FFCP PHASE1:Hg19::chr1:13910479..13910490,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10630|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29602|TSSclassifier=S|UniProt=E7ETC6|association_with_transcript=-97bp_to_ENST00000509009_5end|description=CAGE_peak_2_at_PDPN_5end|id=chr1:13910479..13910490,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002166;9.79e-11;3!CL:0000135;1.45e-09;3!CL:0002621;1.45e-09;3!CL:0000388;1.45e-09;3!CL:0000622;2.23e-09;5!CL:0002619;3.36e-09;3!CL:0000154;8.01e-08;6!CL:0002195;3.36e-07;2!CL:0002571;3.36e-07;2|ontology_enrichment_celltype_v019_2=CL:0002166,8.02e-11,3;CL:0000622,2.10e-09,5;CL:0002621,2.28e-09,3;CL:0000135,2.64e-09,3;CL:0000388,2.64e-09,3;CL:0002619,3.24e-09,3;CL:0000154,7.62e-08,6;CL:0002195,2.18e-07,2;CL:0002571,2.18e-07,2;CL:0000317,5.03e-07,2;CL:1000448,5.03e-07,2;CL:0002308,5.03e-07,2;CL:0002140,5.03e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!1.27e-08!14|ontology_enrichment_disease_v019=DOID:2394;1.01e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,8.99e-08,14|ontology_enrichment_uberon=UBERON:0000468!8.35e-10!659;UBERON:0000467!1.90e-09!625;UBERON:0000480!2.42e-09!626;UBERON:0004121!4.70e-09!169;UBERON:0000922!6.65e-09!612;UBERON:0000924!6.90e-09!173;UBERON:0006601!6.90e-09!173;UBERON:0000033!2.19e-08!123;UBERON:0000153!2.26e-08!129;UBERON:0007811!2.26e-08!129;UBERON:0000923!2.41e-08!604;UBERON:0005291!2.41e-08!604;UBERON:0006598!2.41e-08!604;UBERON:0002532!2.41e-08!604;UBERON:0002050!3.02e-08!605;UBERON:0005423!3.02e-08!605;UBERON:0005743!2.96e-07!86;UBERON:0000062!4.59e-07!511;UBERON:0000064!8.64e-07!219;UBERON:0003075!9.25e-07!86;UBERON:0007284!9.25e-07!86|ontology_enrichment_uberon_v019=UBERON:0007846;1.45e-09;3!UBERON:0000043;1.45e-09;3!UBERON:0007845;1.45e-09;3!UBERON:0001949;1.45e-09;3!UBERON:0003688;1.95e-08;6!UBERON:0002358;1.95e-08;6!UBERON:0003684;1.95e-08;6!UBERON:0001178;1.95e-08;6!UBERON:0004457;2.95e-08;9!UBERON:0000042;2.95e-08;9!UBERON:0000486;3.38e-08;12!UBERON:0001708;3.91e-08;4!UBERON:0008895;3.91e-08;4!UBERON:0003929;4.15e-07;7!UBERON:0005406;4.78e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0001949,2.28e-09,3;UBERON:0007846,2.64e-09,3;UBERON:0000043,2.64e-09,3;UBERON:0007845,2.64e-09,3;UBERON:0003688,1.37e-08,6;UBERON:0002358,1.37e-08,6;UBERON:0003684,1.37e-08,6;UBERON:0001178,1.37e-08,6;UBERON:0001708,3.38e-08,4;UBERON:0008895,3.38e-08,4;UBERON:0005406,2.55e-07,2;UBERON:0002419,5.03e-07,2;UBERON:0007771,5.03e-07,2;UBERON:0003297,5.03e-07,2;UBERON:0001821,5.03e-07,2;UBERON:0003487,5.03e-07,2;UBERON:0001820,5.03e-07,2;UBERON:0005089,5.03e-07,2;UBERON:0005088,5.03e-07,2|phase1_expression=0.181678379270557,0.642301571672949,5.07435854745496,0,2.68176656656373,1.74467704820074,0,0,0.783556884599516,0.245733936501509,0,1.74753097704138,0.791300934685361,0,0,0,0,0.730310090387373,0.487932798790507,0.61560529038394,0.204000691244253,0.313454721478088,1.14494394852423,0.547497700291537,0.125542639594803,0,0,0,0,0,0,2.75826367343678,0.90361775633475,0,0,0,0,0,0,0,1.11957737119962,1.94336199611388,1.28787783817093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0.361439152384566,0.50133791063589,0.579386075843295,11.9292892057665,7.78615792484217,0.0945348171640679,0,0,0.0654895377488563,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,5.23678112241891,2.28081631715554,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0.397227542439656,0.286836620748814,0,0.560677600142307,1.06748995729705,0,0.622422070799533,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.103325781175765,1.18800285728205,0.494533858557114,0,0,0,0,0,0.438977620880838,0,0.45071417671979,0,0,0.427114777637135,0,0,0.309157587715317,0,0,0,0.0974370051611986,0,0.184099797284599,0.484938170456436,0,0,0,2.89891279744945,1.09098448236334,1.14721838155602,0.365921118388786,0,0.348581828608555,0.10366105501537,0.252320850875628,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,0,0,0,0,0,0,0.343135620597051,0.548751427043128,0,0.603173834469785,1.11106134190236,0,0,0,0.115930404975077,0.234817388471643,3.89789408954899,2.77791307545966,2.09279567458058,0,0,0,0.234004265139238,0.148631162288728,5.62403003920662,4.87148171776693,2.83550194484773,0.358234090811393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0.517086863031111,0,0,1.86156681609409,0,0,0,0,3.86040582876998,0,0,0,1.77695974371273,0,2.1100756394171,0.871533458600294,1.3996218765488,0,0,0,0,0,0,0,0,0.716243852959582,0,0,0,0,2.28685161800217,0,0.773288812777695,0.837581326671744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,0,1.5119514666484,0.248107807818777,0,0,1.79394808957981,1.53512174720011,0.64341568457443,2.96836132889982,0,0,0.246381468041427,0,0,0,2.6065841139427,0,1.37777337797528,0.364182336013434,1.31124414959424,0,0.0770153371044148,0,0,0.2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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10630 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29602 | |||
|TSSclassifier=S | |||
|UniProt=E7ETC6 | |||
|association_with_transcript=-97bp_to_ENST00000509009_5end | |||
|description=CAGE_peak_2_at_PDPN_5end | |||
|id=chr1:13910479..13910490,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002166;9.79e-11;3!CL:0000135;1.45e-09;3!CL:0002621;1.45e-09;3!CL:0000388;1.45e-09;3!CL:0000622;2.23e-09;5!CL:0002619;3.36e-09;3!CL:0000154;8.01e-08;6!CL:0002195;3.36e-07;2!CL:0002571;3.36e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,8.02e-11,3;CL:0000622,2.10e-09,5;CL:0002621,2.28e-09,3;CL:0000135,2.64e-09,3;CL:0000388,2.64e-09,3;CL:0002619,3.24e-09,3;CL:0000154,7.62e-08,6;CL:0002195,2.18e-07,2;CL:0002571,2.18e-07,2;CL:0000317,5.03e-07,2;CL:1000448,5.03e-07,2;CL:0002308,5.03e-07,2;CL:0002140,5.03e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.27e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.01e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.99e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000468!8.35e-10!659;UBERON:0000467!1.90e-09!625;UBERON:0000480!2.42e-09!626;UBERON:0004121!4.70e-09!169;UBERON:0000922!6.65e-09!612;UBERON:0000924!6.90e-09!173;UBERON:0006601!6.90e-09!173;UBERON:0000033!2.19e-08!123;UBERON:0000153!2.26e-08!129;UBERON:0007811!2.26e-08!129;UBERON:0000923!2.41e-08!604;UBERON:0005291!2.41e-08!604;UBERON:0006598!2.41e-08!604;UBERON:0002532!2.41e-08!604;UBERON:0002050!3.02e-08!605;UBERON:0005423!3.02e-08!605;UBERON:0005743!2.96e-07!86;UBERON:0000062!4.59e-07!511;UBERON:0000064!8.64e-07!219;UBERON:0003075!9.25e-07!86;UBERON:0007284!9.25e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;1.45e-09;3!UBERON:0000043;1.45e-09;3!UBERON:0007845;1.45e-09;3!UBERON:0001949;1.45e-09;3!UBERON:0003688;1.95e-08;6!UBERON:0002358;1.95e-08;6!UBERON:0003684;1.95e-08;6!UBERON:0001178;1.95e-08;6!UBERON:0004457;2.95e-08;9!UBERON:0000042;2.95e-08;9!UBERON:0000486;3.38e-08;12!UBERON:0001708;3.91e-08;4!UBERON:0008895;3.91e-08;4!UBERON:0003929;4.15e-07;7!UBERON:0005406;4.78e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,2.28e-09,3;UBERON:0007846,2.64e-09,3;UBERON:0000043,2.64e-09,3;UBERON:0007845,2.64e-09,3;UBERON:0003688,1.37e-08,6;UBERON:0002358,1.37e-08,6;UBERON:0003684,1.37e-08,6;UBERON:0001178,1.37e-08,6;UBERON:0001708,3.38e-08,4;UBERON:0008895,3.38e-08,4;UBERON:0005406,2.55e-07,2;UBERON:0002419,5.03e-07,2;UBERON:0007771,5.03e-07,2;UBERON:0003297,5.03e-07,2;UBERON:0001821,5.03e-07,2;UBERON:0003487,5.03e-07,2;UBERON:0001820,5.03e-07,2;UBERON:0005089,5.03e-07,2;UBERON:0005088,5.03e-07,2 | |||
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| |||
|short_description=p2@PDPN | |||
}} |
Revision as of 23:58, 11 September 2013
Short description: | p2@PDPN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_PDPN_5end |
Coexpression cluster: | NA |
Association with transcript: | -97bp_to_ENST00000509009_5end |
EntrezGene: | PDPN |
HGNC: | 29602 |
UniProt: | E7ETC6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 8.02e-11 | 3 |
acinar cell | 2.10e-09 | 5 |
gingival epithelial cell | 2.28e-09 | 3 |
fibrocyte | 2.64e-09 | 3 |
tendon cell | 2.64e-09 | 3 |
adult endothelial progenitor cell | 3.24e-09 | 3 |
protein secreting cell | 7.62e-08 | 6 |
hepatic stem cell | 2.18e-07 | 2 |
hepatic mesenchymal stem cell | 2.18e-07 | 2 |
sebum secreting cell | 5.03e-07 | 2 |
epithelial cell of sweat gland | 5.03e-07 | 2 |
epithelial cell of skin gland | 5.03e-07 | 2 |
acinar cell of sebaceous gland | 5.03e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 2.28e-09 | 3 |
dense regular connective tissue | 2.64e-09 | 3 |
tendon | 2.64e-09 | 3 |
regular connective tissue | 2.64e-09 | 3 |
omentum | 1.37e-08 | 6 |
peritoneum | 1.37e-08 | 6 |
abdominal cavity | 1.37e-08 | 6 |
visceral peritoneum | 1.37e-08 | 6 |
jaw skeleton | 3.38e-08 | 4 |
splanchnocranium | 3.38e-08 | 4 |
perirenal fat | 2.55e-07 | 2 |
skin gland | 5.03e-07 | 2 |
epidermis gland | 5.03e-07 | 2 |
gland of integumental system | 5.03e-07 | 2 |
sebaceous gland | 5.03e-07 | 2 |
skin sebaceous gland | 5.03e-07 | 2 |
sweat gland | 5.03e-07 | 2 |
sweat gland placode | 5.03e-07 | 2 |
sebaceous gland placode | 5.03e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.99e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.