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Analysis information:
Analysis information:
   Analyst: Ivan Kulakovskiy, Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon
   Analyst: Ivan Kulakovskiy, Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon
     208 clusters of known motifs were produced by MACRO-APE
     208 clusters of known motifs were produced by MACRO-APE [http://autosome.ru/macroape/ click for the link]
(http://autosome.ru/macroape/)
     using the general phase1 motif clustering procedure applied for known motif collections.
     using the general phase1 motif clustering procedure applied for
<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selectedbased on motif-promoter correlation values.For each cluster only motifs with an average distance to other members not greater than mean+SD were considered as representatives.
known motif collections.
<br>207 of 208 clusters had at least one member passing motif-promoter
correlation procedure.
    For these clusters representative motifs were selected
    based on motif-promoter correlation values.
    For each cluster only motifs with an average distance to other members
    not greater than mean+SD were considered as representatives.
}}
}}
<br>
<br>

Revision as of 16:43, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy <br>Date: May 2013Collection Name: non-redundantAnalysis information: Analyst: Ivan Kulakovskiy, Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon 208 clusters of known motifs were produced by MACRO-APE click for the link using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selectedbased on motif-promoter correlation values.For each cluster only motifs with an average distance to other members not greater than mean+SD were considered as representatives.

  • Name  :{{{name}}}
  • db  :{{{representative_motif_db}}}
  • Id  :{{{representative_motif_id}}}
  • name  :{{{representative_motif_name}}}
  • score  :{{{score}}}
  • Entry name : {{{uniprot_entry_name}}}
  • Entrez GeneID :{{{entrez_gene_id}}}


Motif matrix
{{{PWM}}}

Sub Motif Members