FFCP PHASE1:Hg19::chr10:102791231..102791249,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=81855|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16087|TSSclassifier=S|UniProt=Q9BWM7|association_with_transcript=235bp_to_ENST00000224807,NM_030971,uc001ksp.2_5end|description=CAGE_peak_5_at_SFXN3_5end|id=chr10:102791231..102791249,+|ontology_enrichment_celltype=CL:0000557!8.39e-10!71;CL:0000766!1.13e-09!76;CL:0000839!5.48e-09!70;CL:0002009!1.03e-08!65;CL:0002194!2.40e-08!63;CL:0000576!2.40e-08!63;CL:0000040!2.40e-08!63;CL:0000559!2.40e-08!63|ontology_enrichment_celltype_v019=CL:0000235;3.19e-08;6!CL:0002567;8.85e-08;3!CL:0000148;2.13e-07;10!CL:0002619;5.12e-07;3|ontology_enrichment_celltype_v019_2=CL:0000766,4.39e-08,72;CL:0000235,6.62e-08,6;CL:0002567,8.98e-08,3;CL:0000839,1.34e-07,66;CL:0000148,1.79e-07,10;CL:0000541,1.79e-07,10;CL:0000557,2.08e-07,67;CL:0002619,5.18e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!5.30e-10!57;UBERON:0005068!5.30e-10!57;UBERON:0006241!5.30e-10!57;UBERON:0007135!5.30e-10!57;UBERON:0007023!3.77e-09!115;UBERON:0002371!6.63e-09!80;UBERON:0002616!8.48e-09!59;UBERON:0004765!1.52e-08!101;UBERON:0001434!1.52e-08!101;UBERON:0001893!4.60e-08!34;UBERON:0001474!4.89e-08!86;UBERON:0002204!5.08e-08!167;UBERON:0002780!5.67e-08!41;UBERON:0001890!5.67e-08!41;UBERON:0006240!5.67e-08!41;UBERON:0002020!6.92e-08!34;UBERON:0003528!6.92e-08!34;UBERON:0002193!1.32e-07!112;UBERON:0000955!1.38e-07!69;UBERON:0006238!1.38e-07!69;UBERON:0002791!1.48e-07!33;UBERON:0002619!1.61e-07!22;UBERON:0002390!1.71e-07!102;UBERON:0003061!1.71e-07!102;UBERON:0003080!1.90e-07!42;UBERON:0001869!3.63e-07!32;UBERON:0001950!6.89e-07!20|ontology_enrichment_uberon_v019=UBERON:0001950;4.05e-11;20!UBERON:0001893;1.17e-10;34!UBERON:0002780;4.96e-10;41!UBERON:0001890;4.96e-10;41!UBERON:0002619;6.88e-10;22!UBERON:0000073;1.17e-09;53!UBERON:0002616;1.17e-09;53!UBERON:0001869;1.52e-08;32!UBERON:0003528;1.53e-08;34!UBERON:0002020;1.53e-08;34!UBERON:0000956;2.08e-08;25!UBERON:0000203;2.08e-08;25!UBERON:0002791;3.16e-08;32!UBERON:0000200;8.27e-08;6!UBERON:0001872;5.11e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.22e-17,56;UBERON:0005068,2.22e-17,56;UBERON:0006241,2.22e-17,56;UBERON:0007135,2.22e-17,56;UBERON:0000073,5.09e-17,53;UBERON:0002616,5.09e-17,53;UBERON:0002780,5.82e-15,41;UBERON:0001890,5.82e-15,41;UBERON:0003080,5.82e-15,41;UBERON:0006240,5.82e-15,41;UBERON:0000955,1.38e-12,68;UBERON:0006238,1.38e-12,68;UBERON:0001893,2.02e-12,34;UBERON:0001017,1.29e-11,81;UBERON:0001950,1.38e-11,20;UBERON:0003075,1.84e-11,82;UBERON:0007284,1.84e-11,82;UBERON:0003528,6.71e-11,34;UBERON:0002020,6.71e-11,34;UBERON:0010371,7.55e-11,104;UBERON:0002346,1.40e-10,86;UBERON:0001869,2.47e-10,32;UBERON:0002791,2.55e-10,32;UBERON:0002619,2.62e-10,22;UBERON:0003056,2.75e-10,61;UBERON:0001016,9.94e-10,89;UBERON:0000956,9.06e-09,25;UBERON:0000203,9.06e-09,25;UBERON:0007023,1.35e-08,114;UBERON:0002371,2.55e-08,76;UBERON:0000200,3.16e-08,6;UBERON:0001474,2.75e-07,82;UBERON:0001872,3.15e-07,5;UBERON:0002405,3.48e-07,93;UBERON:0010314,8.30e-07,132|phase1_expression=1.63510541343501,0.428201047781966,0.845726424575827,2.00146596706261,0.893922188854576,0,0,0.631719873426831,0,0.245733936501509,0,0,0.527533956456907,0.495065411840187,0,0,0,1.46062018077475,1.46379839637152,0.369363174230364,0,0.313454721478088,0,0,0,0,0,0,0.393364276848904,1.15148819429164,1.08371286321253,0,0.30120591877825,0,0,0,0,1.10799081706375,0.401088894940283,0.651032612147555,3.35873211359887,2.59114932815184,1.28787783817093,0.290796477559129,2.26725566213286,0.970336244751265,0.929716147622738,0.411167888021826,0.619412741790207,0.28769239232215,0.256160706529101,0,0,0,0,0.376484679085209,0,0.449446968890169,0.612167784741805,0.320929027076094,0,1.9791078011203,0.797854630486527,0.426224750532694,0.290209238628584,0.56738522469114,0,0.251248665256743,0.521482918420201,0.217188844705117,0,1.10483290796269,0.632924774881769,1.05627643155971,0.637812899895131,0.838634582033504,0.561643155732475,0.750884464207532,0.803627933485401,0.285012743741249,0.19891667719909,1.64397738388171,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0.393419540227666,0.393010762749165,1.23360899399706,0.668745981562712,0,0,0,0.445641827540694,0.294605907474837,0.443067789167242,0.541607727530031,0.384273959177026,0.650296737799391,0.328875809207352,0,0,0,0.267540828089713,0,0.453237370790265,0,0,0.253019692019503,0.318565414324097,0,0,0,0.127986611154418,0,0.236777252044017,0,1.61285394579786,1.33720097891754,0.434473211648397,0,0,0.12786256184353,0,0.50133791063589,0.434539556882471,0,0.486634870302636,0.0945348171640679,0,0.263504357079378,1.24430121722827,0,0,1.62273696827342,1.21890816109487,1.19662164466979,0,0,0.371457501329565,0,0.860234595106124,0,0.56530794192401,0,0.275118041940067,0.208994966536811,0.516833518338658,0.71153252537342,0.33472061276467,0.402829317109147,0,0.48812411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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=81855 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16087 | |||
|TSSclassifier=S | |||
|UniProt=Q9BWM7 | |||
|association_with_transcript=235bp_to_ENST00000224807,NM_030971,uc001ksp.2_5end | |||
|description=CAGE_peak_5_at_SFXN3_5end | |||
|id=chr10:102791231..102791249,+ | |||
|ontology_enrichment_celltype=CL:0000557!8.39e-10!71;CL:0000766!1.13e-09!76;CL:0000839!5.48e-09!70;CL:0002009!1.03e-08!65;CL:0002194!2.40e-08!63;CL:0000576!2.40e-08!63;CL:0000040!2.40e-08!63;CL:0000559!2.40e-08!63 | |||
|ontology_enrichment_celltype_v019=CL:0000235;3.19e-08;6!CL:0002567;8.85e-08;3!CL:0000148;2.13e-07;10!CL:0002619;5.12e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.39e-08,72;CL:0000235,6.62e-08,6;CL:0002567,8.98e-08,3;CL:0000839,1.34e-07,66;CL:0000148,1.79e-07,10;CL:0000541,1.79e-07,10;CL:0000557,2.08e-07,67;CL:0002619,5.18e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.30e-10!57;UBERON:0005068!5.30e-10!57;UBERON:0006241!5.30e-10!57;UBERON:0007135!5.30e-10!57;UBERON:0007023!3.77e-09!115;UBERON:0002371!6.63e-09!80;UBERON:0002616!8.48e-09!59;UBERON:0004765!1.52e-08!101;UBERON:0001434!1.52e-08!101;UBERON:0001893!4.60e-08!34;UBERON:0001474!4.89e-08!86;UBERON:0002204!5.08e-08!167;UBERON:0002780!5.67e-08!41;UBERON:0001890!5.67e-08!41;UBERON:0006240!5.67e-08!41;UBERON:0002020!6.92e-08!34;UBERON:0003528!6.92e-08!34;UBERON:0002193!1.32e-07!112;UBERON:0000955!1.38e-07!69;UBERON:0006238!1.38e-07!69;UBERON:0002791!1.48e-07!33;UBERON:0002619!1.61e-07!22;UBERON:0002390!1.71e-07!102;UBERON:0003061!1.71e-07!102;UBERON:0003080!1.90e-07!42;UBERON:0001869!3.63e-07!32;UBERON:0001950!6.89e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;4.05e-11;20!UBERON:0001893;1.17e-10;34!UBERON:0002780;4.96e-10;41!UBERON:0001890;4.96e-10;41!UBERON:0002619;6.88e-10;22!UBERON:0000073;1.17e-09;53!UBERON:0002616;1.17e-09;53!UBERON:0001869;1.52e-08;32!UBERON:0003528;1.53e-08;34!UBERON:0002020;1.53e-08;34!UBERON:0000956;2.08e-08;25!UBERON:0000203;2.08e-08;25!UBERON:0002791;3.16e-08;32!UBERON:0000200;8.27e-08;6!UBERON:0001872;5.11e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.22e-17,56;UBERON:0005068,2.22e-17,56;UBERON:0006241,2.22e-17,56;UBERON:0007135,2.22e-17,56;UBERON:0000073,5.09e-17,53;UBERON:0002616,5.09e-17,53;UBERON:0002780,5.82e-15,41;UBERON:0001890,5.82e-15,41;UBERON:0003080,5.82e-15,41;UBERON:0006240,5.82e-15,41;UBERON:0000955,1.38e-12,68;UBERON:0006238,1.38e-12,68;UBERON:0001893,2.02e-12,34;UBERON:0001017,1.29e-11,81;UBERON:0001950,1.38e-11,20;UBERON:0003075,1.84e-11,82;UBERON:0007284,1.84e-11,82;UBERON:0003528,6.71e-11,34;UBERON:0002020,6.71e-11,34;UBERON:0010371,7.55e-11,104;UBERON:0002346,1.40e-10,86;UBERON:0001869,2.47e-10,32;UBERON:0002791,2.55e-10,32;UBERON:0002619,2.62e-10,22;UBERON:0003056,2.75e-10,61;UBERON:0001016,9.94e-10,89;UBERON:0000956,9.06e-09,25;UBERON:0000203,9.06e-09,25;UBERON:0007023,1.35e-08,114;UBERON:0002371,2.55e-08,76;UBERON:0000200,3.16e-08,6;UBERON:0001474,2.75e-07,82;UBERON:0001872,3.15e-07,5;UBERON:0002405,3.48e-07,93;UBERON:0010314,8.30e-07,132 | |||
|phase1_expression=1.63510541343501,0.428201047781966,0.845726424575827,2.00146596706261,0.893922188854576,0,0,0.631719873426831,0,0.245733936501509,0,0,0.527533956456907,0.495065411840187,0,0,0,1.46062018077475,1.46379839637152,0.369363174230364,0,0.313454721478088,0,0,0,0,0,0,0.393364276848904,1.15148819429164,1.08371286321253,0,0.30120591877825,0,0,0,0,1.10799081706375,0.401088894940283,0.651032612147555,3.35873211359887,2.59114932815184,1.28787783817093,0.290796477559129,2.26725566213286,0.970336244751265,0.929716147622738,0.411167888021826,0.619412741790207,0.28769239232215,0.256160706529101,0,0,0,0,0.376484679085209,0,0.449446968890169,0.612167784741805,0.320929027076094,0,1.9791078011203,0.797854630486527,0.426224750532694,0.290209238628584,0.56738522469114,0,0.251248665256743,0.521482918420201,0.217188844705117,0,1.10483290796269,0.632924774881769,1.05627643155971,0.637812899895131,0.838634582033504,0.561643155732475,0.750884464207532,0.803627933485401,0.285012743741249,0.19891667719909,1.64397738388171,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0.393419540227666,0.393010762749165,1.23360899399706,0.668745981562712,0,0,0,0.445641827540694,0.294605907474837,0.443067789167242,0.541607727530031,0.384273959177026,0.650296737799391,0.328875809207352,0,0,0,0.267540828089713,0,0.453237370790265,0,0,0.253019692019503,0.318565414324097,0,0,0,0.127986611154418,0,0.236777252044017,0,1.61285394579786,1.33720097891754,0.434473211648397,0,0,0.12786256184353,0,0.50133791063589,0.434539556882471,0,0.486634870302636,0.0945348171640679,0,0.263504357079378,1.24430121722827,0,0,1.62273696827342,1.21890816109487,1.19662164466979,0,0,0.371457501329565,0,0.860234595106124,0,0.56530794192401,0,0.275118041940067,0.208994966536811,0.516833518338658,0.71153252537342,0.33472061276467,0.402829317109147,0,0.488124115096339,0,0,0.625098097988558,0.673588117878509,0.112611480483322,1.53316637465883,1.89853131913626,0,0,0,0,0,0.12663051166458,0.926864265692532,0.573673241497627,0.709336764396714,0,0,0.74000264525148,0.311211035399766,0.404132016209064,0.163461903113459,0.605429710579726,0,0,0.312160076830321,1.1409436430889,0.747243402759005,0,0,0.280901613404497,0,0.245668634623536,0.516628905878827,0,0.741800787835671,1.82032272387605,1.43723628363248,0.168336113954066,0.125118519871964,0.277064115484183,0,0.919463387397059,0.45071417671979,0.113432183160021,0.358779271377724,0.85422955527427,0,0.300091096084402,0.309157587715317,0,0.37223371266318,0.168776332241266,0.389748020644795,0.757301322732344,0.184099797284599,0.80823028409406,0,0.302256294682921,1.01736355386293,0.57978255948989,0.272746120590835,0.286804595389004,0,0,0,0,0,0,1.56449532329816,2.57296375277154,0,0.928735856063958,0.721879481669586,0.118306800039844,0,0.723033089650446,0.110293972732394,0,0.949082476444386,0.269662616320329,0.196221465125346,0.38474715694639,0.738155454624648,0,0.4115740113314,0,0,0,0,0.441463099414651,0.122988438543114,0.514703430895577,0.219500570817251,1.1240175325762,0,0.0925884451585296,0,0,0,0,0.117408694235822,0.433099343283221,0,0,0.790204397959275,0,2.46217006087397,3.04205544681009,1.33768046059855,0.93733833986777,0.335964256397719,0,0.0895585227028483,0,0,0.492663237895943,0.880484340132261,1.03664057770386,1.44119953416961,1.00993946741104,2.41291998310242,6.11181480893244,8.20522130470329,3.4214489204541,2.26220483947312,1.50171528921959,0.857479297891735,0.448524337381443,0,0,0.129271715757778,3.57656445851882,0,0.531876233169741,0,0,0,0,0,0,0,0,0.710783897485092,0,0.602878754119172,0.871533458600294,0.699810938274399,1.2162378064119,1.00451418286425,0,0,0,0,0.868687840005475,0.410952645100767,0.716243852959582,0.448340575974109,0.788123040807709,0.646882724578552,0.641715181398742,0,0,0,0,0,0.749007023947182,0,0.414415513436035,0.12269149171914,0.500170521059677,0.271265023699736,0.831883446123229,0.713715955188647,0.157702415033935,0.585707074963566,1.20378439891088,0,3.10419213877515,0,0.553107505625109,0.434418072340414,0.979005787313703,0,0,0,0.640365346820666,0,0,0,0.744323423456331,0.306923946576125,0,0.640695746278505,0.511707249066704,0.64341568457443,0,0,0.177561725313127,0.328508624055237,0.519254429183621,0.348631135379878,0,0.601519410909855,0.0920809889358963,0,0.182091168006717,0.131124414959424,0,0,0.784349769176855,1.46139224653261,0.316654886678627,0,0.170093705276516,0,0,0.541892875087706,1.00337954770971,0,0,0.223874754722178,0,0,0,0,1.30151357865721,0.206082023295445,0.183138929636687,0.165018999841176,0,0,0,0.096670718292122,0.154048617114644,0.307007349452259,0.137836572484531,0.214840489736547,0.145016693914229,0.0852266274161009,0.178064071293475,0.165284915360978,0,0,0,0.929691098594572,0.94443704049192,0,0.308033580176089,0.532306030317022,0,0.18532421910392,0.286249773483982,0,0.632758849437452,0.38126038784765,0.767693373934002,0,0,0.78494864019923,0,0,0.235624804691373,0.202182481573316,1.58510321173008,0,0,0.243713489631284,1.05650146756755,0.136499911407986,0,0,0.551365343546124,1.9903169257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| |||
|short_description=p5@SFXN3 | |||
}} |
Revision as of 11:21, 10 September 2013
Short description: | p5@SFXN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_SFXN3_5end |
Coexpression cluster: | NA |
Association with transcript: | 235bp_to_ENST00000224807, NM_030971, uc001ksp.2_5end |
EntrezGene: | SFXN3 |
HGNC: | 16087 |
UniProt: | Q9BWM7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.39e-08 | 72 |
macrophage | 6.62e-08 | 6 |
light melanocyte | 8.98e-08 | 3 |
myeloid lineage restricted progenitor cell | 1.34e-07 | 66 |
melanocyte | 1.79e-07 | 10 |
melanoblast | 1.79e-07 | 10 |
granulocyte monocyte progenitor cell | 2.08e-07 | 67 |
adult endothelial progenitor cell | 5.18e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
neural tube | 2.22e-17 | 56 |
neural rod | 2.22e-17 | 56 |
future spinal cord | 2.22e-17 | 56 |
neural keel | 2.22e-17 | 56 |
regional part of nervous system | 5.09e-17 | 53 |
regional part of brain | 5.09e-17 | 53 |
regional part of forebrain | 5.82e-15 | 41 |
forebrain | 5.82e-15 | 41 |
anterior neural tube | 5.82e-15 | 41 |
future forebrain | 5.82e-15 | 41 |
brain | 1.38e-12 | 68 |
future brain | 1.38e-12 | 68 |
telencephalon | 2.02e-12 | 34 |
central nervous system | 1.29e-11 | 81 |
neocortex | 1.38e-11 | 20 |
neural plate | 1.84e-11 | 82 |
presumptive neural plate | 1.84e-11 | 82 |
brain grey matter | 6.71e-11 | 34 |
gray matter | 6.71e-11 | 34 |
ecto-epithelium | 7.55e-11 | 104 |
neurectoderm | 1.40e-10 | 86 |
cerebral hemisphere | 2.47e-10 | 32 |
regional part of telencephalon | 2.55e-10 | 32 |
regional part of cerebral cortex | 2.62e-10 | 22 |
pre-chordal neural plate | 2.75e-10 | 61 |
nervous system | 9.94e-10 | 89 |
cerebral cortex | 9.06e-09 | 25 |
pallium | 9.06e-09 | 25 |
adult organism | 1.35e-08 | 114 |
bone marrow | 2.55e-08 | 76 |
gyrus | 3.16e-08 | 6 |
bone element | 2.75e-07 | 82 |
parietal lobe | 3.15e-07 | 5 |
immune system | 3.48e-07 | 93 |
structure with developmental contribution from neural crest | 8.30e-07 | 132 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.