FFCP PHASE1:Hg19::chr11:63684602..63684664,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=283248|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=27455|TSSclassifier=S|UniProt=Q8IZ40|association_with_transcript=-286bp_to_ENST00000301459,NM_173587,uc001nyc.2_5end|description=CAGE_peak_1_at_RCOR2_5end|id=chr11:63684602..63684664,-|ontology_enrichment_celltype=CL:0000055!4.62e-13!180;CL:0000133!1.06e-10!59;CL:0002319!9.86e-09!25;CL:0000221!1.54e-08!71;CL:0000393!3.14e-08!60;CL:0000211!3.14e-08!60;CL:0000333!7.46e-08!41|ontology_enrichment_celltype_v019=CL:0002319;1.81e-08;25|ontology_enrichment_celltype_v019_2=CL:0000133,6.98e-10,59;CL:0002319,1.56e-08,25;CL:0000393,2.34e-08,61;CL:0000211,2.34e-08,61;CL:0000221,3.31e-07,72;CL:0000047,4.87e-07,8|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3095!6.10e-09!22;DOID:2994!6.10e-09!22|ontology_enrichment_disease_v019=DOID:3095;1.90e-10;22!DOID:2994;1.90e-10;22|ontology_enrichment_disease_v019_2=DOID:3095,2.39e-10,22;DOID:2994,2.39e-10,22|ontology_enrichment_uberon=UBERON:0000475!1.58e-15!365;UBERON:0000481!3.33e-15!347;UBERON:0000119!1.30e-11!312;UBERON:0000073!3.02e-11!94;UBERON:0001016!3.02e-11!94;UBERON:0000483!3.32e-11!309;UBERON:0005743!9.12e-10!86;UBERON:0000924!1.99e-09!173;UBERON:0006601!1.99e-09!173;UBERON:0001017!3.10e-09!82;UBERON:0004121!1.08e-08!169;UBERON:0002346!2.98e-08!90;UBERON:0005256!4.64e-08!143;UBERON:0003104!9.27e-08!238;UBERON:0009142!9.27e-08!238;UBERON:0003056!1.68e-07!61;UBERON:0003075!1.90e-07!86;UBERON:0007284!1.90e-07!86;UBERON:0000922!1.90e-07!612;UBERON:0000468!3.63e-07!659;UBERON:0004290!8.75e-07!70|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.33e-11,89;UBERON:0003104,2.00e-10,160;UBERON:0009142,2.00e-10,160;UBERON:0001017,5.70e-10,81;UBERON:0004121,4.31e-09,171;UBERON:0000924,4.31e-09,171;UBERON:0006601,4.31e-09,171;UBERON:0003056,4.54e-09,61;UBERON:0002346,7.25e-09,86;UBERON:0000119,2.47e-08,309;UBERON:0000483,5.75e-08,306;UBERON:0003075,5.97e-08,82;UBERON:0007284,5.97e-08,82;UBERON:0007503,1.94e-07,78;UBERON:0011216,3.73e-07,223;UBERON:0007524,5.09e-07,73;UBERON:0000955,6.75e-07,68;UBERON:0006238,6.75e-07,68;UBERON:0003077,8.11e-07,72;UBERON:0007285,8.11e-07,72|phase1_expression=0.181678379270557,0.856402095563933,0.281908808191942,0,2.23480547213644,1.74467704820074,2.53299878168311,2.52687949370732,2.87304191019822,1.72013755551056,2.79120467188971,2.18441372130172,2.63766978228454,4.45558870656168,3.31397375727916,0.672325146451775,0.602694528023977,0.730310090387373,1.46379839637152,2.83178433576612,6.32402142857184,7.52291331547411,5.72471974262113,3.83248390204076,4.77062030460251,0.0764134057479513,0.0821005894499457,0.236132343941038,0,0,1.08371286321253,0.919421224478927,2.71085326900425,2.58827807116751,0.154934401160603,0,0.587200878669695,0,0.401088894940283,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0.289803085735052,0.14828656316206,0,0,0.226618685395132,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0.267440195783507,0,0,3.35350429851818,6.52099065402005,0,0.50133791063589,0.724232594804119,0.795285947051099,2.43317435151318,3.97046232089085,3.54767035940102,4.91874799881506,1.89919659471683,4.00724817121796,2.59549109949101,0.324547393654683,0.174129737299267,0.664789802594326,0.238490624305342,1.14398982156026,0.74291500265913,0.596287222100115,0,0.347140501607594,0,0,1.10047216776027,0.417989933073621,0,0.35576626268671,0,0.402829317109147,0.760272105718513,0.976248230192678,0,0.81014194788176,0.267899184852239,0,0,0,0,0.916008719652036,0,0,4.36094052142534,1.98788780678127,0.506522046658319,0.662045904066094,3.15520282823695,0.354668382198357,1.12135520028461,3.20246987189115,0.98667019366864,2.48968828319813,1.61652806483626,0.817309515567294,1.81628913173918,2.30470369792,10.5444644325208,4.05808099879417,1.1409436430889,5.23070381931304,3.52303495931295,4.37056949793955,4.6348766211742,1.42907919878425,5.28187564440602,3.09977343527296,0,0.494533858557114,0.910161361938026,7.18618141816238,4.37673896280572,3.25308151667107,0.554128230968366,0.877955241761676,0,0.150238058906597,0.680593098960126,1.79389635688862,1.92201649936711,2.7551147150743,2.10063767259082,2.06105058476878,0.772921620136887,0.744467425326359,1.85653965465393,3.89748020644795,2.77677151668526,2.02509777013059,0,1.06502877754984,0.403008392910561,3.22165125389926,0.193260853163297,0.272746120590835,0,62.8164586567416,69.4455986004583,74.8288992079698,50.2756116824547,61.818608464529,41.2424415755688,3.12899064659632,7.07565032012174,1.38134921352481,0.928735856063958,0.721879481669586,0.118306800039844,0,0,0.220587945464788,0.435758888184812,0.237270619111097,0.404493924480493,0.196221465125346,0.769494313892781,0.738155454624648,4.20725321410337,6.5851841813024,17.641045366265,0,0,0.590789906681404,0.88292619882930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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=283248 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27455 | |||
|TSSclassifier=S | |||
|UniProt=Q8IZ40 | |||
|association_with_transcript=-286bp_to_ENST00000301459,NM_173587,uc001nyc.2_5end | |||
|description=CAGE_peak_1_at_RCOR2_5end | |||
|id=chr11:63684602..63684664,- | |||
|ontology_enrichment_celltype=CL:0000055!4.62e-13!180;CL:0000133!1.06e-10!59;CL:0002319!9.86e-09!25;CL:0000221!1.54e-08!71;CL:0000393!3.14e-08!60;CL:0000211!3.14e-08!60;CL:0000333!7.46e-08!41 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.81e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,6.98e-10,59;CL:0002319,1.56e-08,25;CL:0000393,2.34e-08,61;CL:0000211,2.34e-08,61;CL:0000221,3.31e-07,72;CL:0000047,4.87e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!6.10e-09!22;DOID:2994!6.10e-09!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.90e-10;22!DOID:2994;1.90e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.39e-10,22;DOID:2994,2.39e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0000475!1.58e-15!365;UBERON:0000481!3.33e-15!347;UBERON:0000119!1.30e-11!312;UBERON:0000073!3.02e-11!94;UBERON:0001016!3.02e-11!94;UBERON:0000483!3.32e-11!309;UBERON:0005743!9.12e-10!86;UBERON:0000924!1.99e-09!173;UBERON:0006601!1.99e-09!173;UBERON:0001017!3.10e-09!82;UBERON:0004121!1.08e-08!169;UBERON:0002346!2.98e-08!90;UBERON:0005256!4.64e-08!143;UBERON:0003104!9.27e-08!238;UBERON:0009142!9.27e-08!238;UBERON:0003056!1.68e-07!61;UBERON:0003075!1.90e-07!86;UBERON:0007284!1.90e-07!86;UBERON:0000922!1.90e-07!612;UBERON:0000468!3.63e-07!659;UBERON:0004290!8.75e-07!70 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.33e-11,89;UBERON:0003104,2.00e-10,160;UBERON:0009142,2.00e-10,160;UBERON:0001017,5.70e-10,81;UBERON:0004121,4.31e-09,171;UBERON:0000924,4.31e-09,171;UBERON:0006601,4.31e-09,171;UBERON:0003056,4.54e-09,61;UBERON:0002346,7.25e-09,86;UBERON:0000119,2.47e-08,309;UBERON:0000483,5.75e-08,306;UBERON:0003075,5.97e-08,82;UBERON:0007284,5.97e-08,82;UBERON:0007503,1.94e-07,78;UBERON:0011216,3.73e-07,223;UBERON:0007524,5.09e-07,73;UBERON:0000955,6.75e-07,68;UBERON:0006238,6.75e-07,68;UBERON:0003077,8.11e-07,72;UBERON:0007285,8.11e-07,72 | |||
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| |||
|short_description=p1@RCOR2 | |||
}} |
Revision as of 18:41, 10 September 2013
Short description: | p1@RCOR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RCOR2_5end |
Coexpression cluster: | NA |
Association with transcript: | -286bp_to_ENST00000301459, NM_173587, uc001nyc.2_5end |
EntrezGene: | RCOR2 |
HGNC: | 27455 |
UniProt: | Q8IZ40 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 6.98e-10 | 59 |
neural cell | 1.56e-08 | 25 |
electrically responsive cell | 2.34e-08 | 61 |
electrically active cell | 2.34e-08 | 61 |
ectodermal cell | 3.31e-07 | 72 |
neuronal stem cell | 4.87e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.33e-11 | 89 |
mesenchyme | 2.00e-10 | 160 |
entire embryonic mesenchyme | 2.00e-10 | 160 |
central nervous system | 5.70e-10 | 81 |
ectoderm-derived structure | 4.31e-09 | 171 |
ectoderm | 4.31e-09 | 171 |
presumptive ectoderm | 4.31e-09 | 171 |
pre-chordal neural plate | 4.54e-09 | 61 |
neurectoderm | 7.25e-09 | 86 |
cell layer | 2.47e-08 | 309 |
epithelium | 5.75e-08 | 306 |
neural plate | 5.97e-08 | 82 |
presumptive neural plate | 5.97e-08 | 82 |
epithelial vesicle | 1.94e-07 | 78 |
organ system subdivision | 3.73e-07 | 223 |
dense mesenchyme tissue | 5.09e-07 | 73 |
brain | 6.75e-07 | 68 |
future brain | 6.75e-07 | 68 |
paraxial mesoderm | 8.11e-07 | 72 |
presumptive paraxial mesoderm | 8.11e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.39e-10 | 22 |
germ cell cancer | 2.39e-10 | 22 |
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