15!679;CL:0000255!8.94e-15!679;CL:0000012!1.75e-14!682;CL:0000055!1.57e-12!180;CL:0000003!2.09e-11!722;CL:0000183!1.95e-10!59;CL:0000680!3.58e-10!57;CL:0000056!3.58e-10!57;CL:0000355!3.58e-10!57;CL:0000187!1.53e-09!54;CL:0000723!6.39e-09!436;CL:0000048!1.45e-08!430;CL:0000034!1.14e-07!444;CL:0000057!3.58e-07!75;CL:0000220!3.64e-07!246;CL:0000393!3.71e-07!60;CL:0000211!3.71e-07!60;CL:0000192!3.88e-07!42;CL:0000514!3.88e-07!42;CL:0000063!3.93e-07!578;CL:0000222!7.29e-07!119;CL:0002321!9.24e-07!248|ontology_enrichment_celltype_v019=CL:0000187;6.25e-07;55|ontology_enrichment_celltype_v019_2=CL:0000680,1.61e-10,58;CL:0000056,1.61e-10,58;CL:0000355,1.61e-10,58;CL:0000187,6.94e-10,55;CL:0000723,6.78e-09,433;CL:0000048,1.53e-08,427;CL:0000034,1.21e-07,441;CL:0000192,1.81e-07,43;CL:0000514,1.81e-07,43;CL:0000393,1.85e-07,61;CL:0000211,1.85e-07,61;CL:0000222,3.05e-07,121;CL:0002321,4.47e-07,250;CL:0000057,6.42e-07,76|ontology_enrichment_development_v019=CL:0000355;8.16e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003104!5.28e-11!238;UBERON:0009142!5.28e-11!238;UBERON:0005256!7.37e-11!143;UBERON:0004290!1.50e-10!70;UBERON:0000486!1.83e-10!82;UBERON:0001134!3.12e-10!61;UBERON:0002036!3.12e-10!61;UBERON:0003082!3.12e-10!61;UBERON:0000914!4.66e-10!83;UBERON:0002329!4.66e-10!83;UBERON:0003077!4.66e-10!83;UBERON:0003059!4.66e-10!83;UBERON:0007282!4.66e-10!83;UBERON:0009618!4.66e-10!83;UBERON:0007285!4.66e-10!83;UBERON:0002385!1.10e-09!63;UBERON:0001015!1.10e-09!63;UBERON:0000383!1.10e-09!63|ontology_enrichment_uberon_v019=UBERON:0000353;5.49e-07;15|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.81e-13,78;UBERON:0003104,5.42e-11,160;UBERON:0009142,5.42e-11,160;UBERON:0002329,6.94e-11,71;UBERON:0003059,6.94e-11,71;UBERON:0007282,6.94e-11,71;UBERON:0004290,6.94e-11,71;UBERON:0009618,6.94e-11,71;UBERON:0000486,8.72e-11,83;UBERON:0001134,1.42e-10,62;UBERON:0002036,1.42e-10,62;UBERON:0003082,1.42e-10,62;UBERON:0003077,2.16e-10,72;UBERON:0007285,2.16e-10,72;UBERON:0007524,5.03e-10,73;UBERON:0002385,5.10e-10,64;UBERON:0001015,5.10e-10,64;UBERON:0000383,5.10e-10,64;UBERON:0005256,4.24e-09,122;UBERON:0000353,5.40e-07,15|phase1_expression=65.5858949166709,73.4364796946072,56.3817616383885,33.024188456533,54.0822924257018,46.2339417773195,58.2589719787114,87.8090624063295,60.3338801141627,87.9727492675402,195.38432703228,81.0417490602939,70.953317143454,46.2886160070574,51.035195862099,51.0967111303349,46.4074786578462,56.2338769598277,53.1846750681653,58.9749868187814,77.3162619815719,49.839300715016,48.6601178122796,42.7048206227399,41.1779857870953,35.8378872957891,42.5281053350719,44.3141698796014,42.8767061765305,37.9991104116241,32.8210181430081,69.8760130603985,91.2653933898098,86.8921923891951,58.3328020369671,90.1352933970253,58.1328869882998,50.4135821764008,40.9110672839089,41.2320654360118,42.9917710540655,55.0619232232265,39.1514862803964,18.1747798474456,22.2946806776398,16.7383002219593,16.7348906572093,23.8477375052659,19.2017949954964,19.5630826779062,25.8722313594392,23.6482229888585,30.3376199048224,19.3645405075148,18.9597081232078,16.3770835402066,13.6453075028923,16.6295378489363,17.1406979727705,19.8975996787178,20.4587880255693,16.1627137091491,17.7522655283252,21.7374622771674,24.6677852834296,19.2910976394988,11.8336227309159,23.3661258688771,27.1171117578505,26.062661364614,23.005181100068,22.0966581592539,20.8865175710984,59.1514801673437,48.686384691995,65.2038387531049,59.8711604010819,54.2138583157838,57.3790344508576,53.867408567096,41.7725022118089,67.7684010466792,66.8785728953026,57.8906927937859,56.039082993404,61.449152049577,56.0554381850417,77.0168269539007,58.1719488050679,67.7378165720108,79.6898156753228,58.1364817477229,53.1359787094068,35.686258716337,20.7388168303168,56.3641941418665,33.8340804595793,45.1962377161539,43.1763147898969,50.8246945987661,63.2289197269165,60.6013191340459,58.4480185223734,32.4204429535855,45.9585215660746,46.0790500733932,49.0154993414678,43.9353226659066,39.7981603533227,50.1535609041212,52.782853397097,44.050069031728,63.4666490333619,73.3061868965814,81.5377085678819,42.3776941688898,58.249515027492,53.9495089407729,46.808643023608,52.563293363476,52.0866763085135,40.8694379112801,40.2035567937653,44.667327292892,64.9639778072198,46.8818959047153,49.2676798152628,46.3695509416885,34.4997852560724,33.164788489161,95.0846778624451,61.0337782330309,54.980901592718,53.8544337053004,61.1632250975785,48.523583851875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6,53.7832122433966,22.2596082204287,38.1926205325201,56.334692292866,45.9618757858922,25.2259583611738,47.4341713894678,106.712622296107,49.9968489637325,48.1179700920575,38.4039404643619,49.3738879603147,51.5496660705154,48.6780686863667,46.655794502473,29.5435997711435,35.1508885153183,50.6396332775986,27.9576673771556,46.1672481474949,36.1377364172861,29.4967118936425,33.5186950783946,66.1449049359111,35.0934765255577,40.0285374142735,34.562242481687,35.218229895618,26.5908991899342,22.6714522120936,26.33958674443,22.7679164307238,44.8687619274658,26.6946994511881,28.5811892768376,37.1200492673801,63.5997215886646,54.1481030166128,51.9102933816352,60.6509747289276,54.9190217472721,26.2336771902838,33.0200928713016,28.655135101067,49.8211519697695,55.4874947975496,31.4288033377707,24.8933314615347,37.8511580715636,23.5030794472013,27.3377334514847,22.7355476151302,24.7321659756237,60.7142038010224,47.6984257165749,51.1097513740973,22.5115192780314,28.3632589359902,26.7850917939143,34.6372233885389,24.8855897737019,39.6132212951258,22.0868901704971,24.1991373867136,38.927778142294,22.7698605472386,24.9278811803198,23.2841866541417,34.0368089789732,37.4412052896952,20.4250266890802,66.1442305420542,107.75272902012,60.8915807236512,25.7985911459007,36.4530375300947,39.3453893214489,58.3531955347989,30.599055925254,48.1026818838152,68.1741180096391,65.2144582498889,64.9784082105246,44.3134179584886,75.3774844653701,71.9201136167291,42.7620920692838,20.6196181689645,70.7270559314649,63.0655699725106,15.5479050198931,59.6753420380677,32.7959218202305,56.3263088353468,37.4719245025302,67.2692370176156,44.1997003683817,69.2460811847833,29.4447147238825,24.3786186094016,33.6579324476101,22.7576869663038,26.1165719370345,38.5870790539723,45.6789481453271,40.9176047834525,42.1655113416717,16.7330348442154,23.3607075866785,25.8430368284565,49.0280643996744,47.5795921125887,33.0823391289085,39.5771432157764,60.464399334582,27.6758604838769,41.6415948624516,41.4847865783,64.99993855394,39.909447656195,20.7842395569604,24.2968205777504,27.9445024684659,40.1442635113147,51.8446303705092,44.6394021800102,64.7045880083986,56.6740796382164,31.6677726336048,24.5847536918315,29.2673537336419,22.7435090324619,16.5674791264648,11.3949675423208,24.5693388506528,27.7350035478756,27.6003054060864,20.7292359864695,23.7895890482359,45.2056041630079,41.6612755061546,34.2321222130832,36.3137078630769,36.6671190638606,34.5604069450435,49.1144769168473,37.0118471424834,43.1213959367454,42.2297372401464,35.0004362316261,36.2599788635155,57.3079011021261,33.8325686432358,48.268070571735,29.3728410888539,53.9674167527945,41.3176081338089,33.3654866218906,33.2878387092756,35.2229138784296,45.2001574147559|short_description=p1@CARS2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=79587 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25695 | |||
|TSSclassifier=S | |||
|UniProt=F5H623,F5H7A3,B7Z7E6,Q9HA77 | |||
|association_with_transcript=0bp_to_ENST00000537394,ENST00000542993,NM_024537,uc001vrd.2_5end | |||
|description=CAGE_peak_1_at_CARS2_5end | |||
|id=chr13:111358426..111358487,- | |||
|ontology_enrichment_celltype=CL:0002371!4.19e-18!591;CL:0000144!8.50e-16!625;CL:0000548!8.94e-15!679;CL:0000004!8.94e-15!679;CL:0000255!8.94e-15!679;CL:0000012!1.75e-14!682;CL:0000055!1.57e-12!180;CL:0000003!2.09e-11!722;CL:0000183!1.95e-10!59;CL:0000680!3.58e-10!57;CL:0000056!3.58e-10!57;CL:0000355!3.58e-10!57;CL:0000187!1.53e-09!54;CL:0000723!6.39e-09!436;CL:0000048!1.45e-08!430;CL:0000034!1.14e-07!444;CL:0000057!3.58e-07!75;CL:0000220!3.64e-07!246;CL:0000393!3.71e-07!60;CL:0000211!3.71e-07!60;CL:0000192!3.88e-07!42;CL:0000514!3.88e-07!42;CL:0000063!3.93e-07!578;CL:0000222!7.29e-07!119;CL:0002321!9.24e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0000187;6.25e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.61e-10,58;CL:0000056,1.61e-10,58;CL:0000355,1.61e-10,58;CL:0000187,6.94e-10,55;CL:0000723,6.78e-09,433;CL:0000048,1.53e-08,427;CL:0000034,1.21e-07,441;CL:0000192,1.81e-07,43;CL:0000514,1.81e-07,43;CL:0000393,1.85e-07,61;CL:0000211,1.85e-07,61;CL:0000222,3.05e-07,121;CL:0002321,4.47e-07,250;CL:0000057,6.42e-07,76 | |||
|ontology_enrichment_development_v019=CL:0000355;8.16e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!5.28e-11!238;UBERON:0009142!5.28e-11!238;UBERON:0005256!7.37e-11!143;UBERON:0004290!1.50e-10!70;UBERON:0000486!1.83e-10!82;UBERON:0001134!3.12e-10!61;UBERON:0002036!3.12e-10!61;UBERON:0003082!3.12e-10!61;UBERON:0000914!4.66e-10!83;UBERON:0002329!4.66e-10!83;UBERON:0003077!4.66e-10!83;UBERON:0003059!4.66e-10!83;UBERON:0007282!4.66e-10!83;UBERON:0009618!4.66e-10!83;UBERON:0007285!4.66e-10!83;UBERON:0002385!1.10e-09!63;UBERON:0001015!1.10e-09!63;UBERON:0000383!1.10e-09!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0000353;5.49e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.81e-13,78;UBERON:0003104,5.42e-11,160;UBERON:0009142,5.42e-11,160;UBERON:0002329,6.94e-11,71;UBERON:0003059,6.94e-11,71;UBERON:0007282,6.94e-11,71;UBERON:0004290,6.94e-11,71;UBERON:0009618,6.94e-11,71;UBERON:0000486,8.72e-11,83;UBERON:0001134,1.42e-10,62;UBERON:0002036,1.42e-10,62;UBERON:0003082,1.42e-10,62;UBERON:0003077,2.16e-10,72;UBERON:0007285,2.16e-10,72;UBERON:0007524,5.03e-10,73;UBERON:0002385,5.10e-10,64;UBERON:0001015,5.10e-10,64;UBERON:0000383,5.10e-10,64;UBERON:0005256,4.24e-09,122;UBERON:0000353,5.40e-07,15 | |||
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| |||
|short_description=p1@CARS2 | |||
}} |
Revision as of 01:30, 11 September 2013
Short description: | p1@CARS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CARS2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000537394, ENST00000542993, NM_024537, uc001vrd.2_5end |
EntrezGene: | CARS2 |
HGNC: | 25695 |
UniProt: | F5H623F5H7A3B7Z7E6Q9HA77 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.61e-10 | 58 |
myoblast | 1.61e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.61e-10 | 58 |
muscle cell | 6.94e-10 | 55 |
somatic stem cell | 6.78e-09 | 433 |
multi fate stem cell | 1.53e-08 | 427 |
stem cell | 1.21e-07 | 441 |
smooth muscle cell | 1.81e-07 | 43 |
smooth muscle myoblast | 1.81e-07 | 43 |
electrically responsive cell | 1.85e-07 | 61 |
electrically active cell | 1.85e-07 | 61 |
mesodermal cell | 3.05e-07 | 121 |
embryonic cell | 4.47e-07 | 250 |
fibroblast | 6.42e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.81e-13 | 78 |
mesenchyme | 5.42e-11 | 160 |
entire embryonic mesenchyme | 5.42e-11 | 160 |
somite | 6.94e-11 | 71 |
presomitic mesoderm | 6.94e-11 | 71 |
presumptive segmental plate | 6.94e-11 | 71 |
dermomyotome | 6.94e-11 | 71 |
trunk paraxial mesoderm | 6.94e-11 | 71 |
multilaminar epithelium | 8.72e-11 | 83 |
skeletal muscle tissue | 1.42e-10 | 62 |
striated muscle tissue | 1.42e-10 | 62 |
myotome | 1.42e-10 | 62 |
paraxial mesoderm | 2.16e-10 | 72 |
presumptive paraxial mesoderm | 2.16e-10 | 72 |
dense mesenchyme tissue | 5.03e-10 | 73 |
muscle tissue | 5.10e-10 | 64 |
musculature | 5.10e-10 | 64 |
musculature of body | 5.10e-10 | 64 |
trunk mesenchyme | 4.24e-09 | 122 |
parenchyma | 5.40e-07 | 15 |
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