FFCP PHASE1:Hg19::chr1:11865954..11865976,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4524|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7436|TSSclassifier=S|UniProt=Q5SNW5|association_with_transcript=16bp_to_ENST00000418034_5end|description=CAGE_peak_5_at_MTHFR_5end|id=chr1:11865954..11865976,-|ontology_enrichment_celltype=CL:0002057!3.62e-14!42;CL:0000860!8.84e-13!45;CL:0000763!2.26e-09!112;CL:0000049!2.26e-09!112;CL:0000557!2.96e-09!71;CL:0000839!9.01e-08!70;CL:0000766!1.12e-07!76;CL:0002009!1.14e-07!65;CL:0000223!4.75e-07!59;CL:0002194!6.78e-07!63;CL:0000576!6.78e-07!63;CL:0000040!6.78e-07!63;CL:0000559!6.78e-07!63|ontology_enrichment_celltype_v019=CL:0000860;4.48e-14;33!CL:0002057;4.48e-14;33!CL:0000473;6.94e-10;39!CL:0000234;6.94e-10;39!CL:0000576;1.98e-08;48|ontology_enrichment_celltype_v019_2=CL:0000860,9.65e-15,42;CL:0002057,9.65e-15,42;CL:0000473,2.49e-12,48;CL:0000234,2.49e-12,48;CL:0000557,2.23e-11,67;CL:0000763,3.51e-11,108;CL:0000049,3.51e-11,108;CL:0000766,2.30e-09,72;CL:0002009,2.37e-09,61;CL:0000839,4.12e-09,66;CL:0002194,2.50e-08,59;CL:0000576,2.50e-08,59;CL:0000040,2.50e-08,59;CL:0000559,2.50e-08,59|ontology_enrichment_development_v019=CL:0002057;5.77e-12;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!3.99e-10!115;UBERON:0001474!1.91e-09!86;UBERON:0002371!2.44e-08!80;UBERON:0004765!4.30e-07!101;UBERON:0001434!4.30e-07!101;UBERON:0000926!9.73e-07!448;UBERON:0004120!9.73e-07!448;UBERON:0006603!9.73e-07!448|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0001474,2.36e-11,82;UBERON:0002371,2.59e-10,76;UBERON:0004765,6.77e-10,90;UBERON:0002405,1.49e-09,93;UBERON:0001434,1.28e-08,100;UBERON:0002193,1.45e-07,108;UBERON:0002390,5.97e-07,98;UBERON:0003061,5.97e-07,98|phase1_expression=0.363356758541113,0.642301571672949,0.563817616383885,1.0007329835313,1.78784437770915,1.74467704820074,0,0.631719873426831,2.35067065379855,0.245733936501509,1.39560233594486,0.655324116390517,1.58260186937072,0.37129905888014,2.31978163009541,0,0,0,0,1.47745269692145,1.22400414746552,0.940364164434263,1.14494394852423,0.684372125364421,0.753255837568817,0.764134057479513,0.246301768349837,0.629686250509434,0.786728553697808,0.383829398097213,1.70297735647684,3.67768489791571,1.204823675113,2.58827807116751,1.23947520928483,0.284338464974843,0.293600439334847,2.76997704265939,2.00544447470142,3.68918480216948,0,0.647787332037959,0.515151135268373,2.18097358169347,3.77875943688809,2.18325655069035,1.85943229524548,2.46700732813095,4.02618282163635,5.75384784644301,6.91633907628572,5.20260905754887,2.41321976515633,2.5819387343353,4.06279459783025,2.44715041405386,2.45615535052061,1.57306439111559,2.14258724659632,1.28371610830437,2.55734850319616,4.61791820261403,4.9865914405408,6.81959600852311,1.16083695451434,1.13477044938228,0.622822248995575,5.7787193009051,4.69334626578181,6.5156653411535,1.21079900526674,0.736555271975129,0.949387162322653,0.845021145247767,2.12604299965044,0.838634582033504,2.47122988522289,2.10247649978109,0.964353520182481,1.42506371870624,0.59675003159727,1.0959849225878,1.75996244461323,0,0,1.28019066769952,0,0.574752439954483,0.661044872784862,0,0.569212969109448,0.587237189370939,1.52909291250092,0,1.12101712596307,1.05353633910031,0.196709770113833,0.393010762749165,0.205601498999509,0,0.32592226663359,0,0,0.111410456885174,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0.226618685395132,0,0,0.253019692019503,0,0,0,0.602300476311091,0.255973222308837,0,0.473554504088034,0,0.403213486449465,0.267440195783507,0.289648807765598,0,1.34140171940727,0.255725123687061,0.361439152384566,1.00267582127178,1.59331170856906,0.795285947051099,2.43317435151318,0.661743720148475,0.886917589850256,0.790513071238134,1.70272798147026,0.728590576585084,0.741568885568859,0.649094787309367,0.522389211897802,1.46253756570752,0.238490624305342,0.571994910780128,0,0.79504962946682,0,1.38856200643038,0,0.419499436209906,1.6507082516404,0.835979866147242,0.516833518338658,0.71153252537342,2.00832367658802,1.61131726843659,2.28081631715554,2.4406205754817,1.47065232138347,1.62028389576352,1.25019619597712,0.22452937262617,0.563057402416611,3.06633274931766,0.949265659568129,0.732806975721629,7.9068250461638,0,1.74437620857014,0.993943903390637,0.506522046658319,2.25095607382472,0.860509862246441,1.06400514659507,0.560677600142307,3.20246987189115,0.24666754841716,1.24484414159907,0.808264032418128,0.653847612453835,2.4217188423189,1.72852777344,0,0.312160076830321,0,0,0.117434498643765,0,0.561803226808994,0.816616685019573,0.491337269247072,0.516628905878827,0,1.48360157567134,0.910161361938026,1.43723628363248,0.168336113954066,0.375355559615893,0,0,0.612975591598039,1.65261864797256,0.226864366320042,1.25572744982203,0.640672166455702,1.27159140695737,0.600182192168805,1.23663035086127,3.34932702059318,1.11670113798954,0.168776332241266,0.389748020644795,1.7670364197088,0.552299391853796,0.80823028409406,0.71001918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8380132536469,1.43444410785353,1.99596213927608,0.814032686109745,1.06727345877715,0,1.97615444634491,0,0.977931553462932,0,1.33151354837103,0.402547587182052,0.320568492303233|short_description=p5@MTHFR}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=4524 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7436 | |||
|TSSclassifier=S | |||
|UniProt=Q5SNW5 | |||
|association_with_transcript=16bp_to_ENST00000418034_5end | |||
|description=CAGE_peak_5_at_MTHFR_5end | |||
|id=chr1:11865954..11865976,- | |||
|ontology_enrichment_celltype=CL:0002057!3.62e-14!42;CL:0000860!8.84e-13!45;CL:0000763!2.26e-09!112;CL:0000049!2.26e-09!112;CL:0000557!2.96e-09!71;CL:0000839!9.01e-08!70;CL:0000766!1.12e-07!76;CL:0002009!1.14e-07!65;CL:0000223!4.75e-07!59;CL:0002194!6.78e-07!63;CL:0000576!6.78e-07!63;CL:0000040!6.78e-07!63;CL:0000559!6.78e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.48e-14;33!CL:0002057;4.48e-14;33!CL:0000473;6.94e-10;39!CL:0000234;6.94e-10;39!CL:0000576;1.98e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.65e-15,42;CL:0002057,9.65e-15,42;CL:0000473,2.49e-12,48;CL:0000234,2.49e-12,48;CL:0000557,2.23e-11,67;CL:0000763,3.51e-11,108;CL:0000049,3.51e-11,108;CL:0000766,2.30e-09,72;CL:0002009,2.37e-09,61;CL:0000839,4.12e-09,66;CL:0002194,2.50e-08,59;CL:0000576,2.50e-08,59;CL:0000040,2.50e-08,59;CL:0000559,2.50e-08,59 | |||
|ontology_enrichment_development_v019=CL:0002057;5.77e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!3.99e-10!115;UBERON:0001474!1.91e-09!86;UBERON:0002371!2.44e-08!80;UBERON:0004765!4.30e-07!101;UBERON:0001434!4.30e-07!101;UBERON:0000926!9.73e-07!448;UBERON:0004120!9.73e-07!448;UBERON:0006603!9.73e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,2.36e-11,82;UBERON:0002371,2.59e-10,76;UBERON:0004765,6.77e-10,90;UBERON:0002405,1.49e-09,93;UBERON:0001434,1.28e-08,100;UBERON:0002193,1.45e-07,108;UBERON:0002390,5.97e-07,98;UBERON:0003061,5.97e-07,98 | |||
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| |||
|short_description=p5@MTHFR | |||
}} |
Revision as of 23:47, 11 September 2013
Short description: | p5@MTHFR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_MTHFR_5end |
Coexpression cluster: | NA |
Association with transcript: | 16bp_to_ENST00000418034_5end |
EntrezGene: | MTHFR |
HGNC: | 7436 |
UniProt: | Q5SNW5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 9.65e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.65e-15 | 42 |
defensive cell | 2.49e-12 | 48 |
phagocyte | 2.49e-12 | 48 |
granulocyte monocyte progenitor cell | 2.23e-11 | 67 |
myeloid cell | 3.51e-11 | 108 |
common myeloid progenitor | 3.51e-11 | 108 |
myeloid leukocyte | 2.30e-09 | 72 |
macrophage dendritic cell progenitor | 2.37e-09 | 61 |
myeloid lineage restricted progenitor cell | 4.12e-09 | 66 |
monopoietic cell | 2.50e-08 | 59 |
monocyte | 2.50e-08 | 59 |
monoblast | 2.50e-08 | 59 |
promonocyte | 2.50e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
bone element | 2.36e-11 | 82 |
bone marrow | 2.59e-10 | 76 |
skeletal element | 6.77e-10 | 90 |
immune system | 1.49e-09 | 93 |
skeletal system | 1.28e-08 | 100 |
hemolymphoid system | 1.45e-07 | 108 |
hematopoietic system | 5.97e-07 | 98 |
blood island | 5.97e-07 | 98 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.