FFCP PHASE1:Hg19::chr12:110883346..110883368,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10094|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=706|TSSclassifier=S|UniProt=F8VYX8|association_with_transcript=0bp_to_ENST00000548878,ENST00000550231_5end|description=CAGE_peak_2_at_ARPC3_5end|id=chr12:110883346..110883368,-|ontology_enrichment_celltype=CL:0000766!1.08e-14!76;CL:0000557!6.03e-14!71;CL:0002009!3.00e-13!65;CL:0000839!8.80e-13!70;CL:0002194!1.01e-12!63;CL:0000576!1.01e-12!63;CL:0000040!1.01e-12!63;CL:0000559!1.01e-12!63;CL:0000763!4.57e-12!112;CL:0000049!4.57e-12!112;CL:0000738!5.21e-11!140;CL:0000037!3.44e-10!172;CL:0000566!3.44e-10!172;CL:0002057!5.19e-10!42;CL:0002032!1.36e-09!165;CL:0000837!1.36e-09!165;CL:0000860!1.50e-09!45;CL:0002031!3.80e-09!124;CL:0002087!8.62e-09!119;CL:0000988!1.00e-08!182;CL:0000048!1.12e-07!430;CL:0000723!1.63e-07!436;CL:0000134!1.89e-07!358;CL:0002320!2.10e-07!365;CL:0000034!6.34e-07!444|ontology_enrichment_celltype_v019=CL:0000473;1.21e-11;39!CL:0000234;1.21e-11;39!CL:0000860;2.56e-10;33!CL:0002057;2.56e-10;33!CL:0000766;3.66e-09;69!CL:0000576;4.73e-08;48|ontology_enrichment_celltype_v019_2=CL:0000766,6.70e-21,72;CL:0000839,6.27e-19,66;CL:0000557,1.71e-18,67;CL:0002194,4.14e-18,59;CL:0000576,4.14e-18,59;CL:0000040,4.14e-18,59;CL:0000559,4.14e-18,59;CL:0000473,7.77e-18,48;CL:0000234,7.77e-18,48;CL:0002009,3.29e-17,61;CL:0000860,1.26e-14,42;CL:0002057,1.26e-14,42;CL:0000763,1.94e-13,108;CL:0000049,1.94e-13,108;CL:0000738,4.38e-11,136;CL:0002031,1.14e-10,120;CL:0002087,5.00e-10,115;CL:0002032,3.07e-09,161;CL:0000837,3.07e-09,161;CL:0000037,7.06e-09,168;CL:0000988,2.49e-08,177|ontology_enrichment_development_v019=CL:0002057;1.77e-10;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!5.00e-13!80;UBERON:0001474!3.47e-12!86;UBERON:0002405!3.01e-11!115;UBERON:0004765!4.46e-10!101;UBERON:0001434!4.46e-10!101;UBERON:0002193!6.16e-10!112;UBERON:0002390!1.49e-09!102;UBERON:0003061!1.49e-09!102;UBERON:0002384!5.01e-07!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.38e-17,76;UBERON:0002405,2.03e-17,93;UBERON:0002390,6.60e-17,98;UBERON:0003061,6.60e-17,98;UBERON:0002193,4.22e-16,108;UBERON:0001474,1.62e-15,82;UBERON:0004765,3.27e-13,90;UBERON:0001434,6.91e-11,100;UBERON:0003081,1.12e-09,203;UBERON:0000926,5.33e-07,315;UBERON:0004120,5.33e-07,315;UBERON:0006603,5.33e-07,315|phase1_expression=0.54503513781167,0.642301571672949,0.422863212287913,1.0007329835313,0.446961094427288,1.74467704820074,2.53299878168311,0,0.522371256399677,0.491467873003018,0,0,0,0.37129905888014,0.331397375727916,2.6893005858071,0.602694528023977,0.730310090387373,0.975865597581014,0.246242116153576,0,0,0,0.547497700291537,0.251085279189606,0.382067028739756,0.492603536699674,0.314843125254717,0.393364276848904,0.767658796194425,0.619264493264304,0,0.30120591877825,0.739508020333575,0.0774672005803016,0.142169232487422,0.293600439334847,0.553995408531877,1.80490002723128,0.217010870715852,1.11957737119962,0.647787332037959,0.515151135268373,1.59938062657521,1.13362783106643,0.727752183563449,1.62700325833979,1.23350366406548,0.619412741790207,1.43846196161075,0.768482119587302,0.236482229888585,1.03423704220986,2.5819387343353,0,1.88242339542605,0.272906150057846,0.898893937780338,3.36692281607993,0,1.27867425159808,1.31940520074686,1.19678194572979,0.426224750532694,1.16083695451434,0.56738522469114,1.24564449799115,1.7587406567972,0.521482918420201,0,1.21079900526674,1.10483290796269,0.316462387440884,1.69004229049553,1.4882300997553,1.25795187305026,1.12328631146495,1.65194582125657,0.32145117339416,0.855038231223746,1.79025009479181,0.547992461293902,0,0.546138611262131,1.77901850772711,0.426730222566507,0.400395987036012,1.14950487990897,0,0,0.569212969109448,1.17447437874188,1.14681968437569,0,0,0.263384084775077,0.196709770113833,0.786021525498329,0,0.83593247695339,0,0,0,0.445641827540694,0.294605907474837,0.221533894583621,0,1.15282187753108,0.780356085359269,0.328875809207352,0.829050053357545,0.289803085735052,0.593146252648242,0,0,0.679856056185397,1.53288197440768,0,0.253019692019503,0.637130828648193,0,0.950452044448374,0.150575119077773,0.127986611154418,0,0.473554504088034,0.821127996921047,0,0.267440195783507,0.144824403882799,0,0.670700859703636,0,0,0,0.579386075843295,0,0.486634870302636,0.189069634328136,0.886917589850256,0.614843499851882,0.130979075497713,0,0,12.9818957461873,15.8458060942333,5.85015026283007,0.953962497221368,0.571994910780128,0.74291500265913,0,0,0,0.56530794192401,1.25849830862972,0.275118041940067,0.626984899610432,1.03366703667732,0.35576626268671,0.33472061276467,0.402829317109147,1.52054421143703,0.24406205754817,0,0,0.357198913136319,0.673588117878509,0.225222960966644,0,0,0.366403487860815,0,0,0.436094052142534,0,0.886413581652058,0.132409180813219,0,0.354668382198357,0,0,0.24666754841716,0,0.67355336034844,0.490385709340376,0.454072282934794,0.57617592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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10094 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=706 | |||
|TSSclassifier=S | |||
|UniProt=F8VYX8 | |||
|association_with_transcript=0bp_to_ENST00000548878,ENST00000550231_5end | |||
|description=CAGE_peak_2_at_ARPC3_5end | |||
|id=chr12:110883346..110883368,- | |||
|ontology_enrichment_celltype=CL:0000766!1.08e-14!76;CL:0000557!6.03e-14!71;CL:0002009!3.00e-13!65;CL:0000839!8.80e-13!70;CL:0002194!1.01e-12!63;CL:0000576!1.01e-12!63;CL:0000040!1.01e-12!63;CL:0000559!1.01e-12!63;CL:0000763!4.57e-12!112;CL:0000049!4.57e-12!112;CL:0000738!5.21e-11!140;CL:0000037!3.44e-10!172;CL:0000566!3.44e-10!172;CL:0002057!5.19e-10!42;CL:0002032!1.36e-09!165;CL:0000837!1.36e-09!165;CL:0000860!1.50e-09!45;CL:0002031!3.80e-09!124;CL:0002087!8.62e-09!119;CL:0000988!1.00e-08!182;CL:0000048!1.12e-07!430;CL:0000723!1.63e-07!436;CL:0000134!1.89e-07!358;CL:0002320!2.10e-07!365;CL:0000034!6.34e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.21e-11;39!CL:0000234;1.21e-11;39!CL:0000860;2.56e-10;33!CL:0002057;2.56e-10;33!CL:0000766;3.66e-09;69!CL:0000576;4.73e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,6.70e-21,72;CL:0000839,6.27e-19,66;CL:0000557,1.71e-18,67;CL:0002194,4.14e-18,59;CL:0000576,4.14e-18,59;CL:0000040,4.14e-18,59;CL:0000559,4.14e-18,59;CL:0000473,7.77e-18,48;CL:0000234,7.77e-18,48;CL:0002009,3.29e-17,61;CL:0000860,1.26e-14,42;CL:0002057,1.26e-14,42;CL:0000763,1.94e-13,108;CL:0000049,1.94e-13,108;CL:0000738,4.38e-11,136;CL:0002031,1.14e-10,120;CL:0002087,5.00e-10,115;CL:0002032,3.07e-09,161;CL:0000837,3.07e-09,161;CL:0000037,7.06e-09,168;CL:0000988,2.49e-08,177 | |||
|ontology_enrichment_development_v019=CL:0002057;1.77e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.00e-13!80;UBERON:0001474!3.47e-12!86;UBERON:0002405!3.01e-11!115;UBERON:0004765!4.46e-10!101;UBERON:0001434!4.46e-10!101;UBERON:0002193!6.16e-10!112;UBERON:0002390!1.49e-09!102;UBERON:0003061!1.49e-09!102;UBERON:0002384!5.01e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.38e-17,76;UBERON:0002405,2.03e-17,93;UBERON:0002390,6.60e-17,98;UBERON:0003061,6.60e-17,98;UBERON:0002193,4.22e-16,108;UBERON:0001474,1.62e-15,82;UBERON:0004765,3.27e-13,90;UBERON:0001434,6.91e-11,100;UBERON:0003081,1.12e-09,203;UBERON:0000926,5.33e-07,315;UBERON:0004120,5.33e-07,315;UBERON:0006603,5.33e-07,315 | |||
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| |||
|short_description=p2@ARPC3 | |||
}} |
Revision as of 20:50, 10 September 2013
Short description: | p2@ARPC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_ARPC3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000548878, ENST00000550231_5end |
EntrezGene: | ARPC3 |
HGNC: | 706 |
UniProt: | F8VYX8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 6.70e-21 | 72 |
myeloid lineage restricted progenitor cell | 6.27e-19 | 66 |
granulocyte monocyte progenitor cell | 1.71e-18 | 67 |
monopoietic cell | 4.14e-18 | 59 |
monocyte | 4.14e-18 | 59 |
monoblast | 4.14e-18 | 59 |
promonocyte | 4.14e-18 | 59 |
defensive cell | 7.77e-18 | 48 |
phagocyte | 7.77e-18 | 48 |
macrophage dendritic cell progenitor | 3.29e-17 | 61 |
classical monocyte | 1.26e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.26e-14 | 42 |
myeloid cell | 1.94e-13 | 108 |
common myeloid progenitor | 1.94e-13 | 108 |
leukocyte | 4.38e-11 | 136 |
hematopoietic lineage restricted progenitor cell | 1.14e-10 | 120 |
nongranular leukocyte | 5.00e-10 | 115 |
hematopoietic oligopotent progenitor cell | 3.07e-09 | 161 |
hematopoietic multipotent progenitor cell | 3.07e-09 | 161 |
hematopoietic stem cell | 7.06e-09 | 168 |
hematopoietic cell | 2.49e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.38e-17 | 76 |
immune system | 2.03e-17 | 93 |
hematopoietic system | 6.60e-17 | 98 |
blood island | 6.60e-17 | 98 |
hemolymphoid system | 4.22e-16 | 108 |
bone element | 1.62e-15 | 82 |
skeletal element | 3.27e-13 | 90 |
skeletal system | 6.91e-11 | 100 |
lateral plate mesoderm | 1.12e-09 | 203 |
mesoderm | 5.33e-07 | 315 |
mesoderm-derived structure | 5.33e-07 | 315 |
presumptive mesoderm | 5.33e-07 | 315 |
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