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* score    :[[motifscore::{{{score}}}]]
* score    :[[motifscore::{{{score}}}]]
* Entry name : [http://www.uniprot.org/uniprot/?query={{{uniprot_entry_name}}} {{{uniprot_entry_name}}}]
* Entry name : [http://www.uniprot.org/uniprot/?query={{{uniprot_entry_name}}} {{{uniprot_entry_name}}}]
* Entrez GeneID :[http://www.ncbi.nlm.nih.gov/gene?term={{{entrez_gene_id}}}  {{{entrez_gene_id}}}]
* Entrez GeneID :[http://www.ncbi.nlm.nih.gov/gene?term={{{entrez_gene_id}}}  [[GeneID::{{{entrez_gene_id}}}]]]


<!--{{#ifeq: {{{representative_motif_db}}} | JASPAR |[[JASPAR_motif:{{{representative_motif_id}}}|]] | not equal}}-->  
<!--{{#ifeq: {{{representative_motif_db}}} | JASPAR |[[JASPAR_motif:{{{representative_motif_id}}}|]] | not equal}}-->  

Revision as of 13:47, 31 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name  :{{{name}}}
  • db  :{{{representative_motif_db}}}
  • Id  :{{{representative_motif_id}}}
  • name  :{{{representative_motif_name}}}
  • score  :{{{score}}}
  • Entry name : {{{uniprot_entry_name}}}
  • Entrez GeneID :{{{entrez_gene_id}}}


Motif matrix
{{{PWM}}}

Sub Motif Members