FFCP PHASE1:Hg19::chr1:103574024..103574063,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1301|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2186|TSSclassifier=S|UniProt=F5H5Z5,P12107,E9PCU0,Q59HB5,Q149N0|association_with_transcript=0bp_to_ENST00000353414,ENST00000358392,ENST00000370090,ENST00000370096,ENST00000512756,NM_001190709,NM_001854,NM_080629,NM_080630,uc001dul.2,uc001dum.2,uc001dun.2,uc009weh.2_5end|coexpression_cluster_id=C2510|description=CAGE_peak_1_at_COL11A1_5end|id=chr1:103574024..103574063,-|ontology_enrichment_celltype=CL:0000055!5.15e-22!180;CL:0000325!8.60e-09!39;CL:0000057!5.41e-08!75;CL:0000133!8.32e-08!59;CL:0000075!2.74e-07!27|ontology_enrichment_celltype_v019=CL:0000075;2.46e-07;27|ontology_enrichment_celltype_v019_2=CL:0000133,4.87e-08,59;CL:0000075,2.15e-07,27|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!1.71e-22!86;UBERON:0001017!8.97e-21!82;UBERON:0000073!2.54e-20!94;UBERON:0001016!2.54e-20!94;UBERON:0000475!1.52e-17!365;UBERON:0004121!3.05e-17!169;UBERON:0000924!1.42e-16!173;UBERON:0006601!1.42e-16!173;UBERON:0000033!3.03e-16!123;UBERON:0002616!4.35e-16!59;UBERON:0000955!5.02e-16!69;UBERON:0006238!5.02e-16!69;UBERON:0000153!7.94e-16!129;UBERON:0007811!7.94e-16!129;UBERON:0003075!1.35e-15!86;UBERON:0007284!1.35e-15!86;UBERON:0002346!1.45e-14!90;UBERON:0001049!4.71e-14!57;UBERON:0005068!4.71e-14!57;UBERON:0006241!4.71e-14!57;UBERON:0007135!4.71e-14!57;UBERON:0003056!1.09e-13!61;UBERON:0002020!4.17e-10!34;UBERON:0003528!4.17e-10!34;UBERON:0003080!4.61e-10!42;UBERON:0002780!4.71e-10!41;UBERON:0001890!4.71e-10!41;UBERON:0006240!4.71e-10!41;UBERON:0001893!8.13e-10!34;UBERON:0002791!1.21e-09!33;UBERON:0001869!1.68e-09!32;UBERON:0007625!3.00e-08!11;UBERON:0000956!4.02e-08!25;UBERON:0000203!4.02e-08!25;UBERON:0000481!2.05e-07!347|ontology_enrichment_uberon_v019=UBERON:0003528;2.53e-09;34!UBERON:0002020;2.53e-09;34!UBERON:0001017;2.69e-09;75!UBERON:0007625;2.91e-09;11!UBERON:0001869;3.31e-09;32!UBERON:0002791;3.37e-09;32!UBERON:0001893;4.64e-09;34!UBERON:0000956;4.73e-09;25!UBERON:0000203;4.73e-09;25!UBERON:0000073;6.24e-08;53!UBERON:0002616;6.24e-08;53!UBERON:0002780;7.76e-08;41!UBERON:0001890;7.76e-08;41!UBERON:0006876;1.75e-07;11!UBERON:0001016;2.10e-07;83!UBERON:0002619;3.18e-07;22!UBERON:0000955;5.21e-07;68!UBERON:0001950;9.05e-07;20|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.22e-22,81;UBERON:0001016,4.40e-20,89;UBERON:0000955,5.48e-17,68;UBERON:0006238,5.48e-17,68;UBERON:0004121,7.39e-17,171;UBERON:0000924,7.39e-17,171;UBERON:0006601,7.39e-17,171;UBERON:0003075,1.60e-16,82;UBERON:0007284,1.60e-16,82;UBERON:0002346,1.28e-15,86;UBERON:0003056,8.39e-15,61;UBERON:0001049,2.67e-14,56;UBERON:0005068,2.67e-14,56;UBERON:0006241,2.67e-14,56;UBERON:0007135,2.67e-14,56;UBERON:0010371,2.20e-13,104;UBERON:0000073,4.05e-13,53;UBERON:0002616,4.05e-13,53;UBERON:0010314,1.93e-12,132;UBERON:0003528,8.92e-11,34;UBERON:0002020,8.92e-11,34;UBERON:0001893,1.88e-10,34;UBERON:0002780,2.46e-10,41;UBERON:0001890,2.46e-10,41;UBERON:0003080,2.46e-10,41;UBERON:0006240,2.46e-10,41;UBERON:0001869,4.38e-10,32;UBERON:0002791,4.61e-10,32;UBERON:0007625,2.91e-09,11;UBERON:0000956,4.07e-09,25;UBERON:0000203,4.07e-09,25;UBERON:0006876,1.64e-07,11;UBERON:0002619,2.76e-07,22;UBERON:0011216,4.58e-07,223;UBERON:0001950,8.40e-07,20|phase1_expression=264.34204183866,269.338459054857,186.341722214874,313.229423845298,114.869001267813,27.9148327712118,121.583941520789,15.1612769622439,0.261185628199839,0.245733936501509,0,0,0,44.8034197715369,68.2678593999507,0,0,0,0,12.5583479238324,16.116054608296,21.31492106051,89.0193919977586,52.8335280781333,98.1743441631358,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,3.96373941714944,5.78302643815306,6.01605492763067,22.161517401006,417.525122201827,993.22177028768,102.664811440178,95.7870997038276,90.6454988353061,0.982343066232845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.366403487860815,0,0,0,101.87925009754,0,0,0.286836620748814,1.41867352879343,19.6237160049807,0,2.4666754841716,1.8672662123986,0.134710672069688,0.326923806226917,395.194243580916,415.422841550079,0.937285727335186,0,0,0,0.704606991862589,0.161872944368132,0.140450806702248,1.42907919878425,2.33385202892359,1.85986406116378,71.2801714369232,64.0421346831462,0,0,0.841680569770331,1.12606667884768,0.554128230968366,15.3642167308293,18.6957555437402,36.2073721964898,0,219.931693354545,172.767927554221,5.51022943014861,0,0.618315175430633,130.623753803134,70.7244054060041,1.85653965465393,1.07180705677318,8.33031455005578,13.8074847963449,0.80823028409406,168.984566037908,40.9053518804219,20.6863922618795,0,0,0,1.21973706129595,0.795178609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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1301 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2186 | |||
|TSSclassifier=S | |||
|UniProt=F5H5Z5,P12107,E9PCU0,Q59HB5,Q149N0 | |||
|association_with_transcript=0bp_to_ENST00000353414,ENST00000358392,ENST00000370090,ENST00000370096,ENST00000512756,NM_001190709,NM_001854,NM_080629,NM_080630,uc001dul.2,uc001dum.2,uc001dun.2,uc009weh.2_5end | |||
|coexpression_cluster_id=C2510 | |||
|description=CAGE_peak_1_at_COL11A1_5end | |||
|id=chr1:103574024..103574063,- | |||
|ontology_enrichment_celltype=CL:0000055!5.15e-22!180;CL:0000325!8.60e-09!39;CL:0000057!5.41e-08!75;CL:0000133!8.32e-08!59;CL:0000075!2.74e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000075;2.46e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,4.87e-08,59;CL:0000075,2.15e-07,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.71e-22!86;UBERON:0001017!8.97e-21!82;UBERON:0000073!2.54e-20!94;UBERON:0001016!2.54e-20!94;UBERON:0000475!1.52e-17!365;UBERON:0004121!3.05e-17!169;UBERON:0000924!1.42e-16!173;UBERON:0006601!1.42e-16!173;UBERON:0000033!3.03e-16!123;UBERON:0002616!4.35e-16!59;UBERON:0000955!5.02e-16!69;UBERON:0006238!5.02e-16!69;UBERON:0000153!7.94e-16!129;UBERON:0007811!7.94e-16!129;UBERON:0003075!1.35e-15!86;UBERON:0007284!1.35e-15!86;UBERON:0002346!1.45e-14!90;UBERON:0001049!4.71e-14!57;UBERON:0005068!4.71e-14!57;UBERON:0006241!4.71e-14!57;UBERON:0007135!4.71e-14!57;UBERON:0003056!1.09e-13!61;UBERON:0002020!4.17e-10!34;UBERON:0003528!4.17e-10!34;UBERON:0003080!4.61e-10!42;UBERON:0002780!4.71e-10!41;UBERON:0001890!4.71e-10!41;UBERON:0006240!4.71e-10!41;UBERON:0001893!8.13e-10!34;UBERON:0002791!1.21e-09!33;UBERON:0001869!1.68e-09!32;UBERON:0007625!3.00e-08!11;UBERON:0000956!4.02e-08!25;UBERON:0000203!4.02e-08!25;UBERON:0000481!2.05e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;2.53e-09;34!UBERON:0002020;2.53e-09;34!UBERON:0001017;2.69e-09;75!UBERON:0007625;2.91e-09;11!UBERON:0001869;3.31e-09;32!UBERON:0002791;3.37e-09;32!UBERON:0001893;4.64e-09;34!UBERON:0000956;4.73e-09;25!UBERON:0000203;4.73e-09;25!UBERON:0000073;6.24e-08;53!UBERON:0002616;6.24e-08;53!UBERON:0002780;7.76e-08;41!UBERON:0001890;7.76e-08;41!UBERON:0006876;1.75e-07;11!UBERON:0001016;2.10e-07;83!UBERON:0002619;3.18e-07;22!UBERON:0000955;5.21e-07;68!UBERON:0001950;9.05e-07;20 | |||
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| |||
|short_description=p1@COL11A1 | |||
}} |
Revision as of 23:12, 11 September 2013
Short description: | p1@COL11A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_COL11A1_5end |
Coexpression cluster: | C2510_Preadipocyte_Chondrocyte_Osteoblast_Wilms_rhabdomyosarcoma_adrenal_Lens |
Association with transcript: | 0bp_to_ENST00000353414, ENST00000358392, ENST00000370090, ENST00000370096, ENST00000512756, NM_001190709, NM_001854, NM_080629, NM_080630, uc001dul.2, uc001dum.2, uc001dun.2, uc009weh.2_5end |
EntrezGene: | COL11A1 |
HGNC: | 2186 |
UniProt: | F5H5Z5P12107E9PCU0Q59HB5Q149N0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 4.87e-08 | 59 |
columnar/cuboidal epithelial cell | 2.15e-07 | 27 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.