Personal tools

NonredundantMotifs:71: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
m (Autoedit moved page MotifCluster2013March:Non redundant71 to NonredundantMotifs:Motif71 without leaving a redirect: NSchange)
m (Autoedit moved page NonredundantMotifs:Motif71 to NonredundantMotifs:71 without leaving a redirect: NSchange)
 

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant71
  • db :UNIPROBE
  • Id :Sox8_secondary
  • name :SCI09
  • score :0.05328855367929437
  • External refs:
EntrezGene:30812
UniProt:30812

  • Internal refs:
EntrezGene:30812


Motif matrix
P0ACGT
10.4119371752993420.1726713327363270.205871950382750.20951954158158
20.1711085209403620.4966603264378580.1321112214889790.200119931132801
30.8486368103508770.03833831994458820.01865518024890980.0943696894556253
40.02271048579204060.02788516506292960.03229358331389110.917110765831139
50.03453819232196090.01761627636624840.02218411649247940.925661414819311
60.06002110340518510.8075339410759920.02972635623003590.102718599288788
70.9104287805768310.01645062234375650.06286204090406610.0102585561753462
80.04997033517081430.1178013509391920.1640187834885770.668209530401417
90.2328069257113580.09326343906225810.5687200729738610.105209562252523
100.4177350418436690.1876362028388690.160114829867190.234513925450272
110.2642838316332990.3356803584997840.2039950505783120.196040759288605
120.5244488390375640.2038444726097630.1133710619580230.158335626394649
130.1963197854935940.2876673720651130.2775805047893930.2384323376519
140.2271441616825860.2762673964235630.3683943725699870.128194069323864

Sub Motif Members