FFCP PHASE1:Hg19::chr12:104681545..104681558,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:104681545..104681558,+|id=chr12:104681545..104681558,+|ontology_enrichment_celltype=CL:0000077!1.87e-14!19;CL:0000860!3.73e-11!45;CL:0002057!1.57e-09!42;CL:0002009!2.37e-07!65;CL:0002194!4.72e-07!63;CL:0000576!4.72e-07!63;CL:0000040!4.72e-07!63;CL:0000559!4.72e-07!63|ontology_enrichment_celltype_v019=CL:0000077;7.07e-18;19!CL:0000860;1.85e-10;33!CL:0002057;1.85e-10;33!CL:0000473;2.50e-08;39!CL:0000234;2.50e-08;39!CL:0000511;6.92e-07;1!CL:0002625;6.92e-07;1!CL:0002581;6.92e-07;1!CL:0000216;6.92e-07;1|ontology_enrichment_celltype_v019_2=CL:0000077,1.15e-17,19;CL:0000860,1.73e-09,42;CL:0002057,1.73e-09,42;CL:0000473,4.08e-08,48;CL:0000234,4.08e-08,48;CL:0002009,2.19e-07,61;CL:0000511,3.78e-07,1;CL:0002625,3.78e-07,1;CL:0000216,3.78e-07,1;CL:0002581,6.02e-07,1|ontology_enrichment_development_v019=CL:0002057;4.12e-08;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060084;1.09e-08;3!DOID:127;1.09e-08;3|ontology_enrichment_disease_v019_2=DOID:0060084,7.21e-09,3;DOID:127,7.21e-09,3;DOID:0060072,7.59e-07,4|ontology_enrichment_uberon=UBERON:0001737!1.09e-08!9|ontology_enrichment_uberon_v019=UBERON:0001136;6.92e-07;1!UBERON:0001343;6.92e-07;1!UBERON:0007195;6.92e-07;1!UBERON:0004910;6.92e-07;1!UBERON:0004813;6.92e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0001136,3.78e-07,1;UBERON:0001343,3.78e-07,1;UBERON:0004910,3.78e-07,1;UBERON:0005154,3.78e-07,1;UBERON:0005295,3.78e-07,1;UBERON:0004813,3.78e-07,1;UBERON:0005297,3.78e-07,1;UBERON:0005294,3.78e-07,1;UBERON:0010141,3.78e-07,1;UBERON:0005891,3.78e-07,1;UBERON:0002371,8.24e-07,76|phase1_expression=0.54503513781167,0.214100523890983,0.986680828671798,0,0.893922188854576,0,0,0,0,0,0,0,0,0,0,0,1.20538905604795,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0.142169232487422,0,0,0,0,0,0,0,0.145398238779565,0,0.242584061187816,0.232429036905685,0.411167888021826,1.54853185447552,1.7261543539329,2.30544635876191,0,0.689491361473237,0,1.35426486594342,0.188242339542605,0.545812300115692,0.449446968890169,0.306083892370903,0.962787081228281,0.639337125799041,0,0.598390972864896,0,1.16083695451434,0.56738522469114,0.622822248995575,2.51248665256743,1.5644487552606,0,0.605399502633369,1.84138817993782,1.26584954976354,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0.348259474598534,0.132957960518865,0,0,0,0.39752481473341,0,0,0,0,0,0.208994966536811,0.258416759169329,0,0.33472061276467,0,0.760272105718513,0.24406205754817,0.367663080345869,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0.379891534993739,2.1185468930115,0.860509862246441,0,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0.453728732640084,0.179389635688862,0.213557388818567,0,0,0.309157587715317,0.257640540045629,0,0.168776332241266,0.0974370051611986,0.504867548488229,0.184099797284599,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,1.38134921352481,0,0,0.236613600079688,0.505754070234305,0.482022059766964,1.32352767278873,0.435758888184812,1.42362371466658,0.404493924480493,0.392442930250692,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0.433099343283221,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.428933980974443,0,0,0,0,0,0.904318131178758,0.871533458600294,0.799783929456456,0,0,0,0,0,0,0.434343920002738,0.205476322550383,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03985430765404,0.178428988797162,0.788512075169673,0.35142424497814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0.280660094433074,0.896974044789907,1.53512174720011,0,1.48418066444991,0,0,0.0821271560138091,0,0,0,0.200506470303285,0,0.574072240823034,0,0.131124414959424,0,0.0770153371044148,0,0,0.316654886678627,0,0,0.215915916102139,0,0,0,0,0,0,0,0.261435451024901,0.512900250232778,0,0,0,0,0.082509499920588,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0,0.62962469366128,0,0,0,0,0.55597265731176,0,0.372158369359667,0,0.571890581771475,0,0.42793898803392,0,0,0,0,0,0.404364963146632,1.58510321173008,0,0,0.487426979262569,1.05650146756755,0.136499911407986,0,0,0,0.66343897524122,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6023610669121,0.962479855263359,0,0,0,0,0,0,0,0.423347165447766,0,0,0,0.156679895773023,0,0.169291777801603,0,0.201799707191048,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0.37428108081644,0,0,0,0.284136146806413,0,0,0,0,0,0.222617410045812,0,0,0,0,0,0,0,0,0.179736702294654,0.179021174675609,0.511572370226872,0.197286811273867,0,1.11136990144637,0,0,0,0.260427761085233,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0.632994193584081,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.485560759068186,0,0,0,0,0.150323419414493,0,0,0.330991955875499,0.941798755221676,0,0,0.277349346026277,0,0,0,0,0.687944129886466,0.483781656445426,0.292357268344742,0.328461828212837,0,0,0,0.137041924646751,0,0,0,1.92381168603681,0,0,0,0.343609788497747,0.171594997861965,0,0,0,0.135904206073614,0,0.611989305817931,0.288950589901519,0,0,0,0,0.262887354279314,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,1.18112977817699,0,0,0.136203406111576,0,0.137539436597234,0,0,1.5476039091159,0.0607495566580247,0,0,0.0524545881349981,0,0.179287339332845,0.191915197319445,0,0,0,1.62899880526114,3.45688596480507,0,0,0,0,0.113312091520126,0,0,0,0,0.513260513652988,0,0.106787412567695,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0.457680136793847,0.151230923763239,0,0,0.159296767163702,0,0,0,0.53168342911599,0,0,1.14241563650639,0,0,0,0,0,0.400027764663154,0,0,0,1.34833881285112,0,1.30497145982606,0.453411851024545,1.15761237161917,0.489473409012935,0.358177682162975,0,0.438568099157414,0.530067437837643,3.66536672714738,1.35153952522458,0.256241518587947,1.0362910251936,2.43087964941906,0.138258436151731,0.194860308839388,0.132864840313363,0,0.327609848846413,0.737318726261158,0,0,0,0,0,0,0,0,0.255788742607303,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0.606965604236632,0,0,0,0.171488009437418,0,0,1.53651993149159,0.111231401892069,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.223710863595585,0.098150233615243,0.243835849964539,0,0,0,0,0,0,0,0.5647304101948,0,0,0.0771741581079447,0,0,0.490296643507811,0,0,0,0,0.169927114687817,0,0,0,0.357107877211315,0,0.0802413666891683,0,0,0.143339583151451,0,0,0,0,0.371995018166751,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0.533636729388577,0,0.0898252021065869,0,0,0,0,0,0|short_description=p@chr12:104681545..104681558,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:104681545..104681558,+ | |||
|id=chr12:104681545..104681558,+ | |||
|ontology_enrichment_celltype=CL:0000077!1.87e-14!19;CL:0000860!3.73e-11!45;CL:0002057!1.57e-09!42;CL:0002009!2.37e-07!65;CL:0002194!4.72e-07!63;CL:0000576!4.72e-07!63;CL:0000040!4.72e-07!63;CL:0000559!4.72e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000077;7.07e-18;19!CL:0000860;1.85e-10;33!CL:0002057;1.85e-10;33!CL:0000473;2.50e-08;39!CL:0000234;2.50e-08;39!CL:0000511;6.92e-07;1!CL:0002625;6.92e-07;1!CL:0002581;6.92e-07;1!CL:0000216;6.92e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,1.15e-17,19;CL:0000860,1.73e-09,42;CL:0002057,1.73e-09,42;CL:0000473,4.08e-08,48;CL:0000234,4.08e-08,48;CL:0002009,2.19e-07,61;CL:0000511,3.78e-07,1;CL:0002625,3.78e-07,1;CL:0000216,3.78e-07,1;CL:0002581,6.02e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002057;4.12e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.09e-08;3!DOID:127;1.09e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,7.21e-09,3;DOID:127,7.21e-09,3;DOID:0060072,7.59e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.09e-08!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001136;6.92e-07;1!UBERON:0001343;6.92e-07;1!UBERON:0007195;6.92e-07;1!UBERON:0004910;6.92e-07;1!UBERON:0004813;6.92e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,3.78e-07,1;UBERON:0001343,3.78e-07,1;UBERON:0004910,3.78e-07,1;UBERON:0005154,3.78e-07,1;UBERON:0005295,3.78e-07,1;UBERON:0004813,3.78e-07,1;UBERON:0005297,3.78e-07,1;UBERON:0005294,3.78e-07,1;UBERON:0010141,3.78e-07,1;UBERON:0005891,3.78e-07,1;UBERON:0002371,8.24e-07,76 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.986680828671798,0,0.893922188854576,0,0,0,0,0,0,0,0,0,0,0,1.20538905604795,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0.142169232487422,0,0,0,0,0,0,0,0.145398238779565,0,0.242584061187816,0.232429036905685,0.411167888021826,1.54853185447552,1.7261543539329,2.30544635876191,0,0.689491361473237,0,1.35426486594342,0.188242339542605,0.545812300115692,0.449446968890169,0.306083892370903,0.962787081228281,0.639337125799041,0,0.598390972864896,0,1.16083695451434,0.56738522469114,0.622822248995575,2.51248665256743,1.5644487552606,0,0.605399502633369,1.84138817993782,1.26584954976354,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0.348259474598534,0.132957960518865,0,0,0,0.39752481473341,0,0,0,0,0,0.208994966536811,0.258416759169329,0,0.33472061276467,0,0.760272105718513,0.24406205754817,0.367663080345869,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0.379891534993739,2.1185468930115,0.860509862246441,0,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0.453728732640084,0.179389635688862,0.213557388818567,0,0,0.309157587715317,0.257640540045629,0,0.168776332241266,0.0974370051611986,0.504867548488229,0.184099797284599,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,1.38134921352481,0,0,0.236613600079688,0.505754070234305,0.482022059766964,1.32352767278873,0.435758888184812,1.42362371466658,0.404493924480493,0.392442930250692,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0.433099343283221,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.428933980974443,0,0,0,0,0,0.904318131178758,0.871533458600294,0.799783929456456,0,0,0,0,0,0,0.434343920002738,0.205476322550383,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03985430765404,0.178428988797162,0.788512075169673,0.35142424497814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0.280660094433074,0.896974044789907,1.53512174720011,0,1.48418066444991,0,0,0.0821271560138091,0,0,0,0.200506470303285,0,0.574072240823034,0,0.131124414959424,0,0.0770153371044148,0,0,0.316654886678627,0,0,0.215915916102139,0,0,0,0,0,0,0,0.261435451024901,0.512900250232778,0,0,0,0,0.082509499920588,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0,0.62962469366128,0,0,0,0,0.55597265731176,0,0.372158369359667,0,0.571890581771475,0,0.42793898803392,0,0,0,0,0,0.404364963146632,1.58510321173008,0,0,0.487426979262569,1.05650146756755,0.136499911407986,0,0,0,0.66343897524122,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6023610669121,0.962479855263359,0,0,0,0,0,0,0,0.423347165447766,0,0,0,0.156679895773023,0,0.169291777801603,0,0.201799707191048,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0.37428108081644,0,0,0,0.284136146806413,0,0,0,0,0,0.222617410045812,0,0,0,0,0,0,0,0,0.179736702294654,0.179021174675609,0.511572370226872,0.197286811273867,0,1.11136990144637,0,0,0,0.260427761085233,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0.632994193584081,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.485560759068186,0,0,0,0,0.150323419414493,0,0,0.330991955875499,0.941798755221676,0,0,0.277349346026277,0,0,0,0,0.687944129886466,0.483781656445426,0.292357268344742,0.328461828212837,0,0,0,0.137041924646751,0,0,0,1.92381168603681,0,0,0,0.343609788497747,0.171594997861965,0,0,0,0.135904206073614,0,0.611989305817931,0.288950589901519,0,0,0,0,0.262887354279314,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,1.18112977817699,0,0,0.136203406111576,0,0.137539436597234,0,0,1.5476039091159,0.0607495566580247,0,0,0.0524545881349981,0,0.179287339332845,0.191915197319445,0,0,0,1.62899880526114,3.45688596480507,0,0,0,0,0.113312091520126,0,0,0,0,0.513260513652988,0,0.106787412567695,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0.457680136793847,0.151230923763239,0,0,0.159296767163702,0,0,0,0.53168342911599,0,0,1.14241563650639,0,0,0,0,0,0.400027764663154,0,0,0,1.34833881285112,0,1.30497145982606,0.453411851024545,1.15761237161917,0.489473409012935,0.358177682162975,0,0.438568099157414,0.530067437837643,3.66536672714738,1.35153952522458,0.256241518587947,1.0362910251936,2.43087964941906,0.138258436151731,0.194860308839388,0.132864840313363,0,0.327609848846413,0.737318726261158,0,0,0,0,0,0,0,0,0.255788742607303,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0.606965604236632,0,0,0,0.171488009437418,0,0,1.53651993149159,0.111231401892069,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.223710863595585,0.098150233615243,0.243835849964539,0,0,0,0,0,0,0,0.5647304101948,0,0,0.0771741581079447,0,0,0.490296643507811,0,0,0,0,0.169927114687817,0,0,0,0.357107877211315,0,0.0802413666891683,0,0,0.143339583151451,0,0,0,0,0.371995018166751,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0.533636729388577,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p@chr12:104681545..104681558,+ | |||
}} |
Revision as of 20:33, 10 September 2013
Short description: | p@chr12:104681545..104681558, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:104681545..104681558, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 1.15e-17 | 19 |
classical monocyte | 1.73e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.73e-09 | 42 |
defensive cell | 4.08e-08 | 48 |
phagocyte | 4.08e-08 | 48 |
macrophage dendritic cell progenitor | 2.19e-07 | 61 |
androgen binding protein secreting cell | 3.78e-07 | 1 |
seminiferous tubule epithelial cell | 3.78e-07 | 1 |
Sertoli cell | 3.78e-07 | 1 |
perirenal preadipocyte | 6.02e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 3.78e-07 | 1 |
seminiferous tubule of testis | 3.78e-07 | 1 |
epithelium of male gonad | 3.78e-07 | 1 |
epithelial cord | 3.78e-07 | 1 |
sex cord | 3.78e-07 | 1 |
seminiferous tubule epithelium | 3.78e-07 | 1 |
testis sex cord | 3.78e-07 | 1 |
genital ridge | 3.78e-07 | 1 |
primitive sex cord of indifferent gonad | 3.78e-07 | 1 |
coelomic epithelium | 3.78e-07 | 1 |
bone marrow | 8.24e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 7.21e-09 | 3 |
leiomyoma | 7.21e-09 | 3 |
benign neoplasm | 7.59e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.