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NonredundantMotifs:70: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;35.736564;43.346026;31.927726;21.224408!2;40.319537;25.097355;48.676;18.141832!3;19.653445;69.263047;29.079804;14.238428!4;70.056897;0.938204;36.675475;24.564148!5;68.753828;8.494474;39.928708;15.057714!6;1.830617;65.164424;35.83389;29.405793!7;0;2.885366;1.829134;127.520224!8;1.886979;119.265036;3.616792;7.465917!9;0;130.390775;0;1.843949!10;0;113.360071;0;18.874653!11;29.86381;70.231678;0;32.139236!12;60.782575;10.508074;48.745422;12.198653!13;30.473341;0.902129;99.003523;1.855731!14;52.429385;0;76.90704;2.898299!15;0.972895;0.908878;130.352951;0!16;82.413608;9.26798;32.023964;8.529172!17;51.490577;32.26245;47.509697;0.972!18;9.533474;53.999977;32.92053;35.780743!19;32.68526;19.73632;53.784695;26.028449!20;3.69832;29.716713;54.18171;44.637981!21;28.019157;10.473004;91.854299;1.888264!22;18.868819;38.889143;31.993486;42.483276
|PWM=P0;A;C;G;T!1;182.51539556040018;543.2421476854983;576.8183564021358;502.6258187099166!2;70.91794422713683;373.4261075689057;129.46480076197;1231.3928657999181!3;1.542392180448046;1799.9395140889035;3.181057981849563;0.5387541067148484!4;7.884337885558359;1608.0456751580589;13.21034723255858;176.06135808174844!5;2.0586404385669415;1726.111926972793;1.519886331852093;75.51126461470419!6;381.04976020900915;4.687835209743753;88.49324853638379;1330.9708744027962!7;130.02029332310875;15.628074336756631;1248.177620521275;411.3757301767931!8;106.91041166772227;35.50028667114703;1661.1998740677757;1.5911459512727935!9;433.25227678564084;0.0;1324.0001543887654;47.94928718352115!10;0.49459538704543676;0.48486305479510394;1804.2222599160752;0.0!11;966.4226399737722;145.61719231821368;441.29490103797434;251.86698502797753!12;421.51671610287826;737.2106387585017;467.2942005535073;179.1801629430596
|entrez_gene_id=EBF1
|entrez_gene_id=1879
|motif_cluster_2013_march_motif_members= /JASPAR:MA0154.1;EBF1 /SWISSREGULON:EBF1.p2 /HOMER:EBF1_proBcell-EBF-ChIP-Seq /HOCOMOCO:COE1_f2
|motif_cluster_2013_march_motif_members= /HOCOMOCO:COE1_f2 /HOMER:EBF1_proBcell-EBF-ChIP-Seq /JASPAR:MA0154.1;EBF1 /SWISSREGULON:EBF1.p2
|name=known70
|name=non-redundant70
|representative_motif_db=SWISSREGULON
|representative_motif_db=HOCOMOCO
|representative_motif_id=EBF1.p2
|representative_motif_id=COE1_f2
|representative_motif_name=EBF1
|representative_motif_name=  
|score=0.893570516768295
|score=0.3722945507074686
|uniprot_entry_name=EBF1
|uniprot_entry_name=COE1_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant70
  • db :HOCOMOCO
  • Id :COE1_f2
  • name  :
  • score :0.3722945507074686
  • External refs:
EntrezGene:1879
UniProt:1879

  • Internal refs:
EntrezGene:1879


Motif matrix
P0ACGT
1182.51539556040018543.2421476854983576.8183564021358502.6258187099166
270.91794422713683373.4261075689057129.464800761971231.3928657999181
31.5423921804480461799.93951408890353.1810579818495630.5387541067148484
47.8843378855583591608.045675158058913.21034723255858176.06135808174844
52.05864043856694151726.1119269727931.51988633185209375.51126461470419
6381.049760209009154.68783520974375388.493248536383791330.9708744027962
7130.0202933231087515.6280743367566311248.177620521275411.3757301767931
8106.9104116677222735.500286671147031661.19987406777571.5911459512727935
9433.252276785640840.01324.000154388765447.94928718352115
100.494595387045436760.484863054795103941804.22225991607520.0
11966.4226399737722145.61719231821368441.29490103797434251.86698502797753
12421.51671610287826737.2106387585017467.2942005535073179.1801629430596

Sub Motif Members

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