FFCP PHASE1:Hg19::chr1:211307378..211307389,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3756|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6250|TSSclassifier=S|UniProt=O95259|association_with_transcript=-63bp_to_ENST00000271751_5end|coexpression_cluster_id=C3936|description=CAGE_peak_5_at_KCNH1_5end|id=chr1:211307378..211307389,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000333;2.74e-09;5|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;2.19e-53;3!UBERON:0005425;2.21e-40;1!UBERON:0003056;1.83e-14;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:169;5.92e-08;6|ontology_enrichment_disease_v019_2=DOID:169,5.92e-08,6|ontology_enrichment_uberon=UBERON:0000955!8.35e-36!69;UBERON:0006238!8.35e-36!69;UBERON:0001049!7.28e-35!57;UBERON:0005068!7.28e-35!57;UBERON:0006241!7.28e-35!57;UBERON:0007135!7.28e-35!57;UBERON:0002616!2.06e-33!59;UBERON:0000073!4.85e-33!94;UBERON:0001016!4.85e-33!94;UBERON:0001893!6.92e-33!34;UBERON:0002020!2.05e-32!34;UBERON:0003528!2.05e-32!34;UBERON:0001017!1.01e-30!82;UBERON:0002791!1.25e-30!33;UBERON:0001869!5.97e-29!32;UBERON:0005743!7.08e-29!86;UBERON:0002780!8.05e-29!41;UBERON:0001890!8.05e-29!41;UBERON:0006240!8.05e-29!41;UBERON:0003080!5.36e-28!42;UBERON:0007023!2.00e-27!115;UBERON:0002619!3.90e-24!22;UBERON:0003075!1.32e-23!86;UBERON:0007284!1.32e-23!86;UBERON:0002346!3.53e-22!90;UBERON:0000033!2.58e-21!123;UBERON:0000956!6.99e-21!25;UBERON:0000203!6.99e-21!25;UBERON:0001950!4.91e-20!20;UBERON:0000153!7.16e-20!129;UBERON:0007811!7.16e-20!129;UBERON:0003056!4.36e-19!61;UBERON:0004121!4.39e-17!169;UBERON:0000200!1.46e-16!6;UBERON:0000924!1.90e-16!173;UBERON:0006601!1.90e-16!173;UBERON:0002308!1.93e-13!9;UBERON:0000125!1.93e-13!9;UBERON:0004732!1.58e-12!13;UBERON:0002298!3.59e-11!8;UBERON:0004733!2.34e-10!12;UBERON:0002028!2.34e-10!12;UBERON:0007277!2.34e-10!12;UBERON:0009663!2.27e-09!7;UBERON:0002771!1.21e-08!3;UBERON:0000988!2.04e-08!3;UBERON:0006331!4.00e-08!3;UBERON:0003076!4.61e-08!15;UBERON:0003057!4.61e-08!15;UBERON:0002680!1.40e-07!9;UBERON:0001895!1.40e-07!9;UBERON:0010092!1.40e-07!9;UBERON:0000064!2.36e-07!219;UBERON:0002420!3.34e-07!9;UBERON:0007245!3.34e-07!9;UBERON:0010009!3.34e-07!9;UBERON:0010011!3.34e-07!9;UBERON:0000454!3.34e-07!9;UBERON:0001870!4.22e-07!2;UBERON:0005162!8.13e-07!2;UBERON:0000122!8.13e-07!2|ontology_enrichment_uberon_v019=UBERON:0000941;2.21e-40;1!UBERON:0001785;2.21e-40;1!UBERON:0002464;2.21e-40;1!UBERON:0004904;2.21e-40;1!UBERON:0001021;2.21e-40;1!UBERON:0004732;4.39e-28;13!UBERON:0002037;2.38e-27;6!UBERON:0003714;5.69e-21;2!UBERON:0005162;5.69e-21;2!UBERON:0000122;5.69e-21;2!UBERON:0002680;1.24e-18;9!UBERON:0001895;1.24e-18;9!UBERON:0000010;1.35e-18;8!UBERON:0004733;2.94e-14;12!UBERON:0002028;2.94e-14;12!UBERON:0000013;2.74e-09;5!UBERON:0002410;2.74e-09;5|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.30e-40,1;UBERON:0001785,3.30e-40,1;UBERON:0002464,3.30e-40,1;UBERON:0004904,3.30e-40,1;UBERON:0001021,3.30e-40,1;UBERON:0003902,3.30e-40,1;UBERON:0005425,3.30e-40,1;UBERON:0004732,4.39e-28,13;UBERON:0002037,2.08e-27,6;UBERON:0006215,2.08e-27,6;UBERON:0003714,6.96e-21,2;UBERON:0005162,6.96e-21,2;UBERON:0000122,6.96e-21,2;UBERON:0002680,1.13e-18,9;UBERON:0001895,1.13e-18,9;UBERON:0010092,1.13e-18,9;UBERON:0000010,1.48e-18,8;UBERON:0004733,2.75e-14,12;UBERON:0002028,2.75e-14,12;UBERON:0007277,2.75e-14,12;UBERON:0003076,1.21e-11,15;UBERON:0003057,1.21e-11,15;UBERON:0001781,3.79e-11,4;UBERON:0000013,2.74e-09,5;UBERON:0002410,2.74e-09,5;UBERON:0000966,7.25e-08,6;UBERON:0005388,7.25e-08,6;UBERON:0001802,7.25e-08,6;UBERON:0001016,1.48e-07,89|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.144846518960824,0.795285947051099,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0.285826432630578,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0.27470839445503,0.082509499920588,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47787785689595,0,0,0,0,0,0,0,0,0,0.098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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3756 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6250 | |||
|TSSclassifier=S | |||
|UniProt=O95259 | |||
|association_with_transcript=-63bp_to_ENST00000271751_5end | |||
|coexpression_cluster_id=C3936 | |||
|description=CAGE_peak_5_at_KCNH1_5end | |||
|id=chr1:211307378..211307389,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000333;2.74e-09;5 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.19e-53;3!UBERON:0005425;2.21e-40;1!UBERON:0003056;1.83e-14;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;5.92e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,5.92e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0000955!8.35e-36!69;UBERON:0006238!8.35e-36!69;UBERON:0001049!7.28e-35!57;UBERON:0005068!7.28e-35!57;UBERON:0006241!7.28e-35!57;UBERON:0007135!7.28e-35!57;UBERON:0002616!2.06e-33!59;UBERON:0000073!4.85e-33!94;UBERON:0001016!4.85e-33!94;UBERON:0001893!6.92e-33!34;UBERON:0002020!2.05e-32!34;UBERON:0003528!2.05e-32!34;UBERON:0001017!1.01e-30!82;UBERON:0002791!1.25e-30!33;UBERON:0001869!5.97e-29!32;UBERON:0005743!7.08e-29!86;UBERON:0002780!8.05e-29!41;UBERON:0001890!8.05e-29!41;UBERON:0006240!8.05e-29!41;UBERON:0003080!5.36e-28!42;UBERON:0007023!2.00e-27!115;UBERON:0002619!3.90e-24!22;UBERON:0003075!1.32e-23!86;UBERON:0007284!1.32e-23!86;UBERON:0002346!3.53e-22!90;UBERON:0000033!2.58e-21!123;UBERON:0000956!6.99e-21!25;UBERON:0000203!6.99e-21!25;UBERON:0001950!4.91e-20!20;UBERON:0000153!7.16e-20!129;UBERON:0007811!7.16e-20!129;UBERON:0003056!4.36e-19!61;UBERON:0004121!4.39e-17!169;UBERON:0000200!1.46e-16!6;UBERON:0000924!1.90e-16!173;UBERON:0006601!1.90e-16!173;UBERON:0002308!1.93e-13!9;UBERON:0000125!1.93e-13!9;UBERON:0004732!1.58e-12!13;UBERON:0002298!3.59e-11!8;UBERON:0004733!2.34e-10!12;UBERON:0002028!2.34e-10!12;UBERON:0007277!2.34e-10!12;UBERON:0009663!2.27e-09!7;UBERON:0002771!1.21e-08!3;UBERON:0000988!2.04e-08!3;UBERON:0006331!4.00e-08!3;UBERON:0003076!4.61e-08!15;UBERON:0003057!4.61e-08!15;UBERON:0002680!1.40e-07!9;UBERON:0001895!1.40e-07!9;UBERON:0010092!1.40e-07!9;UBERON:0000064!2.36e-07!219;UBERON:0002420!3.34e-07!9;UBERON:0007245!3.34e-07!9;UBERON:0010009!3.34e-07!9;UBERON:0010011!3.34e-07!9;UBERON:0000454!3.34e-07!9;UBERON:0001870!4.22e-07!2;UBERON:0005162!8.13e-07!2;UBERON:0000122!8.13e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;2.21e-40;1!UBERON:0001785;2.21e-40;1!UBERON:0002464;2.21e-40;1!UBERON:0004904;2.21e-40;1!UBERON:0001021;2.21e-40;1!UBERON:0004732;4.39e-28;13!UBERON:0002037;2.38e-27;6!UBERON:0003714;5.69e-21;2!UBERON:0005162;5.69e-21;2!UBERON:0000122;5.69e-21;2!UBERON:0002680;1.24e-18;9!UBERON:0001895;1.24e-18;9!UBERON:0000010;1.35e-18;8!UBERON:0004733;2.94e-14;12!UBERON:0002028;2.94e-14;12!UBERON:0000013;2.74e-09;5!UBERON:0002410;2.74e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.30e-40,1;UBERON:0001785,3.30e-40,1;UBERON:0002464,3.30e-40,1;UBERON:0004904,3.30e-40,1;UBERON:0001021,3.30e-40,1;UBERON:0003902,3.30e-40,1;UBERON:0005425,3.30e-40,1;UBERON:0004732,4.39e-28,13;UBERON:0002037,2.08e-27,6;UBERON:0006215,2.08e-27,6;UBERON:0003714,6.96e-21,2;UBERON:0005162,6.96e-21,2;UBERON:0000122,6.96e-21,2;UBERON:0002680,1.13e-18,9;UBERON:0001895,1.13e-18,9;UBERON:0010092,1.13e-18,9;UBERON:0000010,1.48e-18,8;UBERON:0004733,2.75e-14,12;UBERON:0002028,2.75e-14,12;UBERON:0007277,2.75e-14,12;UBERON:0003076,1.21e-11,15;UBERON:0003057,1.21e-11,15;UBERON:0001781,3.79e-11,4;UBERON:0000013,2.74e-09,5;UBERON:0002410,2.74e-09,5;UBERON:0000966,7.25e-08,6;UBERON:0005388,7.25e-08,6;UBERON:0001802,7.25e-08,6;UBERON:0001016,1.48e-07,89 | |||
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|short_description=p5@KCNH1 | |||
}} |
Revision as of 03:28, 12 September 2013
Short description: | p5@KCNH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_KCNH1_5end |
Coexpression cluster: | C3936_anaplastic_nonsmall_occipital_postcentral_paracentral_frontal_insula |
Association with transcript: | -63bp_to_ENST00000271751_5end |
EntrezGene: | KCNH1 |
HGNC: | 6250 |
UniProt: | O95259 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.30e-40 | 1 |
cranial nerve | 3.30e-40 | 1 |
nerve trunk | 3.30e-40 | 1 |
nerve connecting eye with brain | 3.30e-40 | 1 |
nerve | 3.30e-40 | 1 |
retinal neural layer | 3.30e-40 | 1 |
presumptive neural retina | 3.30e-40 | 1 |
segmental subdivision of nervous system | 4.39e-28 | 13 |
cerebellum | 2.08e-27 | 6 |
rhombic lip | 2.08e-27 | 6 |
neural tissue | 6.96e-21 | 2 |
multi cell component structure | 6.96e-21 | 2 |
neuron projection bundle | 6.96e-21 | 2 |
regional part of metencephalon | 1.13e-18 | 9 |
metencephalon | 1.13e-18 | 9 |
future metencephalon | 1.13e-18 | 9 |
peripheral nervous system | 1.48e-18 | 8 |
segmental subdivision of hindbrain | 2.75e-14 | 12 |
hindbrain | 2.75e-14 | 12 |
presumptive hindbrain | 2.75e-14 | 12 |
posterior neural tube | 1.21e-11 | 15 |
chordal neural plate | 1.21e-11 | 15 |
layer of retina | 3.79e-11 | 4 |
sympathetic nervous system | 2.74e-09 | 5 |
autonomic nervous system | 2.74e-09 | 5 |
retina | 7.25e-08 | 6 |
photoreceptor array | 7.25e-08 | 6 |
posterior segment of eyeball | 7.25e-08 | 6 |
nervous system | 1.48e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 5.92e-08 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.