FFCP PHASE1:Hg19::chr12:69202709..69202716,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4193|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6973|TSSclassifier=S|UniProt=A7UKX8,E7EMW5,A7UKY0,A7UKX7|association_with_transcript=-80bp_to_ENST00000393415,ENST00000523991,ENST00000539479,ENST00000543323,uc001sun.3,uc009zqy.1,uc009zqz.2,uc009zra.2_5end|description=CAGE_peak_3_at_MDM2_5end|id=chr12:69202709..69202716,+|ontology_enrichment_celltype=CL:0000048!1.36e-19!430;CL:0000034!6.96e-19!444;CL:0000723!2.14e-18!436;CL:0000144!2.94e-18!625;CL:0002371!1.92e-14!591;CL:0000003!2.83e-14!722;CL:0000548!9.99e-14!679;CL:0000004!9.99e-14!679;CL:0000255!9.99e-14!679;CL:0000012!3.82e-13!682;CL:0000055!2.94e-11!180;CL:0000222!5.81e-10!119;CL:0002320!1.06e-09!365;CL:0000134!1.08e-09!358;CL:0000192!5.44e-09!42;CL:0000514!5.44e-09!42;CL:0002057!1.20e-08!42;CL:0000359!1.79e-08!32;CL:0000839!1.94e-08!70;CL:0000680!4.19e-08!57;CL:0000056!4.19e-08!57;CL:0000355!4.19e-08!57;CL:0000219!5.74e-08!390;CL:0000766!7.28e-08!76;CL:0000187!9.74e-08!54;CL:0000393!1.03e-07!60;CL:0000211!1.03e-07!60;CL:0000557!3.09e-07!71;CL:0000860!4.37e-07!45;CL:0002009!4.95e-07!65;CL:0002194!6.22e-07!63;CL:0000576!6.22e-07!63;CL:0000040!6.22e-07!63;CL:0000559!6.22e-07!63|ontology_enrichment_celltype_v019=CL:0000860;1.53e-08;33!CL:0002057;1.53e-08;33!CL:0000473;2.64e-08;39!CL:0000234;2.64e-08;39!CL:0000359;7.29e-08;32|ontology_enrichment_celltype_v019_2=CL:0000048,3.24e-20,427;CL:0000034,9.23e-20,441;CL:0000723,3.02e-19,433;CL:0000134,2.99e-11,354;CL:0002320,3.92e-11,361;CL:0000839,2.37e-09,66;CL:0000473,3.02e-09,48;CL:0000234,3.02e-09,48;CL:0000766,6.64e-09,72;CL:0000219,1.13e-08,386;CL:0000359,3.23e-08,32;CL:0000860,3.86e-08,42;CL:0002057,3.86e-08,42;CL:0000192,4.07e-08,43;CL:0000514,4.07e-08,43;CL:0002194,5.92e-08,59;CL:0000576,5.92e-08,59;CL:0000040,5.92e-08,59;CL:0000559,5.92e-08,59;CL:0000557,7.85e-08,67;CL:0002009,8.49e-08,61;CL:0000222,1.74e-07,121|ontology_enrichment_development_v019=CL:0002057;8.63e-07;42|ontology_enrichment_disease=DOID:2394!1.36e-07!14|ontology_enrichment_disease_v019=DOID:2394;4.55e-09;14|ontology_enrichment_disease_v019_2=DOID:2394,5.97e-09,14|ontology_enrichment_uberon=UBERON:0003081!2.99e-13!216;UBERON:0002204!2.56e-12!167;UBERON:0004535!8.48e-11!110;UBERON:0001009!1.13e-10!113;UBERON:0000926!3.63e-10!448;UBERON:0004120!3.63e-10!448;UBERON:0006603!3.63e-10!448;UBERON:0002384!4.68e-10!375;UBERON:0002049!4.82e-10!79;UBERON:0007798!4.82e-10!79;UBERON:0001637!1.34e-09!42;UBERON:0003509!1.34e-09!42;UBERON:0004572!1.34e-09!42;UBERON:0000055!2.62e-09!69;UBERON:0001981!9.15e-09!60;UBERON:0007500!9.15e-09!60;UBERON:0004537!9.15e-09!60;UBERON:0006965!9.15e-09!60;UBERON:0004872!3.36e-08!84;UBERON:0002371!7.36e-08!80;UBERON:0002193!1.44e-07!112;UBERON:0004573!1.74e-07!33;UBERON:0004571!1.74e-07!33;UBERON:0001474!4.46e-07!86;UBERON:0004290!9.08e-07!70|ontology_enrichment_uberon_v019=UBERON:0001637;2.83e-07;42!UBERON:0003509;2.83e-07;42!UBERON:0004572;2.83e-07;42!UBERON:0004573;5.38e-07;33!UBERON:0004571;5.38e-07;33|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.04e-14,315;UBERON:0004120,1.04e-14,315;UBERON:0006603,1.04e-14,315;UBERON:0003081,6.58e-13,203;UBERON:0002384,5.86e-12,371;UBERON:0002204,1.39e-11,167;UBERON:0004535,5.65e-10,109;UBERON:0001637,1.01e-09,42;UBERON:0003509,1.01e-09,42;UBERON:0004572,1.01e-09,42;UBERON:0001009,1.06e-09,112;UBERON:0002049,4.22e-09,78;UBERON:0007798,4.22e-09,78;UBERON:0000055,1.53e-08,68;UBERON:0002371,2.57e-08,76;UBERON:0007500,3.99e-08,59;UBERON:0001981,3.99e-08,59;UBERON:0004537,3.99e-08,59;UBERON:0006965,3.99e-08,59;UBERON:0004573,1.20e-07,33;UBERON:0004571,1.20e-07,33;UBERON:0001474,1.43e-07,82;UBERON:0004872,2.00e-07,83;UBERON:0002193,2.26e-07,108;UBERON:0002390,4.45e-07,98;UBERON:0003061,4.45e-07,98;UBERON:0001434,6.55e-07,100;UBERON:0004765,7.72e-07,90|phase1_expression=2.54349730978779,4.06790995392868,3.38290569830331,0,2.23480547213644,1.74467704820074,2.53299878168311,7.58063848112197,1.30592814099919,1.22866968250754,0,0.218441372130172,0.263766978228454,1.11389717664042,1.98838425436749,6.72325146451775,6.02694528023977,3.65155045193687,3.41552959153355,0,0.204000691244253,0.626909442956176,0.286235987131057,1.23186982565596,0.627713197974014,0.916960868975415,0.656804715599566,1.49550484495991,2.36018566109342,1.53531759238885,2.94150634300544,0,0,0,5.03536803771961,3.83856927716038,0.293600439334847,1.10799081706375,2.00544447470142,1.51907609501096,0.447830948479849,1.29557466407592,0.515151135268373,4.21654892460738,4.53451132426571,1.69808842831471,5.11343881192506,4.11167888021826,4.02618282163635,1.7261543539329,1.2808035326455,1.89185783910868,5.5159308917859,6.45484683583826,8.12558919566051,2.63539275359647,3.82068610080984,4.49446968890169,3.67300670845083,3.20929027076094,3.19668562899521,0,1.39624560335142,0.852449501065388,5.22376629531451,1.70215567407342,2.4912889959823,1.00499466102697,1.0429658368404,1.52032191293582,2.42159801053347,3.68277635987565,4.74693581161327,0.845021145247767,1.4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,0,0.392616934229891,1.48523200163543,0,0.339854229375634,0.375935671919414,0.515663103788617,0.0999411559249289,0,1.05868461514708,0,0,0,0.716697915757256,0.473314686579554,0,0,0.5290268405154,1.11598505450025,2.77305377178851,3.02838593486652,0.883164973845552,0.109265571963696,1.90047751517155,4.38551967890521,5.87878291584233,8.82191035534511,2.25636785363138,0.378893491091197,0.267964130156178,0.829169439458779,0.20686599172379,0,0.23806443146374,0,0.248298857183432,0.112131862580613,0.572824424503484,0.202117188958219,0.217716747896961,0,0.404112318087525,1.29099969706817,0.332660356546013,0.0814032686109745,0.106727345877715,0,0.718601616852695,2.34640942403454,0.244482888365733,0,0,0.402547587182052,0.320568492303233|short_description=p3@MDM2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=4193 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6973 | |||
|TSSclassifier=S | |||
|UniProt=A7UKX8,E7EMW5,A7UKY0,A7UKX7 | |||
|association_with_transcript=-80bp_to_ENST00000393415,ENST00000523991,ENST00000539479,ENST00000543323,uc001sun.3,uc009zqy.1,uc009zqz.2,uc009zra.2_5end | |||
|description=CAGE_peak_3_at_MDM2_5end | |||
|id=chr12:69202709..69202716,+ | |||
|ontology_enrichment_celltype=CL:0000048!1.36e-19!430;CL:0000034!6.96e-19!444;CL:0000723!2.14e-18!436;CL:0000144!2.94e-18!625;CL:0002371!1.92e-14!591;CL:0000003!2.83e-14!722;CL:0000548!9.99e-14!679;CL:0000004!9.99e-14!679;CL:0000255!9.99e-14!679;CL:0000012!3.82e-13!682;CL:0000055!2.94e-11!180;CL:0000222!5.81e-10!119;CL:0002320!1.06e-09!365;CL:0000134!1.08e-09!358;CL:0000192!5.44e-09!42;CL:0000514!5.44e-09!42;CL:0002057!1.20e-08!42;CL:0000359!1.79e-08!32;CL:0000839!1.94e-08!70;CL:0000680!4.19e-08!57;CL:0000056!4.19e-08!57;CL:0000355!4.19e-08!57;CL:0000219!5.74e-08!390;CL:0000766!7.28e-08!76;CL:0000187!9.74e-08!54;CL:0000393!1.03e-07!60;CL:0000211!1.03e-07!60;CL:0000557!3.09e-07!71;CL:0000860!4.37e-07!45;CL:0002009!4.95e-07!65;CL:0002194!6.22e-07!63;CL:0000576!6.22e-07!63;CL:0000040!6.22e-07!63;CL:0000559!6.22e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.53e-08;33!CL:0002057;1.53e-08;33!CL:0000473;2.64e-08;39!CL:0000234;2.64e-08;39!CL:0000359;7.29e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,3.24e-20,427;CL:0000034,9.23e-20,441;CL:0000723,3.02e-19,433;CL:0000134,2.99e-11,354;CL:0002320,3.92e-11,361;CL:0000839,2.37e-09,66;CL:0000473,3.02e-09,48;CL:0000234,3.02e-09,48;CL:0000766,6.64e-09,72;CL:0000219,1.13e-08,386;CL:0000359,3.23e-08,32;CL:0000860,3.86e-08,42;CL:0002057,3.86e-08,42;CL:0000192,4.07e-08,43;CL:0000514,4.07e-08,43;CL:0002194,5.92e-08,59;CL:0000576,5.92e-08,59;CL:0000040,5.92e-08,59;CL:0000559,5.92e-08,59;CL:0000557,7.85e-08,67;CL:0002009,8.49e-08,61;CL:0000222,1.74e-07,121 | |||
|ontology_enrichment_development_v019=CL:0002057;8.63e-07;42 | |||
|ontology_enrichment_disease=DOID:2394!1.36e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.55e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.97e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0003081!2.99e-13!216;UBERON:0002204!2.56e-12!167;UBERON:0004535!8.48e-11!110;UBERON:0001009!1.13e-10!113;UBERON:0000926!3.63e-10!448;UBERON:0004120!3.63e-10!448;UBERON:0006603!3.63e-10!448;UBERON:0002384!4.68e-10!375;UBERON:0002049!4.82e-10!79;UBERON:0007798!4.82e-10!79;UBERON:0001637!1.34e-09!42;UBERON:0003509!1.34e-09!42;UBERON:0004572!1.34e-09!42;UBERON:0000055!2.62e-09!69;UBERON:0001981!9.15e-09!60;UBERON:0007500!9.15e-09!60;UBERON:0004537!9.15e-09!60;UBERON:0006965!9.15e-09!60;UBERON:0004872!3.36e-08!84;UBERON:0002371!7.36e-08!80;UBERON:0002193!1.44e-07!112;UBERON:0004573!1.74e-07!33;UBERON:0004571!1.74e-07!33;UBERON:0001474!4.46e-07!86;UBERON:0004290!9.08e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.83e-07;42!UBERON:0003509;2.83e-07;42!UBERON:0004572;2.83e-07;42!UBERON:0004573;5.38e-07;33!UBERON:0004571;5.38e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.04e-14,315;UBERON:0004120,1.04e-14,315;UBERON:0006603,1.04e-14,315;UBERON:0003081,6.58e-13,203;UBERON:0002384,5.86e-12,371;UBERON:0002204,1.39e-11,167;UBERON:0004535,5.65e-10,109;UBERON:0001637,1.01e-09,42;UBERON:0003509,1.01e-09,42;UBERON:0004572,1.01e-09,42;UBERON:0001009,1.06e-09,112;UBERON:0002049,4.22e-09,78;UBERON:0007798,4.22e-09,78;UBERON:0000055,1.53e-08,68;UBERON:0002371,2.57e-08,76;UBERON:0007500,3.99e-08,59;UBERON:0001981,3.99e-08,59;UBERON:0004537,3.99e-08,59;UBERON:0006965,3.99e-08,59;UBERON:0004573,1.20e-07,33;UBERON:0004571,1.20e-07,33;UBERON:0001474,1.43e-07,82;UBERON:0004872,2.00e-07,83;UBERON:0002193,2.26e-07,108;UBERON:0002390,4.45e-07,98;UBERON:0003061,4.45e-07,98;UBERON:0001434,6.55e-07,100;UBERON:0004765,7.72e-07,90 | |||
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| |||
|short_description=p3@MDM2 | |||
}} |
Revision as of 00:08, 11 September 2013
Short description: | p3@MDM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_MDM2_5end |
Coexpression cluster: | NA |
Association with transcript: | -80bp_to_ENST00000393415, ENST00000523991, ENST00000539479, ENST00000543323, uc001sun.3, uc009zqy.1, uc009zqz.2, uc009zra.2_5end |
EntrezGene: | MDM2 |
HGNC: | 6973 |
UniProt: | A7UKX8E7EMW5A7UKY0A7UKX7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 3.24e-20 | 427 |
stem cell | 9.23e-20 | 441 |
somatic stem cell | 3.02e-19 | 433 |
mesenchymal cell | 2.99e-11 | 354 |
connective tissue cell | 3.92e-11 | 361 |
myeloid lineage restricted progenitor cell | 2.37e-09 | 66 |
defensive cell | 3.02e-09 | 48 |
phagocyte | 3.02e-09 | 48 |
myeloid leukocyte | 6.64e-09 | 72 |
motile cell | 1.13e-08 | 386 |
vascular associated smooth muscle cell | 3.23e-08 | 32 |
classical monocyte | 3.86e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.86e-08 | 42 |
smooth muscle cell | 4.07e-08 | 43 |
smooth muscle myoblast | 4.07e-08 | 43 |
monopoietic cell | 5.92e-08 | 59 |
monocyte | 5.92e-08 | 59 |
monoblast | 5.92e-08 | 59 |
promonocyte | 5.92e-08 | 59 |
granulocyte monocyte progenitor cell | 7.85e-08 | 67 |
macrophage dendritic cell progenitor | 8.49e-08 | 61 |
mesodermal cell | 1.74e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.04e-14 | 315 |
mesoderm-derived structure | 1.04e-14 | 315 |
presumptive mesoderm | 1.04e-14 | 315 |
lateral plate mesoderm | 6.58e-13 | 203 |
connective tissue | 5.86e-12 | 371 |
musculoskeletal system | 1.39e-11 | 167 |
cardiovascular system | 5.65e-10 | 109 |
artery | 1.01e-09 | 42 |
arterial blood vessel | 1.01e-09 | 42 |
arterial system | 1.01e-09 | 42 |
circulatory system | 1.06e-09 | 112 |
vasculature | 4.22e-09 | 78 |
vascular system | 4.22e-09 | 78 |
vessel | 1.53e-08 | 68 |
bone marrow | 2.57e-08 | 76 |
epithelial tube open at both ends | 3.99e-08 | 59 |
blood vessel | 3.99e-08 | 59 |
blood vasculature | 3.99e-08 | 59 |
vascular cord | 3.99e-08 | 59 |
systemic artery | 1.20e-07 | 33 |
systemic arterial system | 1.20e-07 | 33 |
bone element | 1.43e-07 | 82 |
splanchnic layer of lateral plate mesoderm | 2.00e-07 | 83 |
hemolymphoid system | 2.26e-07 | 108 |
hematopoietic system | 4.45e-07 | 98 |
blood island | 4.45e-07 | 98 |
skeletal system | 6.55e-07 | 100 |
skeletal element | 7.72e-07 | 90 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.97e-09 | 14 |
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