FFCP PHASE1:Hg19::chr12:13349524..13349549,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2012|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3333|TSSclassifier=S|UniProt=P54849|association_with_transcript=-52bp_to_NM_001423,uc001rbr.2,uc009zhy.2,uc010shr.1_5end|coexpression_cluster_id=C7|description=CAGE_peak_3_at_EMP1_5end|id=chr12:13349524..13349549,+|ontology_enrichment_celltype=CL:0000557!1.47e-15!71;CL:0002009!1.56e-15!65;CL:0002057!5.14e-15!42;CL:0002194!1.73e-14!63;CL:0000576!1.73e-14!63;CL:0000040!1.73e-14!63;CL:0000559!1.73e-14!63;CL:0000839!4.77e-14!70;CL:0000766!5.61e-14!76;CL:0000860!5.22e-13!45;CL:0002139!3.31e-09!24;CL:0000115!1.23e-07!35;CL:0002371!2.24e-07!591;CL:0000071!3.61e-07!18;CL:0002546!3.61e-07!18|ontology_enrichment_celltype_v019=CL:0000473;8.93e-62;39!CL:0000234;8.93e-62;39!CL:0000860;1.14e-58;33!CL:0002057;1.14e-58;33!CL:0000576;1.90e-26;48!CL:0000766;1.08e-22;69!CL:0000235;1.13e-16;6!CL:0000763;1.46e-11;100|ontology_enrichment_celltype_v019_2=CL:0000473,4.51e-63,48;CL:0000234,4.51e-63,48;CL:0000557,1.87e-49,67;CL:0002009,2.23e-49,61;CL:0000860,9.02e-49,42;CL:0002057,9.02e-49,42;CL:0002194,2.36e-48,59;CL:0000576,2.36e-48,59;CL:0000040,2.36e-48,59;CL:0000559,2.36e-48,59;CL:0000766,1.29e-47,72;CL:0000839,1.64e-47,66;CL:0000763,6.21e-30,108;CL:0000049,6.21e-30,108;CL:0002031,5.27e-23,120;CL:0000738,1.56e-21,136;CL:0002087,4.13e-20,115;CL:0000235,8.12e-17,6;CL:0002032,1.54e-16,161;CL:0000837,1.54e-16,161;CL:0000037,2.06e-15,168;CL:0000988,4.22e-14,177;CL:0000134,2.72e-09,354;CL:0002320,7.31e-09,361;CL:0000219,7.02e-08,386;CL:0000048,1.87e-07,427;CL:0000723,3.64e-07,433;CL:0000034,8.54e-07,441|ontology_enrichment_development_v019=CL:0002057;3.40e-37;42!CL:0000049;6.47e-10;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.28e-14!80;UBERON:0001474!3.39e-14!86;UBERON:0004765!1.57e-12!101;UBERON:0001434!1.57e-12!101;UBERON:0002405!6.87e-10!115;UBERON:0000926!1.55e-09!448;UBERON:0004120!1.55e-09!448;UBERON:0006603!1.55e-09!448;UBERON:0002193!2.17e-09!112;UBERON:0002204!7.58e-09!167;UBERON:0002390!1.51e-08!102;UBERON:0003061!1.51e-08!102;UBERON:0003081!4.42e-08!216;UBERON:0000487!1.27e-07!22;UBERON:0001986!3.61e-07!18;UBERON:0004638!3.61e-07!18;UBERON:0004852!3.61e-07!18|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.93e-45,76;UBERON:0001474,1.02e-40,82;UBERON:0002405,1.58e-36,93;UBERON:0004765,3.79e-36,90;UBERON:0002390,2.54e-32,98;UBERON:0003061,2.54e-32,98;UBERON:0001434,1.84e-31,100;UBERON:0002193,6.21e-30,108;UBERON:0002204,9.14e-19,167;UBERON:0003081,2.92e-18,203;UBERON:0000926,1.44e-10,315;UBERON:0004120,1.44e-10,315;UBERON:0006603,1.44e-10,315;UBERON:0002384,7.23e-09,371|phase1_expression=0.54503513781167,0,0.422863212287913,0,0,0,0,0,0.261185628199839,0.245733936501509,0,1.09220686065086,0,0,0,2.6893005858071,0.602694528023977,0,0,0.246242116153576,0.204000691244253,0,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0,1.18009283054671,0.383829398097213,1.08371286321253,0,0,0,0,0,0.587200878669695,0,0,0.434021741431704,0,0.32389366601898,0.257575567634187,1.89017710413434,3.40088349319928,4.12392904019288,7.67015821788759,4.52284676824008,13.6270803193846,9.49384894663097,5.12321413058201,9.93225365532058,5.5159308917859,3.87290810150296,4.06279459783025,3.57660445130949,2.18324920046277,2.69668181334102,5.50951006267625,0.641858054152187,3.83602275479425,2.63881040149373,2.59302754908121,4.68847225585964,2.61188314765726,1.70215567407342,1.24564449799115,16.8336605722018,10.9511412868242,13.9000860611275,2.42159801053347,3.31449872388808,2.53169909952708,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.383587685530591,0,0,0,0,0,0.0945348171640679,0.443458794925128,0.087834785693126,0.0654895377488563,0,0,0,0,0.398873881556595,0,0,0,0.198762407366705,0.860234595106124,0.694281003215189,1.13061588384802,0.419499436209906,0.825354125820202,0.417989933073621,0.258416759169329,0.35576626268671,1.00416183829401,0,1.52054421143703,0.488124115096339,1.10298924103761,0.81014194788176,0.625098097988558,0.44905874525234,0.337834441449967,0,0.949265659568129,0.732806975721629,0,0,0,0,0.25326102332916,0,0,0,0,0,0.24666754841716,0,0.134710672069688,0.163461903113459,0,0,0,0.312160076830321,0.570471821544449,0.448346041655403,0.704606991862589,1.13311061057692,0.702254033511242,0.408308342509787,0.122834317311768,0,2.37600571456411,0.741800787835671,0,0,0.673344455816265,0.375355559615893,0.554128230968366,0,0,0.600952235626387,0.340296549480063,0.538168907066586,0.213557388818567,0,0.300091096084402,0.103052529238439,0.257640540045629,0,0.168776332241266,0,0.252433774244115,0.0920498986422993,0,0,0.10075209822764,0,0.193260853163297,0,0,0,0,0,0.10366105501537,0,0,0,0,1.38134921352481,0.464367928031979,0,0.118306800039844,0,0,0,0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426467963801962,0,0,0,0,0.0636471582781649,0.202117188958219,0.653150243690884,1.36893320434112,0.134704106029175,0.215166616178029,0.665320713092027,0,0.426909383510862,0,0,0,0,0.406896178315738,0,0,0|short_description=p3@EMP1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=2012 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3333 | |||
|TSSclassifier=S | |||
|UniProt=P54849 | |||
|association_with_transcript=-52bp_to_NM_001423,uc001rbr.2,uc009zhy.2,uc010shr.1_5end | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_3_at_EMP1_5end | |||
|id=chr12:13349524..13349549,+ | |||
|ontology_enrichment_celltype=CL:0000557!1.47e-15!71;CL:0002009!1.56e-15!65;CL:0002057!5.14e-15!42;CL:0002194!1.73e-14!63;CL:0000576!1.73e-14!63;CL:0000040!1.73e-14!63;CL:0000559!1.73e-14!63;CL:0000839!4.77e-14!70;CL:0000766!5.61e-14!76;CL:0000860!5.22e-13!45;CL:0002139!3.31e-09!24;CL:0000115!1.23e-07!35;CL:0002371!2.24e-07!591;CL:0000071!3.61e-07!18;CL:0002546!3.61e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000473;8.93e-62;39!CL:0000234;8.93e-62;39!CL:0000860;1.14e-58;33!CL:0002057;1.14e-58;33!CL:0000576;1.90e-26;48!CL:0000766;1.08e-22;69!CL:0000235;1.13e-16;6!CL:0000763;1.46e-11;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.51e-63,48;CL:0000234,4.51e-63,48;CL:0000557,1.87e-49,67;CL:0002009,2.23e-49,61;CL:0000860,9.02e-49,42;CL:0002057,9.02e-49,42;CL:0002194,2.36e-48,59;CL:0000576,2.36e-48,59;CL:0000040,2.36e-48,59;CL:0000559,2.36e-48,59;CL:0000766,1.29e-47,72;CL:0000839,1.64e-47,66;CL:0000763,6.21e-30,108;CL:0000049,6.21e-30,108;CL:0002031,5.27e-23,120;CL:0000738,1.56e-21,136;CL:0002087,4.13e-20,115;CL:0000235,8.12e-17,6;CL:0002032,1.54e-16,161;CL:0000837,1.54e-16,161;CL:0000037,2.06e-15,168;CL:0000988,4.22e-14,177;CL:0000134,2.72e-09,354;CL:0002320,7.31e-09,361;CL:0000219,7.02e-08,386;CL:0000048,1.87e-07,427;CL:0000723,3.64e-07,433;CL:0000034,8.54e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;3.40e-37;42!CL:0000049;6.47e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.28e-14!80;UBERON:0001474!3.39e-14!86;UBERON:0004765!1.57e-12!101;UBERON:0001434!1.57e-12!101;UBERON:0002405!6.87e-10!115;UBERON:0000926!1.55e-09!448;UBERON:0004120!1.55e-09!448;UBERON:0006603!1.55e-09!448;UBERON:0002193!2.17e-09!112;UBERON:0002204!7.58e-09!167;UBERON:0002390!1.51e-08!102;UBERON:0003061!1.51e-08!102;UBERON:0003081!4.42e-08!216;UBERON:0000487!1.27e-07!22;UBERON:0001986!3.61e-07!18;UBERON:0004638!3.61e-07!18;UBERON:0004852!3.61e-07!18 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.93e-45,76;UBERON:0001474,1.02e-40,82;UBERON:0002405,1.58e-36,93;UBERON:0004765,3.79e-36,90;UBERON:0002390,2.54e-32,98;UBERON:0003061,2.54e-32,98;UBERON:0001434,1.84e-31,100;UBERON:0002193,6.21e-30,108;UBERON:0002204,9.14e-19,167;UBERON:0003081,2.92e-18,203;UBERON:0000926,1.44e-10,315;UBERON:0004120,1.44e-10,315;UBERON:0006603,1.44e-10,315;UBERON:0002384,7.23e-09,371 | |||
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| |||
|short_description=p3@EMP1 | |||
}} |
Revision as of 21:51, 10 September 2013
Short description: | p3@EMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_EMP1_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | -52bp_to_NM_001423, uc001rbr.2, uc009zhy.2, uc010shr.1_5end |
EntrezGene: | EMP1 |
HGNC: | 3333 |
UniProt: | P54849 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.51e-63 | 48 |
phagocyte | 4.51e-63 | 48 |
granulocyte monocyte progenitor cell | 1.87e-49 | 67 |
macrophage dendritic cell progenitor | 2.23e-49 | 61 |
classical monocyte | 9.02e-49 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.02e-49 | 42 |
monopoietic cell | 2.36e-48 | 59 |
monocyte | 2.36e-48 | 59 |
monoblast | 2.36e-48 | 59 |
promonocyte | 2.36e-48 | 59 |
myeloid leukocyte | 1.29e-47 | 72 |
myeloid lineage restricted progenitor cell | 1.64e-47 | 66 |
myeloid cell | 6.21e-30 | 108 |
common myeloid progenitor | 6.21e-30 | 108 |
hematopoietic lineage restricted progenitor cell | 5.27e-23 | 120 |
leukocyte | 1.56e-21 | 136 |
nongranular leukocyte | 4.13e-20 | 115 |
macrophage | 8.12e-17 | 6 |
hematopoietic oligopotent progenitor cell | 1.54e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.54e-16 | 161 |
hematopoietic stem cell | 2.06e-15 | 168 |
hematopoietic cell | 4.22e-14 | 177 |
mesenchymal cell | 2.72e-09 | 354 |
connective tissue cell | 7.31e-09 | 361 |
motile cell | 7.02e-08 | 386 |
multi fate stem cell | 1.87e-07 | 427 |
somatic stem cell | 3.64e-07 | 433 |
stem cell | 8.54e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.93e-45 | 76 |
bone element | 1.02e-40 | 82 |
immune system | 1.58e-36 | 93 |
skeletal element | 3.79e-36 | 90 |
hematopoietic system | 2.54e-32 | 98 |
blood island | 2.54e-32 | 98 |
skeletal system | 1.84e-31 | 100 |
hemolymphoid system | 6.21e-30 | 108 |
musculoskeletal system | 9.14e-19 | 167 |
lateral plate mesoderm | 2.92e-18 | 203 |
mesoderm | 1.44e-10 | 315 |
mesoderm-derived structure | 1.44e-10 | 315 |
presumptive mesoderm | 1.44e-10 | 315 |
connective tissue | 7.23e-09 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.