FFCP PHASE1:Hg19::chr1:218519267..218519282,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7042|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11768|TSSclassifier=S|UniProt=|association_with_transcript=-108bp_to_uc001hll.2,uc001hlm.2,uc001hln.2,uc001hlo.2,uc010pue.1_5end|description=CAGE_peak_10_at_TGFB2_5end|id=chr1:218519267..218519282,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000708;6.16e-08;3|ontology_enrichment_celltype_v019_2=CL:0000708,3.85e-08,3|ontology_enrichment_development_v019=UBERON:0006241;2.96e-08;3!UBERON:0003057;2.96e-08;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!3.08e-22!69;UBERON:0006238!3.08e-22!69;UBERON:0001017!3.40e-22!82;UBERON:0005743!3.74e-22!86;UBERON:0001049!6.24e-21!57;UBERON:0005068!6.24e-21!57;UBERON:0006241!6.24e-21!57;UBERON:0007135!6.24e-21!57;UBERON:0000073!7.97e-21!94;UBERON:0001016!7.97e-21!94;UBERON:0002616!2.06e-20!59;UBERON:0000033!4.01e-19!123;UBERON:0003075!7.76e-19!86;UBERON:0007284!7.76e-19!86;UBERON:0004111!4.45e-18!241;UBERON:0000477!4.93e-18!286;UBERON:0002346!1.31e-17!90;UBERON:0000153!1.40e-17!129;UBERON:0007811!1.40e-17!129;UBERON:0000119!6.79e-17!312;UBERON:0004121!8.37e-17!169;UBERON:0000475!2.47e-16!365;UBERON:0000025!3.27e-16!194;UBERON:0000924!3.88e-16!173;UBERON:0006601!3.88e-16!173;UBERON:0000483!1.37e-15!309;UBERON:0000481!1.38e-15!347;UBERON:0002780!7.18e-15!41;UBERON:0001890!7.18e-15!41;UBERON:0006240!7.18e-15!41;UBERON:0001893!1.83e-14!34;UBERON:0003080!3.52e-14!42;UBERON:0002791!6.39e-14!33;UBERON:0001869!6.76e-14!32;UBERON:0002020!2.58e-13!34;UBERON:0003528!2.58e-13!34;UBERON:0003056!1.06e-12!61;UBERON:0000956!4.43e-11!25;UBERON:0000203!4.43e-11!25;UBERON:0002619!7.46e-11!22;UBERON:0007023!2.18e-10!115;UBERON:0001950!1.29e-09!20;UBERON:0000922!6.25e-09!612;UBERON:0002050!1.52e-08!605;UBERON:0005423!1.52e-08!605;UBERON:0000468!1.68e-08!659;UBERON:0000064!1.83e-08!219;UBERON:0000923!2.40e-08!604;UBERON:0005291!2.40e-08!604;UBERON:0006598!2.40e-08!604;UBERON:0002532!2.40e-08!604;UBERON:0003076!3.65e-08!15;UBERON:0003057!3.65e-08!15;UBERON:0000467!8.40e-08!625;UBERON:0000062!1.03e-07!511;UBERON:0000480!1.11e-07!626|ontology_enrichment_uberon_v019=UBERON:0002240;2.96e-08;3!UBERON:0005174;2.96e-08;3!UBERON:0001137;2.96e-08;3!UBERON:0003210;6.16e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.74e-11,81;UBERON:0003075,6.29e-10,82;UBERON:0007284,6.29e-10,82;UBERON:0001049,7.83e-10,56;UBERON:0005068,7.83e-10,56;UBERON:0006241,7.83e-10,56;UBERON:0007135,7.83e-10,56;UBERON:0000025,1.57e-09,192;UBERON:0002346,3.38e-09,86;UBERON:0003076,4.05e-09,15;UBERON:0003057,4.05e-09,15;UBERON:0001016,4.40e-09,89;UBERON:0010371,4.40e-09,104;UBERON:0000955,4.48e-09,68;UBERON:0006238,4.48e-09,68;UBERON:0000119,2.23e-08,309;UBERON:0002240,3.76e-08,3;UBERON:0005174,3.76e-08,3;UBERON:0001137,3.76e-08,3;UBERON:0003210,3.85e-08,3;UBERON:0004111,2.83e-07,240;UBERON:0000073,5.16e-07,53;UBERON:0002616,5.16e-07,53;UBERON:0000483,6.88e-07,306|phase1_expression=0.363356758541113,0,0.140954404095971,1.0007329835313,0.446961094427288,0,0,0,0.783556884599516,0,0,0.436882744260345,0,0,0,0,0.602694528023977,2.19093027116212,0.487932798790507,0.738726348460727,0.612002073732759,0.313454721478088,0,0.684372125364421,1.12988375635323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639312809217652,0.361439152384566,0.50133791063589,0.289693037921647,2.3858578411533,0,0.567208902984407,2.88248216701333,1.40535657109002,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,1.00416183829401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,1.72131935057184,1.14734648299525,0.709336764396714,0.560677600142307,2.1349799145941,1.2333377420858,0.311211035399766,0.134710672069688,0,2.11900398702904,0,0,0,0,0,0,0,0,0.816616685019573,0,1.34323515528495,0,0.494533858557114,0,0,0,0.125118519871964,0,0,0.30648779579902,0.150238058906597,0.340296549480063,0.358779271377724,0,0.211931901159562,0,0.103052529238439,0.257640540045629,0,0,0,0,0,0.161646056818812,0.355009592516614,0,0,0.193260853163297,0.272746120590835,0,0,0,0.116193942869518,0.10366105501537,0,0,1.56449532329816,0,0,0,0,0,0.337169380156203,0,0,0,0,0,0,0,0,2.80483547606892,0.4115740113314,0,0,0,0,0,0,1.3725424823882,0.439001141634502,0,0,0,0,0,0,0.231860809950154,5.9878434060269,0.144366447761074,0,0.380508304469197,1.58040879591855,0,0,0,0,0,1.17587489739202,0,1.07470227243418,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,1.90622843387113,3.48768055066624,1.1734125731352,0.387815147273333,0,0,0.531876233169741,0,0.257207374262142,0,0,1.00084595560703,0,0.823240336780769,0,0.710783897485092,0,0,0,0.099972991182057,0,0,0,1.4377491329495,2.29723871668228,0,0.144781306667579,0,0.358121926479791,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0.736148950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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7042 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11768 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-108bp_to_uc001hll.2,uc001hlm.2,uc001hln.2,uc001hlo.2,uc010pue.1_5end | |||
|description=CAGE_peak_10_at_TGFB2_5end | |||
|id=chr1:218519267..218519282,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000708;6.16e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000708,3.85e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006241;2.96e-08;3!UBERON:0003057;2.96e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!3.08e-22!69;UBERON:0006238!3.08e-22!69;UBERON:0001017!3.40e-22!82;UBERON:0005743!3.74e-22!86;UBERON:0001049!6.24e-21!57;UBERON:0005068!6.24e-21!57;UBERON:0006241!6.24e-21!57;UBERON:0007135!6.24e-21!57;UBERON:0000073!7.97e-21!94;UBERON:0001016!7.97e-21!94;UBERON:0002616!2.06e-20!59;UBERON:0000033!4.01e-19!123;UBERON:0003075!7.76e-19!86;UBERON:0007284!7.76e-19!86;UBERON:0004111!4.45e-18!241;UBERON:0000477!4.93e-18!286;UBERON:0002346!1.31e-17!90;UBERON:0000153!1.40e-17!129;UBERON:0007811!1.40e-17!129;UBERON:0000119!6.79e-17!312;UBERON:0004121!8.37e-17!169;UBERON:0000475!2.47e-16!365;UBERON:0000025!3.27e-16!194;UBERON:0000924!3.88e-16!173;UBERON:0006601!3.88e-16!173;UBERON:0000483!1.37e-15!309;UBERON:0000481!1.38e-15!347;UBERON:0002780!7.18e-15!41;UBERON:0001890!7.18e-15!41;UBERON:0006240!7.18e-15!41;UBERON:0001893!1.83e-14!34;UBERON:0003080!3.52e-14!42;UBERON:0002791!6.39e-14!33;UBERON:0001869!6.76e-14!32;UBERON:0002020!2.58e-13!34;UBERON:0003528!2.58e-13!34;UBERON:0003056!1.06e-12!61;UBERON:0000956!4.43e-11!25;UBERON:0000203!4.43e-11!25;UBERON:0002619!7.46e-11!22;UBERON:0007023!2.18e-10!115;UBERON:0001950!1.29e-09!20;UBERON:0000922!6.25e-09!612;UBERON:0002050!1.52e-08!605;UBERON:0005423!1.52e-08!605;UBERON:0000468!1.68e-08!659;UBERON:0000064!1.83e-08!219;UBERON:0000923!2.40e-08!604;UBERON:0005291!2.40e-08!604;UBERON:0006598!2.40e-08!604;UBERON:0002532!2.40e-08!604;UBERON:0003076!3.65e-08!15;UBERON:0003057!3.65e-08!15;UBERON:0000467!8.40e-08!625;UBERON:0000062!1.03e-07!511;UBERON:0000480!1.11e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0002240;2.96e-08;3!UBERON:0005174;2.96e-08;3!UBERON:0001137;2.96e-08;3!UBERON:0003210;6.16e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.74e-11,81;UBERON:0003075,6.29e-10,82;UBERON:0007284,6.29e-10,82;UBERON:0001049,7.83e-10,56;UBERON:0005068,7.83e-10,56;UBERON:0006241,7.83e-10,56;UBERON:0007135,7.83e-10,56;UBERON:0000025,1.57e-09,192;UBERON:0002346,3.38e-09,86;UBERON:0003076,4.05e-09,15;UBERON:0003057,4.05e-09,15;UBERON:0001016,4.40e-09,89;UBERON:0010371,4.40e-09,104;UBERON:0000955,4.48e-09,68;UBERON:0006238,4.48e-09,68;UBERON:0000119,2.23e-08,309;UBERON:0002240,3.76e-08,3;UBERON:0005174,3.76e-08,3;UBERON:0001137,3.76e-08,3;UBERON:0003210,3.85e-08,3;UBERON:0004111,2.83e-07,240;UBERON:0000073,5.16e-07,53;UBERON:0002616,5.16e-07,53;UBERON:0000483,6.88e-07,306 | |||
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| |||
|short_description=p10@TGFB2 | |||
}} |
Revision as of 03:40, 12 September 2013
Short description: | p10@TGFB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_TGFB2_5end |
Coexpression cluster: | NA |
Association with transcript: | -108bp_to_uc001hll.2, uc001hlm.2, uc001hln.2, uc001hlo.2, uc010pue.1_5end |
EntrezGene: | TGFB2 |
HGNC: | 11768 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leptomeningeal cell | 3.85e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.74e-11 | 81 |
neural plate | 6.29e-10 | 82 |
presumptive neural plate | 6.29e-10 | 82 |
neural tube | 7.83e-10 | 56 |
neural rod | 7.83e-10 | 56 |
future spinal cord | 7.83e-10 | 56 |
neural keel | 7.83e-10 | 56 |
tube | 1.57e-09 | 192 |
neurectoderm | 3.38e-09 | 86 |
posterior neural tube | 4.05e-09 | 15 |
chordal neural plate | 4.05e-09 | 15 |
nervous system | 4.40e-09 | 89 |
ecto-epithelium | 4.40e-09 | 104 |
brain | 4.48e-09 | 68 |
future brain | 4.48e-09 | 68 |
cell layer | 2.23e-08 | 309 |
spinal cord | 3.76e-08 | 3 |
dorsal region element | 3.76e-08 | 3 |
dorsum | 3.76e-08 | 3 |
blood-cerebrospinal fluid barrier | 3.85e-08 | 3 |
anatomical conduit | 2.83e-07 | 240 |
regional part of nervous system | 5.16e-07 | 53 |
regional part of brain | 5.16e-07 | 53 |
epithelium | 6.88e-07 | 306 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.