FFCP PHASE1:Hg19::chr11:17741228..17741243,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4654|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7611|TSSclassifier=S|UniProt=P15172|association_with_transcript=113bp_to_ENST00000250003_5end|coexpression_cluster_id=C797|description=CAGE_peak_4_at_MYOD1_5end|id=chr11:17741228..17741243,+|ontology_enrichment_celltype=CL:0000188!3.35e-41!9;CL:0000515!3.52e-24!4;CL:0002603!1.66e-18!3;CL:0000680!1.51e-10!57;CL:0000056!1.51e-10!57;CL:0000355!1.51e-10!57;CL:0000594!1.14e-08!3;CL:0000128!3.22e-08!7;CL:0000126!3.22e-08!7;CL:0000127!3.22e-08!7;CL:0002453!3.22e-08!7;CL:0002242!1.54e-07!1;CL:0000228!1.54e-07!1;CL:0002372!1.54e-07!1;CL:0000183!9.14e-07!59|ontology_enrichment_celltype_v019=CL:0000228;3.91e-19;1!CL:0002372;3.91e-19;1!CL:0000056;8.88e-19;4!CL:0000680;3.66e-11;7!CL:0002575;1.50e-10;2!CL:0002262;2.99e-10;2!CL:1000398;2.99e-10;2!CL:0000188;5.87e-09;9!CL:0002603;2.32e-07;3!CL:0000515;2.97e-07;3|ontology_enrichment_celltype_v019_2=CL:0000228,3.25e-19,1;CL:0002372,3.25e-19,1;CL:0000515,6.77e-19,4;CL:0002575,1.43e-10,2;CL:0002262,2.99e-10,2;CL:1000398,2.99e-10,2;CL:0000188,5.42e-09,9;CL:0002603,2.32e-07,3|ontology_enrichment_development_v019=CL:0000515;8.88e-19;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001134!3.62e-16!61;UBERON:0002036!3.62e-16!61;UBERON:0003082!3.62e-16!61;UBERON:0002385!1.45e-15!63;UBERON:0001015!1.45e-15!63;UBERON:0000383!1.45e-15!63;UBERON:0004290!1.01e-13!70;UBERON:0000486!2.65e-11!82;UBERON:0000914!3.92e-11!83;UBERON:0002329!3.92e-11!83;UBERON:0003077!3.92e-11!83;UBERON:0003059!3.92e-11!83;UBERON:0007282!3.92e-11!83;UBERON:0009618!3.92e-11!83;UBERON:0007285!3.92e-11!83;UBERON:0002037!1.63e-09!6;UBERON:0006215!1.63e-09!6;UBERON:0005418!2.84e-07!1;UBERON:0001389!2.84e-07!1;UBERON:0000026!2.84e-07!1;UBERON:0008784!2.84e-07!1;UBERON:0006058!2.84e-07!1;UBERON:0003663!2.84e-07!1;UBERON:0001383!2.84e-07!1;UBERON:0004256!2.84e-07!1;UBERON:0002529!2.84e-07!1;UBERON:0004708!2.84e-07!1;UBERON:0002101!2.84e-07!1;UBERON:0004709!2.84e-07!1;UBERON:0003661!2.84e-07!1;UBERON:0002471!2.84e-07!1;UBERON:0004357!2.84e-07!1;UBERON:0009872!2.84e-07!1;UBERON:0004347!2.84e-07!1;UBERON:0005420!2.84e-07!1;UBERON:0005732!2.84e-07!1;UBERON:0006057!2.84e-07!1;UBERON:0000978!2.84e-07!1;UBERON:0002103!2.84e-07!1;UBERON:0001665!2.84e-07!1;UBERON:0003823!2.84e-07!1;UBERON:0000154!2.84e-07!1;UBERON:0005733!2.84e-07!1;UBERON:0005730!2.84e-07!1|ontology_enrichment_uberon_v019=UBERON:0001134;2.38e-18;16!UBERON:0002036;2.38e-18;16!UBERON:0001281;2.99e-10;2!UBERON:0003497;2.99e-10;2!UBERON:0003909;2.99e-10;2!UBERON:0003835;2.99e-10;2!UBERON:0002385;1.45e-09;31!UBERON:0001015;1.45e-09;31!UBERON:0000383;1.45e-09;31!UBERON:0001723;2.97e-07;3!UBERON:0001280;2.97e-07;3!UBERON:0004647;2.97e-07;3!UBERON:0001033;2.97e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0001281,2.99e-10,2;UBERON:0003497,2.99e-10,2;UBERON:0003909,2.99e-10,2;UBERON:0003835,2.99e-10,2;UBERON:0001280,2.97e-07,3;UBERON:0004647,2.97e-07,3;UBERON:0005171,2.97e-07,3;UBERON:0001723,3.35e-07,3;UBERON:0001033,3.35e-07,3;UBERON:0010056,3.35e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,2.65200898617529,0.313454721478088,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.579125226670317,0.205476322550383,1.96967059563885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80400793335198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,2.90012154876366,0.308097234229289,0.460511024178389,0.689182862422653,0,0.145016693914229,0.681813019328807,0.890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,4.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4654 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7611 | |||
|TSSclassifier=S | |||
|UniProt=P15172 | |||
|association_with_transcript=113bp_to_ENST00000250003_5end | |||
|coexpression_cluster_id=C797 | |||
|description=CAGE_peak_4_at_MYOD1_5end | |||
|id=chr11:17741228..17741243,+ | |||
|ontology_enrichment_celltype=CL:0000188!3.35e-41!9;CL:0000515!3.52e-24!4;CL:0002603!1.66e-18!3;CL:0000680!1.51e-10!57;CL:0000056!1.51e-10!57;CL:0000355!1.51e-10!57;CL:0000594!1.14e-08!3;CL:0000128!3.22e-08!7;CL:0000126!3.22e-08!7;CL:0000127!3.22e-08!7;CL:0002453!3.22e-08!7;CL:0002242!1.54e-07!1;CL:0000228!1.54e-07!1;CL:0002372!1.54e-07!1;CL:0000183!9.14e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000228;3.91e-19;1!CL:0002372;3.91e-19;1!CL:0000056;8.88e-19;4!CL:0000680;3.66e-11;7!CL:0002575;1.50e-10;2!CL:0002262;2.99e-10;2!CL:1000398;2.99e-10;2!CL:0000188;5.87e-09;9!CL:0002603;2.32e-07;3!CL:0000515;2.97e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000228,3.25e-19,1;CL:0002372,3.25e-19,1;CL:0000515,6.77e-19,4;CL:0002575,1.43e-10,2;CL:0002262,2.99e-10,2;CL:1000398,2.99e-10,2;CL:0000188,5.42e-09,9;CL:0002603,2.32e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000515;8.88e-19;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001134!3.62e-16!61;UBERON:0002036!3.62e-16!61;UBERON:0003082!3.62e-16!61;UBERON:0002385!1.45e-15!63;UBERON:0001015!1.45e-15!63;UBERON:0000383!1.45e-15!63;UBERON:0004290!1.01e-13!70;UBERON:0000486!2.65e-11!82;UBERON:0000914!3.92e-11!83;UBERON:0002329!3.92e-11!83;UBERON:0003077!3.92e-11!83;UBERON:0003059!3.92e-11!83;UBERON:0007282!3.92e-11!83;UBERON:0009618!3.92e-11!83;UBERON:0007285!3.92e-11!83;UBERON:0002037!1.63e-09!6;UBERON:0006215!1.63e-09!6;UBERON:0005418!2.84e-07!1;UBERON:0001389!2.84e-07!1;UBERON:0000026!2.84e-07!1;UBERON:0008784!2.84e-07!1;UBERON:0006058!2.84e-07!1;UBERON:0003663!2.84e-07!1;UBERON:0001383!2.84e-07!1;UBERON:0004256!2.84e-07!1;UBERON:0002529!2.84e-07!1;UBERON:0004708!2.84e-07!1;UBERON:0002101!2.84e-07!1;UBERON:0004709!2.84e-07!1;UBERON:0003661!2.84e-07!1;UBERON:0002471!2.84e-07!1;UBERON:0004357!2.84e-07!1;UBERON:0009872!2.84e-07!1;UBERON:0004347!2.84e-07!1;UBERON:0005420!2.84e-07!1;UBERON:0005732!2.84e-07!1;UBERON:0006057!2.84e-07!1;UBERON:0000978!2.84e-07!1;UBERON:0002103!2.84e-07!1;UBERON:0001665!2.84e-07!1;UBERON:0003823!2.84e-07!1;UBERON:0000154!2.84e-07!1;UBERON:0005733!2.84e-07!1;UBERON:0005730!2.84e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;2.38e-18;16!UBERON:0002036;2.38e-18;16!UBERON:0001281;2.99e-10;2!UBERON:0003497;2.99e-10;2!UBERON:0003909;2.99e-10;2!UBERON:0003835;2.99e-10;2!UBERON:0002385;1.45e-09;31!UBERON:0001015;1.45e-09;31!UBERON:0000383;1.45e-09;31!UBERON:0001723;2.97e-07;3!UBERON:0001280;2.97e-07;3!UBERON:0004647;2.97e-07;3!UBERON:0001033;2.97e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,2.99e-10,2;UBERON:0003497,2.99e-10,2;UBERON:0003909,2.99e-10,2;UBERON:0003835,2.99e-10,2;UBERON:0001280,2.97e-07,3;UBERON:0004647,2.97e-07,3;UBERON:0005171,2.97e-07,3;UBERON:0001723,3.35e-07,3;UBERON:0001033,3.35e-07,3;UBERON:0010056,3.35e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,2.65200898617529,0.313454721478088,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.579125226670317,0.205476322550383,1.96967059563885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80400793335198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,2.90012154876366,0.308097234229289,0.460511024178389,0.689182862422653,0,0.145016693914229,0.681813019328807,0.890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,4.40030541129469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08629926763095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.102662806856247,3.4794432940146,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,1.02669990325584,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@MYOD1 | |||
}} |
Revision as of 16:57, 10 September 2013
Short description: | p4@MYOD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_MYOD1_5end |
Coexpression cluster: | C797_mesenchymal_skeletal_Endothelial_Pericytes_Skeletal_Astrocyte_left |
Association with transcript: | 113bp_to_ENST00000250003_5end |
EntrezGene: | MYOD1 |
HGNC: | 7611 |
UniProt: | P15172 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multinucleate cell | 3.25e-19 | 1 |
myotube | 3.25e-19 | 1 |
skeletal muscle myoblast | 6.77e-19 | 4 |
central nervous system pericyte | 1.43e-10 | 2 |
endothelial cell of sinusoid | 2.99e-10 | 2 |
endothelial cell of hepatic sinusoid | 2.99e-10 | 2 |
cell of skeletal muscle | 5.42e-09 | 9 |
astrocyte of the cerebellum | 2.32e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 2.99e-10 | 2 |
abdomen blood vessel | 2.99e-10 | 2 |
sinusoid | 2.99e-10 | 2 |
abdominal segment blood vessel | 2.99e-10 | 2 |
liver parenchyma | 2.97e-07 | 3 |
liver lobule | 2.97e-07 | 3 |
hepatic duct | 2.97e-07 | 3 |
tongue | 3.35e-07 | 3 |
gustatory system | 3.35e-07 | 3 |
future tongue | 3.35e-07 | 3 |
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