FFCP PHASE1:Hg19::chr11:110167667..110167693,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5962|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9944|TSSclassifier=W|UniProt=P35241|association_with_transcript=-220bp_to_ENST00000343115_5end|description=CAGE_peak_6_at_RDX_5end|id=chr11:110167667..110167693,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000047;2.36e-07;2|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006241;4.79e-11;3!UBERON:0003057;4.79e-11;3!UBERON:0008947;1.66e-07;29|ontology_enrichment_disease=DOID:0050687!3.88e-07!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000924!1.19e-14!173;UBERON:0006601!1.19e-14!173;UBERON:0005743!6.02e-14!86;UBERON:0000073!6.09e-14!94;UBERON:0001016!6.09e-14!94;UBERON:0001017!1.98e-13!82;UBERON:0004121!3.42e-13!169;UBERON:0001049!1.37e-12!57;UBERON:0005068!1.37e-12!57;UBERON:0006241!1.37e-12!57;UBERON:0007135!1.37e-12!57;UBERON:0000468!5.57e-12!659;UBERON:0002346!1.38e-11!90;UBERON:0000153!1.16e-10!129;UBERON:0007811!1.16e-10!129;UBERON:0000033!2.15e-10!123;UBERON:0003075!4.90e-10!86;UBERON:0007284!4.90e-10!86;UBERON:0002616!5.22e-10!59;UBERON:0000955!2.64e-09!69;UBERON:0006238!2.64e-09!69;UBERON:0002780!3.30e-09!41;UBERON:0001890!3.30e-09!41;UBERON:0006240!3.30e-09!41;UBERON:0000064!4.05e-09!219;UBERON:0000922!5.47e-09!612;UBERON:0003080!1.04e-08!42;UBERON:0003056!1.97e-08!61;UBERON:0000467!2.84e-08!625;UBERON:0000923!2.93e-08!604;UBERON:0005291!2.93e-08!604;UBERON:0006598!2.93e-08!604;UBERON:0002532!2.93e-08!604;UBERON:0001893!3.05e-08!34;UBERON:0002791!3.47e-08!33;UBERON:0000062!3.80e-08!511;UBERON:0000480!3.86e-08!626;UBERON:0002050!3.98e-08!605;UBERON:0005423!3.98e-08!605;UBERON:0002020!7.79e-08!34;UBERON:0003528!7.79e-08!34;UBERON:0001737!1.32e-07!9;UBERON:0001869!3.28e-07!32|ontology_enrichment_uberon_v019=UBERON:0001737;7.92e-17;9!UBERON:0001557;7.92e-17;9!UBERON:0002240;4.79e-11;3!UBERON:0005174;4.79e-11;3!UBERON:0001137;4.79e-11;3!UBERON:0002346;1.54e-08;4!UBERON:0000923;1.54e-08;4!UBERON:0010316;1.54e-08;4!UBERON:0005291;1.54e-08;4!UBERON:0001897;8.92e-08;2!UBERON:0010225;8.92e-08;2!UBERON:0002050;6.78e-07;5!UBERON:0005423;6.78e-07;5!UBERON:0002780;6.80e-07;41!UBERON:0001890;6.80e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.50e-16,9;UBERON:0002240,2.06e-11,3;UBERON:0005174,2.06e-11,3;UBERON:0001137,2.06e-11,3;UBERON:0001017,4.15e-11,81;UBERON:0001016,1.15e-10,89;UBERON:0001049,8.65e-10,56;UBERON:0005068,8.65e-10,56;UBERON:0006241,8.65e-10,56;UBERON:0007135,8.65e-10,56;UBERON:0002346,3.18e-09,86;UBERON:0011216,5.55e-09,223;UBERON:0001897,4.83e-08,2;UBERON:0010225,4.83e-08,2;UBERON:0004121,7.04e-08,171;UBERON:0000924,7.04e-08,171;UBERON:0006601,7.04e-08,171;UBERON:0002780,2.57e-07,41;UBERON:0001890,2.57e-07,41;UBERON:0003080,2.57e-07,41;UBERON:0006240,2.57e-07,41;UBERON:0001557,3.26e-07,19|phase1_expression=0.363356758541113,0.642301571672949,0.422863212287913,0,0,0,0,0,0,0.491467873003018,0,0.218441372130172,0.263766978228454,0.495065411840187,0.331397375727916,0,0,0,0,0.61560529038394,0.204000691244253,0,0.286235987131057,1.23186982565596,0.627713197974014,0,0,0.0787107813136792,0,0,0,0,0,0.739508020333575,0,0,0,0.553995408531877,0.401088894940283,0,0,0.32389366601898,0,0,0.377875943688809,0.242584061187816,0.232429036905685,0.411167888021826,0.929119112685311,0,0,0,1.03423704220986,0,0,0.188242339542605,0.545812300115692,0,0.306083892370903,0.641858054152187,0,0,0,0,0.290209238628584,0,0.622822248995575,0,0,0,0.605399502633369,1.10483290796269,1.26584954976354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0,0.434539556882471,0,0,0.472674085820339,0,0.263504357079378,0.130979075497713,0.364295288292542,0,0,0,0.26591592103773,0,0,0,0,0,0.347140501607594,0,0,0,0.208994966536811,0.516833518338658,0.71153252537342,0,0,0,0.488124115096339,0.367663080345869,0,1.07159673940896,0.44905874525234,0.675668882899933,0,0.949265659568129,0,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0.622422070799533,0.134710672069688,0.490385709340376,0.151357427644931,1.72852777344,0,0,0,0.149448680551801,0.352303495931295,0.647491777472526,0.421352420106746,0,0.245668634623536,0.413303124703062,0,0,0,0,0.841680569770331,0.375355559615893,0.277064115484183,0.438977620880838,0,0,0.113432183160021,0.179389635688862,0,0,0.300091096084402,0,0.257640540045629,0,0.337552664482532,0.389748020644795,0.252433774244115,0.0920498986422993,0,0,0.503760491138201,0,0.57978255948989,1.63647672354501,0.573609190778008,0,0.530119073285941,0.116193942869518,0.621966330092223,0.504641701751257,0.72995471815166,0,0,0,0,0,1.30137480043828,1.01150814046861,1.44606617930089,0.882351781859152,1.08939722046203,1.18635309555548,0.943819157121151,1.17732879075208,2.30848294167834,0,0,0.4115740113314,0,0,0,0,0,0.491953754172454,0.171567810298526,0.219500570817251,0,0.603173834469785,0.740707561268237,0,1.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5962 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9944 | |||
|TSSclassifier=W | |||
|UniProt=P35241 | |||
|association_with_transcript=-220bp_to_ENST00000343115_5end | |||
|description=CAGE_peak_6_at_RDX_5end | |||
|id=chr11:110167667..110167693,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;2.36e-07;2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;4.79e-11;3!UBERON:0003057;4.79e-11;3!UBERON:0008947;1.66e-07;29 | |||
|ontology_enrichment_disease=DOID:0050687!3.88e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000924!1.19e-14!173;UBERON:0006601!1.19e-14!173;UBERON:0005743!6.02e-14!86;UBERON:0000073!6.09e-14!94;UBERON:0001016!6.09e-14!94;UBERON:0001017!1.98e-13!82;UBERON:0004121!3.42e-13!169;UBERON:0001049!1.37e-12!57;UBERON:0005068!1.37e-12!57;UBERON:0006241!1.37e-12!57;UBERON:0007135!1.37e-12!57;UBERON:0000468!5.57e-12!659;UBERON:0002346!1.38e-11!90;UBERON:0000153!1.16e-10!129;UBERON:0007811!1.16e-10!129;UBERON:0000033!2.15e-10!123;UBERON:0003075!4.90e-10!86;UBERON:0007284!4.90e-10!86;UBERON:0002616!5.22e-10!59;UBERON:0000955!2.64e-09!69;UBERON:0006238!2.64e-09!69;UBERON:0002780!3.30e-09!41;UBERON:0001890!3.30e-09!41;UBERON:0006240!3.30e-09!41;UBERON:0000064!4.05e-09!219;UBERON:0000922!5.47e-09!612;UBERON:0003080!1.04e-08!42;UBERON:0003056!1.97e-08!61;UBERON:0000467!2.84e-08!625;UBERON:0000923!2.93e-08!604;UBERON:0005291!2.93e-08!604;UBERON:0006598!2.93e-08!604;UBERON:0002532!2.93e-08!604;UBERON:0001893!3.05e-08!34;UBERON:0002791!3.47e-08!33;UBERON:0000062!3.80e-08!511;UBERON:0000480!3.86e-08!626;UBERON:0002050!3.98e-08!605;UBERON:0005423!3.98e-08!605;UBERON:0002020!7.79e-08!34;UBERON:0003528!7.79e-08!34;UBERON:0001737!1.32e-07!9;UBERON:0001869!3.28e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;7.92e-17;9!UBERON:0001557;7.92e-17;9!UBERON:0002240;4.79e-11;3!UBERON:0005174;4.79e-11;3!UBERON:0001137;4.79e-11;3!UBERON:0002346;1.54e-08;4!UBERON:0000923;1.54e-08;4!UBERON:0010316;1.54e-08;4!UBERON:0005291;1.54e-08;4!UBERON:0001897;8.92e-08;2!UBERON:0010225;8.92e-08;2!UBERON:0002050;6.78e-07;5!UBERON:0005423;6.78e-07;5!UBERON:0002780;6.80e-07;41!UBERON:0001890;6.80e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.50e-16,9;UBERON:0002240,2.06e-11,3;UBERON:0005174,2.06e-11,3;UBERON:0001137,2.06e-11,3;UBERON:0001017,4.15e-11,81;UBERON:0001016,1.15e-10,89;UBERON:0001049,8.65e-10,56;UBERON:0005068,8.65e-10,56;UBERON:0006241,8.65e-10,56;UBERON:0007135,8.65e-10,56;UBERON:0002346,3.18e-09,86;UBERON:0011216,5.55e-09,223;UBERON:0001897,4.83e-08,2;UBERON:0010225,4.83e-08,2;UBERON:0004121,7.04e-08,171;UBERON:0000924,7.04e-08,171;UBERON:0006601,7.04e-08,171;UBERON:0002780,2.57e-07,41;UBERON:0001890,2.57e-07,41;UBERON:0003080,2.57e-07,41;UBERON:0006240,2.57e-07,41;UBERON:0001557,3.26e-07,19 | |||
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| |||
|short_description=p6@RDX | |||
}} |
Revision as of 15:38, 10 September 2013
Short description: | p6@RDX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_RDX_5end |
Coexpression cluster: | NA |
Association with transcript: | -220bp_to_ENST00000343115_5end |
EntrezGene: | RDX |
HGNC: | 9944 |
UniProt: | P35241 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
larynx | 2.50e-16 | 9 |
spinal cord | 2.06e-11 | 3 |
dorsal region element | 2.06e-11 | 3 |
dorsum | 2.06e-11 | 3 |
central nervous system | 4.15e-11 | 81 |
nervous system | 1.15e-10 | 89 |
neural tube | 8.65e-10 | 56 |
neural rod | 8.65e-10 | 56 |
future spinal cord | 8.65e-10 | 56 |
neural keel | 8.65e-10 | 56 |
neurectoderm | 3.18e-09 | 86 |
organ system subdivision | 5.55e-09 | 223 |
dorsal plus ventral thalamus | 4.83e-08 | 2 |
thalamic complex | 4.83e-08 | 2 |
ectoderm-derived structure | 7.04e-08 | 171 |
ectoderm | 7.04e-08 | 171 |
presumptive ectoderm | 7.04e-08 | 171 |
regional part of forebrain | 2.57e-07 | 41 |
forebrain | 2.57e-07 | 41 |
anterior neural tube | 2.57e-07 | 41 |
future forebrain | 2.57e-07 | 41 |
upper respiratory tract | 3.26e-07 | 19 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.