FFCP PHASE1:Hg19::chr1:155881156..155881210,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6016 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10023 | |||
|TSSclassifier=S | |||
|UniProt=Q92963,B4DQE8,Q5VY90 | |||
|association_with_transcript=0bp_to_ENST00000368323,ENST00000539040,NM_006912,uc001fmh.1,uc010pgr.1_5end | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_RIT1_5end | |||
|id=chr1:155881156..155881210,- | |||
|ontology_enrichment_celltype=CL:0000766!7.62e-28!76;CL:0000839!8.31e-24!70;CL:0000557!1.77e-23!71;CL:0002009!2.07e-22!65;CL:0002194!5.54e-22!63;CL:0000576!5.54e-22!63;CL:0000040!5.54e-22!63;CL:0000559!5.54e-22!63;CL:0000738!2.14e-21!140;CL:0002057!1.10e-20!42;CL:0000860!7.73e-19!45;CL:0002031!3.81e-16!124;CL:0000763!1.14e-14!112;CL:0000049!1.14e-14!112;CL:0002087!1.72e-14!119;CL:0000037!6.13e-12!172;CL:0000566!6.13e-12!172;CL:0002032!3.41e-11!165;CL:0000837!3.41e-11!165;CL:0000988!8.71e-10!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.47e-19;33!CL:0002057;1.47e-19;33!CL:0000473;6.26e-19;39!CL:0000234;6.26e-19;39!CL:0000576;3.68e-13;48!CL:0000766;3.44e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.24e-29,72;CL:0000839,4.40e-25,66;CL:0000557,1.02e-24,67;CL:0002009,1.04e-23,61;CL:0000473,1.14e-23,48;CL:0000234,1.14e-23,48;CL:0002194,2.66e-23,59;CL:0000576,2.66e-23,59;CL:0000040,2.66e-23,59;CL:0000559,2.66e-23,59;CL:0000738,6.48e-22,136;CL:0000860,1.10e-20,42;CL:0002057,1.10e-20,42;CL:0002031,1.36e-16,120;CL:0000763,4.00e-15,108;CL:0000049,4.00e-15,108;CL:0002087,6.55e-15,115;CL:0000037,3.69e-12,168;CL:0002032,2.07e-11,161;CL:0000837,2.07e-11,161;CL:0000988,3.17e-10,177;CL:0000134,5.70e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;2.30e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.27e-22!102;UBERON:0003061!3.27e-22!102;UBERON:0002193!1.28e-21!112;UBERON:0002371!1.69e-19!80;UBERON:0001474!3.28e-17!86;UBERON:0004765!1.06e-14!101;UBERON:0001434!1.06e-14!101;UBERON:0002405!4.41e-11!115;UBERON:0003081!6.57e-09!216;UBERON:0002204!2.31e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.38e-23,98;UBERON:0003061,5.38e-23,98;UBERON:0002193,2.66e-22,108;UBERON:0002371,2.14e-20,76;UBERON:0002405,1.11e-18,93;UBERON:0001474,6.16e-18,82;UBERON:0004765,4.49e-15,90;UBERON:0001434,2.87e-14,100;UBERON:0003081,3.21e-11,203;UBERON:0000926,5.85e-07,315;UBERON:0004120,5.85e-07,315;UBERON:0006603,5.85e-07,315;UBERON:0002204,7.86e-07,167 | |||
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| |||
|short_description=p1@RIT1 | |||
}} |
Revision as of 00:47, 12 September 2013
Short description: | p1@RIT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RIT1_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000368323, ENST00000539040, NM_006912, uc001fmh.1, uc010pgr.1_5end |
EntrezGene: | RIT1 |
HGNC: | 10023 |
UniProt: | Q92963B4DQE8Q5VY90 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.24e-29 | 72 |
myeloid lineage restricted progenitor cell | 4.40e-25 | 66 |
granulocyte monocyte progenitor cell | 1.02e-24 | 67 |
macrophage dendritic cell progenitor | 1.04e-23 | 61 |
defensive cell | 1.14e-23 | 48 |
phagocyte | 1.14e-23 | 48 |
monopoietic cell | 2.66e-23 | 59 |
monocyte | 2.66e-23 | 59 |
monoblast | 2.66e-23 | 59 |
promonocyte | 2.66e-23 | 59 |
leukocyte | 6.48e-22 | 136 |
classical monocyte | 1.10e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.10e-20 | 42 |
hematopoietic lineage restricted progenitor cell | 1.36e-16 | 120 |
myeloid cell | 4.00e-15 | 108 |
common myeloid progenitor | 4.00e-15 | 108 |
nongranular leukocyte | 6.55e-15 | 115 |
hematopoietic stem cell | 3.69e-12 | 168 |
hematopoietic oligopotent progenitor cell | 2.07e-11 | 161 |
hematopoietic multipotent progenitor cell | 2.07e-11 | 161 |
hematopoietic cell | 3.17e-10 | 177 |
mesenchymal cell | 5.70e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.38e-23 | 98 |
blood island | 5.38e-23 | 98 |
hemolymphoid system | 2.66e-22 | 108 |
bone marrow | 2.14e-20 | 76 |
immune system | 1.11e-18 | 93 |
bone element | 6.16e-18 | 82 |
skeletal element | 4.49e-15 | 90 |
skeletal system | 2.87e-14 | 100 |
lateral plate mesoderm | 3.21e-11 | 203 |
mesoderm | 5.85e-07 | 315 |
mesoderm-derived structure | 5.85e-07 | 315 |
presumptive mesoderm | 5.85e-07 | 315 |
musculoskeletal system | 7.86e-07 | 167 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.