FFCP PHASE1:Hg19::chr12:47472684..47472703,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=347902|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=24073|TSSclassifier=S|UniProt=Q86SJ2|association_with_transcript=81bp_to_AY237005_5end|coexpression_cluster_id=C1169|description=CAGE_peak_12_at_AMIGO2_5end|id=chr12:47472684..47472703,-|ontology_enrichment_celltype=CL:0000066!2.85e-10!254;CL:0000244!2.43e-07!4;CL:0000731!2.43e-07!4;CL:0002076!3.68e-07!43|ontology_enrichment_celltype_v019=CL:0000244;3.43e-32;4!CL:0000731;3.43e-32;4!CL:0002621;1.87e-11;3!CL:0002568;1.37e-09;1!CL:1001319;3.25e-09;1!CL:1000600;3.25e-09;1|ontology_enrichment_celltype_v019_2=CL:0000244,4.05e-32,4;CL:0000731,4.05e-32,4;CL:0002621,2.19e-11,3;CL:0002568,1.32e-09,1;CL:1001319,3.53e-09,1;CL:1000600,3.53e-09,1|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:1749!2.51e-09!14;DOID:14566!4.49e-08!239;DOID:120!1.32e-07!27;DOID:162!1.35e-07!235;DOID:305!6.85e-07!106;DOID:193!8.03e-07!29|ontology_enrichment_disease_v019=DOID:3571;3.25e-09;1|ontology_enrichment_disease_v019_2=DOID:3571,5.72e-09,1|ontology_enrichment_uberon=UBERON:0000365!9.72e-09!5;UBERON:0005910!3.89e-07!6;UBERON:0000466!5.31e-07!126;UBERON:0005911!6.00e-07!82|ontology_enrichment_uberon_v019=UBERON:0000365;1.23e-39;5!UBERON:0005910;4.90e-33;6!UBERON:0000486;1.41e-31;12!UBERON:0006554;4.55e-16;30!UBERON:0001008;4.55e-16;30!UBERON:0001949;1.87e-11;3!UBERON:0003350;2.02e-09;8!UBERON:0004645;3.25e-09;1!UBERON:0001256;3.25e-09;1!UBERON:0001259;3.25e-09;1!UBERON:0005911;4.25e-08;36|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.58e-39,5;UBERON:0005910,6.02e-33,6;UBERON:0006554,1.73e-12,47;UBERON:0001008,3.36e-12,48;UBERON:0001949,2.19e-11,3;UBERON:0003350,2.27e-09,8;UBERON:0004645,3.53e-09,1;UBERON:0001256,3.53e-09,1;UBERON:0001259,3.53e-09,1;UBERON:0005911,4.43e-08,82|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0.534880391567015,0.144824403882799,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0.179389635688862,0.213557388818567,0.211931901159562,0,0,0.515281080091258,0,0,0.0974370051611986,0,0,0.161646056818812,0,0.201504196455281,0,1.15956511897978,1.63647672354501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,2.01578553838631,0.141775097242386,0.626909658919938,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19761916788222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74306691720059,0.199945982364114,0,0,0,0.958499421966331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0.321707842287215,0,0,0,0,0,0,0,2.00506470303285,0,0,0,0,0,3.85076685522074,0,0,2.63879072232189,0,0,0,0,0.541892875087706,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.826424576804891,1.15314040419064,0.765676274967505,0,0,0,0,0.308033580176089,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0,1.29151611801369,1.68471475667626,1.33029046061003,12.6347870113828,0,0,0,0,0,0,0,0,1.28188885352968,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445234820091624,0,0,0,0,0,0.613612095012929,0,0,2.24670877868317,0.358042349351218,0,0.295930216910801,0,0,0,0.0927680981618513,1.99613798001194,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.307801034015188,0.113942055847001,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.843992258112108,1.63232808159148,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664653872707185,0.330991955875499,0.313932918407225,0,0.569219092059585,0,0,0.195984794828755,0.0870592065804026,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,2.05562886970126,0.19871461170299,0.126621591911757,0,0.561111741760736,0,0.39961921916426,0.288180834308212,0,0,0.14405479798815,0,0,0.271808412147228,0.104602846312333,0.101998217636322,0,0.600420288709789,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,1.08089965062721,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767660789277781,0,0,0,0,1.72844298240254,0,0,0.328370082997356,0,0,0,0,0.129282956361551,0.13223260174269,0.855434189421647,0,0,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,0,0.886068179966986,0,0,0,0,0.124192805882767,0,0.124980407962107,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0.63718706865481,3.59842489730884,0.465788870628778,0,0,0,0.901545653983311,0,0.406870733204662,0,0.966695013382396,1.39210127963548,0.398095888698616,0,0,0,0,0,0,0,0.226705925512272,0.231522474323834,0.734210113519403,0.179088841081487,0,0.219284049578707,0.176689145945881,0,0,0.512483037175893,0,0,0,0,0,0,0,0,0.845248493434508,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0.0691572524642179,0,0,1.86480665151949,0.235939446695481,0,0.346576998451015,0.762764190934334,0.690359926060101,0,0,0.40341013740704,0,0,0,0.591424344868181,0.0675375846183947,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0.342976018874837,0,0,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0.142953088353313,0,0.464965701472501,0,0,0,0,0,0,0.236664001461131,0,0,0.4582137370881,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0.356760272332706,0,0,0.150962843566674,0,0,0,0,0.471353094203252,0,0,0.4226557275834,0,0,0,0,0,0.352894871715692,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0,0,0.112131862580613,0,0,0,0,0,0,0,1.38385556638657,0,0,7.5453169769533,0,0.122241444182866,0,0,0,0|short_description=p12@AMIGO2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=347902 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=24073 | |||
|TSSclassifier=S | |||
|UniProt=Q86SJ2 | |||
|association_with_transcript=81bp_to_AY237005_5end | |||
|coexpression_cluster_id=C1169 | |||
|description=CAGE_peak_12_at_AMIGO2_5end | |||
|id=chr12:47472684..47472703,- | |||
|ontology_enrichment_celltype=CL:0000066!2.85e-10!254;CL:0000244!2.43e-07!4;CL:0000731!2.43e-07!4;CL:0002076!3.68e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000244;3.43e-32;4!CL:0000731;3.43e-32;4!CL:0002621;1.87e-11;3!CL:0002568;1.37e-09;1!CL:1001319;3.25e-09;1!CL:1000600;3.25e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,4.05e-32,4;CL:0000731,4.05e-32,4;CL:0002621,2.19e-11,3;CL:0002568,1.32e-09,1;CL:1001319,3.53e-09,1;CL:1000600,3.53e-09,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!2.51e-09!14;DOID:14566!4.49e-08!239;DOID:120!1.32e-07!27;DOID:162!1.35e-07!235;DOID:305!6.85e-07!106;DOID:193!8.03e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:3571;3.25e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,5.72e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000365!9.72e-09!5;UBERON:0005910!3.89e-07!6;UBERON:0000466!5.31e-07!126;UBERON:0005911!6.00e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;1.23e-39;5!UBERON:0005910;4.90e-33;6!UBERON:0000486;1.41e-31;12!UBERON:0006554;4.55e-16;30!UBERON:0001008;4.55e-16;30!UBERON:0001949;1.87e-11;3!UBERON:0003350;2.02e-09;8!UBERON:0004645;3.25e-09;1!UBERON:0001256;3.25e-09;1!UBERON:0001259;3.25e-09;1!UBERON:0005911;4.25e-08;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.58e-39,5;UBERON:0005910,6.02e-33,6;UBERON:0006554,1.73e-12,47;UBERON:0001008,3.36e-12,48;UBERON:0001949,2.19e-11,3;UBERON:0003350,2.27e-09,8;UBERON:0004645,3.53e-09,1;UBERON:0001256,3.53e-09,1;UBERON:0001259,3.53e-09,1;UBERON:0005911,4.43e-08,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0.534880391567015,0.144824403882799,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0.179389635688862,0.213557388818567,0.211931901159562,0,0,0.515281080091258,0,0,0.0974370051611986,0,0,0.161646056818812,0,0.201504196455281,0,1.15956511897978,1.63647672354501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,2.01578553838631,0.141775097242386,0.626909658919938,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19761916788222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74306691720059,0.199945982364114,0,0,0,0.958499421966331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0.321707842287215,0,0,0,0,0,0,0,2.00506470303285,0,0,0,0,0,3.85076685522074,0,0,2.63879072232189,0,0,0,0,0.541892875087706,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.826424576804891,1.15314040419064,0.765676274967505,0,0,0,0,0.308033580176089,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0,1.29151611801369,1.68471475667626,1.33029046061003,12.6347870113828,0,0,0,0,0,0,0,0,1.28188885352968,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445234820091624,0,0,0,0,0,0.613612095012929,0,0,2.24670877868317,0.358042349351218,0,0.295930216910801,0,0,0,0.0927680981618513,1.99613798001194,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.307801034015188,0.113942055847001,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.843992258112108,1.63232808159148,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664653872707185,0.330991955875499,0.313932918407225,0,0.569219092059585,0,0,0.195984794828755,0.0870592065804026,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,2.05562886970126,0.19871461170299,0.126621591911757,0,0.561111741760736,0,0.39961921916426,0.288180834308212,0,0,0.14405479798815,0,0,0.271808412147228,0.104602846312333,0.101998217636322,0,0.600420288709789,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,1.08089965062721,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767660789277781,0,0,0,0,1.72844298240254,0,0,0.328370082997356,0,0,0,0,0.129282956361551,0.13223260174269,0.855434189421647,0,0,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,0,0.886068179966986,0,0,0,0,0.124192805882767,0,0.124980407962107,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0.63718706865481,3.59842489730884,0.465788870628778,0,0,0,0.901545653983311,0,0.406870733204662,0,0.966695013382396,1.39210127963548,0.398095888698616,0,0,0,0,0,0,0,0.226705925512272,0.231522474323834,0.734210113519403,0.179088841081487,0,0.219284049578707,0.176689145945881,0,0,0.512483037175893,0,0,0,0,0,0,0,0,0.845248493434508,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0.0691572524642179,0,0,1.86480665151949,0.235939446695481,0,0.346576998451015,0.762764190934334,0.690359926060101,0,0,0.40341013740704,0,0,0,0.591424344868181,0.0675375846183947,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0.342976018874837,0,0,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0.142953088353313,0,0.464965701472501,0,0,0,0,0,0,0.236664001461131,0,0,0.4582137370881,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0.356760272332706,0,0,0.150962843566674,0,0,0,0,0.471353094203252,0,0,0.4226557275834,0,0,0,0,0,0.352894871715692,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0,0,0.112131862580613,0,0,0,0,0,0,0,1.38385556638657,0,0,7.5453169769533,0,0.122241444182866,0,0,0,0 | |||
|short_description=p12@AMIGO2 | |||
}} |
Revision as of 22:45, 10 September 2013
Short description: | p12@AMIGO2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_AMIGO2_5end |
Coexpression cluster: | C1169_Urothelial_meningioma_medulloblastoma_Prostate_fibrosarcoma_Anulus_Nucleus |
Association with transcript: | 81bp_to_AY237005_5end |
EntrezGene: | AMIGO2 |
HGNC: | 24073 |
UniProt: | Q86SJ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 4.05e-32 | 4 |
urothelial cell | 4.05e-32 | 4 |
gingival epithelial cell | 2.19e-11 | 3 |
mesenchymal stem cell of Wharton's jelly | 1.32e-09 | 1 |
bladder cell | 3.53e-09 | 1 |
lower urinary tract cell | 3.53e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
urothelium | 1.58e-39 | 5 |
transitional epithelium | 6.02e-33 | 6 |
urinary system structure | 1.73e-12 | 47 |
renal system | 3.36e-12 | 48 |
gingival epithelium | 2.19e-11 | 3 |
epithelium of mucosa | 2.27e-09 | 8 |
urinary bladder urothelium | 3.53e-09 | 1 |
wall of urinary bladder | 3.53e-09 | 1 |
mucosa of urinary bladder | 3.53e-09 | 1 |
endo-epithelium | 4.43e-08 | 82 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 5.72e-09 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.