FFCP PHASE1:Hg19::chr1:42501805..42501830,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1|description=CAGE_peak_at_chr1:42501805..42501830,+|id=chr1:42501805..42501830,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002567;3.63e-21;3!CL:0002593;4.34e-09;2!CL:0000047;6.42e-09;2!CL:0000650;6.42e-09;2!CL:1000500;6.42e-09;2!CL:1000618;6.42e-09;2!CL:1001318;6.42e-09;2!CL:0002173;6.42e-09;2!CL:0000148;5.26e-07;10|ontology_enrichment_celltype_v019_2=CL:0002567,3.28e-21,3;CL:0002593,4.34e-09,2;CL:0000650,8.74e-09,2;CL:1000500,8.74e-09,2;CL:1000618,8.74e-09,2;CL:1001318,8.74e-09,2;CL:0002173,8.74e-09,2;CL:0000047,1.47e-08,8;CL:0000148,5.11e-07,10;CL:0000541,5.11e-07,10|ontology_enrichment_development_v019=UBERON:0009117;3.33e-07;10!UBERON:0005564;3.33e-07;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!2.01e-10!86;UBERON:0001017!4.68e-10!82;UBERON:0000073!1.06e-08!94;UBERON:0001016!1.06e-08!94;UBERON:0003056!2.55e-08!61;UBERON:0000955!1.29e-07!69;UBERON:0006238!1.29e-07!69;UBERON:0002780!1.41e-07!41;UBERON:0001890!1.41e-07!41;UBERON:0006240!1.41e-07!41;UBERON:0003075!2.33e-07!86;UBERON:0007284!2.33e-07!86;UBERON:0002616!2.90e-07!59;UBERON:0003080!3.11e-07!42;UBERON:0001049!3.62e-07!57;UBERON:0005068!3.62e-07!57;UBERON:0006241!3.62e-07!57;UBERON:0007135!3.62e-07!57;UBERON:0002020!8.90e-07!34;UBERON:0003528!8.90e-07!34|ontology_enrichment_uberon_v019=UBERON:0002456;4.34e-09;2!UBERON:0002148;6.42e-09;2!UBERON:0006331;6.42e-09;2!UBERON:0009662;6.42e-09;2!UBERON:0003567;6.42e-09;2!UBERON:0003838;6.42e-09;2!UBERON:0003586;6.42e-09;2!UBERON:0005169;6.42e-09;2!UBERON:0002321;6.42e-09;2!UBERON:0005215;6.42e-09;2!UBERON:0002303;6.42e-09;2!UBERON:0002319;6.42e-09;2!UBERON:0000473;8.61e-09;8|ontology_enrichment_uberon_v019_2=UBERON:0002456,4.34e-09,2;UBERON:0002148,7.49e-09,2;UBERON:0006331,7.49e-09,2;UBERON:0009662,7.49e-09,2;UBERON:0000473,8.62e-09,8;UBERON:0003567,8.74e-09,2;UBERON:0003838,8.74e-09,2;UBERON:0003586,8.74e-09,2;UBERON:0005169,8.74e-09,2;UBERON:0002321,8.74e-09,2;UBERON:0005215,8.74e-09,2;UBERON:0002303,8.74e-09,2;UBERON:0002319,8.74e-09,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0.123766352960047,0,0,0,0,0,0,0.204000691244253,0,0.85870796139317,0.958120975510189,0.125542639594803,0.152826811495903,0.410502947249729,0.314843125254717,0.393364276848904,0,0.154816123316076,0,0,0,0.0774672005803016,0.284338464974843,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0.639337125799041,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0.419317291016752,0,0,0,0,0,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0,0,0,0,0.189069634328136,0.665188192387692,0.263504357079378,3.40545596294053,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0.264818361626438,0,0.354668382198357,0.560677600142307,0,0.49333509683432,0,0.134710672069688,0.163461903113459,0.151357427644931,0.576175924479999,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0.30648779579902,0.300476117813194,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0.339121184620975,0,0,0,0.243947412259191,0,0,0.207322110030741,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0.435758888184812,0,0.134831308160164,0.392442930250692,0,0,0,1.2347220339942,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0.34779121492523,0.234817388471643,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0.088048434013226,0,0.144119953416961,0,0.063497894292169,0,1.17217447210047,1.71072446022705,0.102827492703324,0,0,0,0,0.07333828582095,0,0,0.845302752556,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0,0,0.215627574859517,0,0.254094624222463,1.30139853857622,0,0.335032530668698,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0.195801157462741,0,0,0,0.106727557803444,0,0,0,0,0,0.280660094433074,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0.116210378459959,0,0,0,0,0.182091168006717,0,0.902399225814824,0,0,0,0,0,0,0,0,1.08378575017541,0,0.254876273045038,0,0.223874754722178,0,0,0.256450125116389,0.328014645699706,0,0,0.0915694648183434,0.165018999841176,0,0,0,0,0.154048617114644,0.460511024178389,0,0,0,0,0.267096106940212,0,0,0,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0,0,0,0.636406495851874,0,0.179872457583315,0,0.117812402345686,0,0,0.421258456238981,0.48763373908959,0,2.11300293513511,0,0,0,0.551365343546124,0,0,0,0,0.202910376962704,0.30982349809975,0.563391205064483,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.793125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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_at_chr1:42501805..42501830,+ | |||
|id=chr1:42501805..42501830,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002567;3.63e-21;3!CL:0002593;4.34e-09;2!CL:0000047;6.42e-09;2!CL:0000650;6.42e-09;2!CL:1000500;6.42e-09;2!CL:1000618;6.42e-09;2!CL:1001318;6.42e-09;2!CL:0002173;6.42e-09;2!CL:0000148;5.26e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,3.28e-21,3;CL:0002593,4.34e-09,2;CL:0000650,8.74e-09,2;CL:1000500,8.74e-09,2;CL:1000618,8.74e-09,2;CL:1001318,8.74e-09,2;CL:0002173,8.74e-09,2;CL:0000047,1.47e-08,8;CL:0000148,5.11e-07,10;CL:0000541,5.11e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.33e-07;10!UBERON:0005564;3.33e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.01e-10!86;UBERON:0001017!4.68e-10!82;UBERON:0000073!1.06e-08!94;UBERON:0001016!1.06e-08!94;UBERON:0003056!2.55e-08!61;UBERON:0000955!1.29e-07!69;UBERON:0006238!1.29e-07!69;UBERON:0002780!1.41e-07!41;UBERON:0001890!1.41e-07!41;UBERON:0006240!1.41e-07!41;UBERON:0003075!2.33e-07!86;UBERON:0007284!2.33e-07!86;UBERON:0002616!2.90e-07!59;UBERON:0003080!3.11e-07!42;UBERON:0001049!3.62e-07!57;UBERON:0005068!3.62e-07!57;UBERON:0006241!3.62e-07!57;UBERON:0007135!3.62e-07!57;UBERON:0002020!8.90e-07!34;UBERON:0003528!8.90e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002456;4.34e-09;2!UBERON:0002148;6.42e-09;2!UBERON:0006331;6.42e-09;2!UBERON:0009662;6.42e-09;2!UBERON:0003567;6.42e-09;2!UBERON:0003838;6.42e-09;2!UBERON:0003586;6.42e-09;2!UBERON:0005169;6.42e-09;2!UBERON:0002321;6.42e-09;2!UBERON:0005215;6.42e-09;2!UBERON:0002303;6.42e-09;2!UBERON:0002319;6.42e-09;2!UBERON:0000473;8.61e-09;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002456,4.34e-09,2;UBERON:0002148,7.49e-09,2;UBERON:0006331,7.49e-09,2;UBERON:0009662,7.49e-09,2;UBERON:0000473,8.62e-09,8;UBERON:0003567,8.74e-09,2;UBERON:0003838,8.74e-09,2;UBERON:0003586,8.74e-09,2;UBERON:0005169,8.74e-09,2;UBERON:0002321,8.74e-09,2;UBERON:0005215,8.74e-09,2;UBERON:0002303,8.74e-09,2;UBERON:0002319,8.74e-09,2 | |||
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| |||
|short_description=p@chr1:42501805..42501830,+ | |||
}} |
Revision as of 05:46, 12 September 2013
Short description: | p@chr1:42501805..42501830, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:42501805..42501830, + |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 3.28e-21 | 3 |
smooth muscle cell of the internal thoracic artery | 4.34e-09 | 2 |
mesangial cell | 8.74e-09 | 2 |
kidney interstitial cell | 8.74e-09 | 2 |
juxtaglomerular complex cell | 8.74e-09 | 2 |
renal interstitial pericyte | 8.74e-09 | 2 |
extraglomerular mesangial cell | 8.74e-09 | 2 |
neuronal stem cell | 1.47e-08 | 8 |
melanocyte | 5.11e-07 | 10 |
melanoblast | 5.11e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
internal thoracic artery | 4.34e-09 | 2 |
locus ceruleus | 7.49e-09 | 2 |
brainstem nucleus | 7.49e-09 | 2 |
hindbrain nucleus | 7.49e-09 | 2 |
testis | 8.62e-09 | 8 |
abdomen connective tissue | 8.74e-09 | 2 |
abdominal segment connective tissue | 8.74e-09 | 2 |
trunk connective tissue | 8.74e-09 | 2 |
interstitial tissue | 8.74e-09 | 2 |
extraglomerular mesangium | 8.74e-09 | 2 |
kidney interstitium | 8.74e-09 | 2 |
juxtaglomerular apparatus | 8.74e-09 | 2 |
mesangium | 8.74e-09 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.