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NonredundantMotifs:118: Difference between revisions

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|PWM=PO;A;C;G;T!1;42.557138;1.724301;138.766552;0.892626!2;24.987809;140.968461;2.58498;15.399367!3;160.797641;0.914276;7.614839;14.613861!4;18.009781;2.680297;3.733417;159.517122!5;152.060941;8.213805;5.302818;18.363053!6;169.240198;3.726728;7.36561;3.608081!7;60.855464;2.810537;0.939475;119.335141!8;7.981627;0;0;175.95899!9;18.153798;17.484917;5.424454;142.877448!10;182.153249;0.854631;0;0.932737!11;1.827409;5.598665;7.345752;169.168791
|PWM=PO;A;C;G;T!1;42.557138;1.724301;138.766552;0.892626!2;24.987809;140.968461;2.58498;15.399367!3;160.797641;0.914276;7.614839;14.613861!4;18.009781;2.680297;3.733417;159.517122!5;152.060941;8.213805;5.302818;18.363053!6;169.240198;3.726728;7.36561;3.608081!7;60.855464;2.810537;0.939475;119.335141!8;7.981627;0;0;175.95899!9;18.153798;17.484917;5.424454;142.877448!10;182.153249;0.854631;0;0.932737!11;1.827409;5.598665;7.345752;169.168791
|entrez_gene_id=POU6F1
|entrez_gene_id=POU6F1
|motif_cluster_2013_march_motif_members= /SWISSREGULON:POU6F1.p2 /HOCOMOCO:PO6F1_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:PO6F1_f1 /SWISSREGULON:POU6F1.p2
|name=known118
|name=non-redundant118
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=POU6F1.p2
|representative_motif_id=POU6F1.p2
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant118
  • db :SWISSREGULON
  • Id :POU6F1.p2
  • name :POU6F1
  • score :0.03323062020154045
  • External refs:
EntrezGene:POU6F1
UniProt:POU6F1

  • Internal refs:
EntrezGene:POU6F1


Motif matrix
POACGT
142.5571381.724301138.7665520.892626
224.987809140.9684612.5849815.399367
3160.7976410.9142767.61483914.613861
418.0097812.6802973.733417159.517122
5152.0609418.2138055.30281818.363053
6169.2401983.7267287.365613.608081
760.8554642.8105370.939475119.335141
87.98162700175.95899
918.15379817.4849175.424454142.877448
10182.1532490.85463100.932737
111.8274095.5986657.345752169.168791

Sub Motif Members