FFCP PHASE1:Hg19::chr1:78353949..78353981,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=91624|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29557|TSSclassifier=W|UniProt=E7ETM8|association_with_transcript=-216bp_to_ENST00000401035_5end|description=CAGE_peak_8_at_NEXN_5end|id=chr1:78353949..78353981,+|ontology_enrichment_celltype=CL:0000055!2.10e-23!180;CL:0000057!2.89e-17!75;CL:0002620!9.35e-08!23;CL:0000136!3.38e-07!15|ontology_enrichment_celltype_v019=CL:0002334;8.73e-08;12!CL:0002615;2.99e-07;3!CL:0000136;3.50e-07;13!CL:0002580;4.44e-07;3!CL:0002579;4.44e-07;3|ontology_enrichment_celltype_v019_2=CL:0000057,1.17e-15,76;CL:0002334,1.01e-07,12;CL:0002615,1.68e-07,3;CL:0002580,3.99e-07,3;CL:0002579,9.59e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!6.31e-10!83;UBERON:0002329!6.31e-10!83;UBERON:0003077!6.31e-10!83;UBERON:0003059!6.31e-10!83;UBERON:0007282!6.31e-10!83;UBERON:0009618!6.31e-10!83;UBERON:0007285!6.31e-10!83;UBERON:0000475!2.09e-09!365;UBERON:0007100!2.23e-09!27;UBERON:0004290!1.23e-07!70;UBERON:0000948!1.73e-07!24;UBERON:0005498!1.73e-07!24;UBERON:0004140!1.73e-07!24;UBERON:0009881!1.73e-07!24;UBERON:0004141!1.73e-07!24;UBERON:0003084!1.73e-07!24;UBERON:0007005!1.73e-07!24;UBERON:0004139!1.73e-07!24;UBERON:0004291!1.73e-07!24;UBERON:0003102!2.07e-07!95;UBERON:0000481!2.65e-07!347;UBERON:0000468!3.36e-07!659|ontology_enrichment_uberon_v019=UBERON:0003688;1.12e-12;6!UBERON:0002358;1.12e-12;6!UBERON:0003684;1.12e-12;6!UBERON:0001178;1.12e-12;6!UBERON:0007100;2.94e-10;25!UBERON:0004457;3.58e-08;9!UBERON:0000042;3.58e-08;9!UBERON:0000075;2.38e-07;16!UBERON:0001434;3.34e-07;36!UBERON:0011135;5.34e-07;5!UBERON:0002216;5.34e-07;5!UBERON:0011134;5.34e-07;5!UBERON:0002209;5.34e-07;5!UBERON:0002213;5.34e-07;5!UBERON:0007844;5.34e-07;5!UBERON:0011138;5.34e-07;5!UBERON:0001130;5.34e-07;5!UBERON:0001066;5.34e-07;5!UBERON:0001468;5.34e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.40e-12,6;UBERON:0002358,1.40e-12,6;UBERON:0003684,1.40e-12,6;UBERON:0001178,1.40e-12,6;UBERON:0007100,6.77e-11,27;UBERON:0003102,2.00e-08,99;UBERON:0000075,2.85e-07,16;UBERON:0000948,3.85e-07,24;UBERON:0005498,3.85e-07,24;UBERON:0004140,3.85e-07,24;UBERON:0009881,3.85e-07,24;UBERON:0004141,3.85e-07,24;UBERON:0003084,3.85e-07,24;UBERON:0007005,3.85e-07,24;UBERON:0004139,3.85e-07,24;UBERON:0004291,3.85e-07,24|phase1_expression=1.45342703416445,1.2846031433459,1.69145284915165,6.00439790118782,1.34088328328186,1.74467704820074,2.53299878168311,0,0.783556884599516,0.245733936501509,0,0,0,1.11389717664042,1.32558950291166,0.672325146451775,0,0,0,0.369363174230364,0.204000691244253,0.313454721478088,0.286235987131057,0.684372125364421,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0.361439152384566,0.50133791063589,1.15877215168659,0,0.486634870302636,0.283604451492204,0.665188192387692,0.527008714158756,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0.694281003215189,0,0.838998872419812,0.550236083880135,0.208994966536811,0,0,0,0,0,0,0,0,0.446498641420399,0,0.225222960966644,0,0,0,0,0,0,0.993943903390637,0.379891534993739,1.98613771219828,1.43418310374407,0,0.560677600142307,2.1349799145941,0.49333509683432,2.48968828319813,1.48181739276657,0.980771418680752,0.151357427644931,0.576175924479999,0.468642863667593,0.312160076830321,0,0.597794722207204,0.352303495931295,0.323745888736263,0.280901613404497,1.63323337003915,1.10550885580591,2.16984140469107,0,0.494533858557114,0,1.43723628363248,0.673344455816265,1.7516592782075,2.49357703935765,2.19488810440419,0,1.35214253015937,0.226864366320042,1.4351170855109,0.85422955527427,0,2.70081986475962,1.33968288009971,2.83404594050192,0.744467425326359,1.18143432568886,0.584622030967192,2.77677151668526,1.01254888506529,0.646584227275248,1.06502877754984,1.20902517873168,0.847802961552438,0.193260853163297,0.272746120590835,0,0.243947412259191,0.397589304964456,0.116193942869518,0.207322110030741,0.252320850875628,0,0,1.92972281457866,1.38134921352481,2.3218396401599,0.721879481669586,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0.977424915930974,0,0,0.231860809950154,0.821860859650752,0,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0.425325291727159,0.447792613514241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.22001485746285,0.904902010304444,3.57656445851882,0.845302752556,0.26593811658487,0,0,0,0.532844358032199,0.428933980974443,0.542621605391443,0,0,1.42156779497018,0,0.301439377059586,0.871533458600294,0.99972991182057,0,0,0,0.239624855491583,0,0,0.579125226670317,0.821905290201534,0.537182889719687,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,1.10422342547226,2.00068208423871,0.271265023699736,1.03985430765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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=91624 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29557 | |||
|TSSclassifier=W | |||
|UniProt=E7ETM8 | |||
|association_with_transcript=-216bp_to_ENST00000401035_5end | |||
|description=CAGE_peak_8_at_NEXN_5end | |||
|id=chr1:78353949..78353981,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.10e-23!180;CL:0000057!2.89e-17!75;CL:0002620!9.35e-08!23;CL:0000136!3.38e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002334;8.73e-08;12!CL:0002615;2.99e-07;3!CL:0000136;3.50e-07;13!CL:0002580;4.44e-07;3!CL:0002579;4.44e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.17e-15,76;CL:0002334,1.01e-07,12;CL:0002615,1.68e-07,3;CL:0002580,3.99e-07,3;CL:0002579,9.59e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.31e-10!83;UBERON:0002329!6.31e-10!83;UBERON:0003077!6.31e-10!83;UBERON:0003059!6.31e-10!83;UBERON:0007282!6.31e-10!83;UBERON:0009618!6.31e-10!83;UBERON:0007285!6.31e-10!83;UBERON:0000475!2.09e-09!365;UBERON:0007100!2.23e-09!27;UBERON:0004290!1.23e-07!70;UBERON:0000948!1.73e-07!24;UBERON:0005498!1.73e-07!24;UBERON:0004140!1.73e-07!24;UBERON:0009881!1.73e-07!24;UBERON:0004141!1.73e-07!24;UBERON:0003084!1.73e-07!24;UBERON:0007005!1.73e-07!24;UBERON:0004139!1.73e-07!24;UBERON:0004291!1.73e-07!24;UBERON:0003102!2.07e-07!95;UBERON:0000481!2.65e-07!347;UBERON:0000468!3.36e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.12e-12;6!UBERON:0002358;1.12e-12;6!UBERON:0003684;1.12e-12;6!UBERON:0001178;1.12e-12;6!UBERON:0007100;2.94e-10;25!UBERON:0004457;3.58e-08;9!UBERON:0000042;3.58e-08;9!UBERON:0000075;2.38e-07;16!UBERON:0001434;3.34e-07;36!UBERON:0011135;5.34e-07;5!UBERON:0002216;5.34e-07;5!UBERON:0011134;5.34e-07;5!UBERON:0002209;5.34e-07;5!UBERON:0002213;5.34e-07;5!UBERON:0007844;5.34e-07;5!UBERON:0011138;5.34e-07;5!UBERON:0001130;5.34e-07;5!UBERON:0001066;5.34e-07;5!UBERON:0001468;5.34e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.40e-12,6;UBERON:0002358,1.40e-12,6;UBERON:0003684,1.40e-12,6;UBERON:0001178,1.40e-12,6;UBERON:0007100,6.77e-11,27;UBERON:0003102,2.00e-08,99;UBERON:0000075,2.85e-07,16;UBERON:0000948,3.85e-07,24;UBERON:0005498,3.85e-07,24;UBERON:0004140,3.85e-07,24;UBERON:0009881,3.85e-07,24;UBERON:0004141,3.85e-07,24;UBERON:0003084,3.85e-07,24;UBERON:0007005,3.85e-07,24;UBERON:0004139,3.85e-07,24;UBERON:0004291,3.85e-07,24 | |||
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| |||
|short_description=p8@NEXN | |||
}} |
Revision as of 06:47, 12 September 2013
Short description: | p8@NEXN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_NEXN_5end |
Coexpression cluster: | NA |
Association with transcript: | -216bp_to_ENST00000401035_5end |
EntrezGene: | NEXN |
HGNC: | 29557 |
UniProt: | E7ETM8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.17e-15 | 76 |
preadipocyte | 1.01e-07 | 12 |
adipocyte of omentum tissue | 1.68e-07 | 3 |
preadipocyte of the breast | 3.99e-07 | 3 |
omentum preadipocyte | 9.59e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.40e-12 | 6 |
peritoneum | 1.40e-12 | 6 |
abdominal cavity | 1.40e-12 | 6 |
visceral peritoneum | 1.40e-12 | 6 |
primary circulatory organ | 6.77e-11 | 27 |
surface structure | 2.00e-08 | 99 |
subdivision of skeletal system | 2.85e-07 | 16 |
heart | 3.85e-07 | 24 |
primitive heart tube | 3.85e-07 | 24 |
primary heart field | 3.85e-07 | 24 |
anterior lateral plate mesoderm | 3.85e-07 | 24 |
heart tube | 3.85e-07 | 24 |
heart primordium | 3.85e-07 | 24 |
cardiac mesoderm | 3.85e-07 | 24 |
cardiogenic plate | 3.85e-07 | 24 |
heart rudiment | 3.85e-07 | 24 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.