NonredundantMotifs:136: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;0;94.386066;3.963131;0!2;97.360507;0;0.98869;0!3;75.922317;3.904605;18.522275;0!4;0;2.909393;95.439804;0!5;0.986644;0;0;97.362553!6;1.94271;0;93.492128;2.914359!7;14.704553;68.996977;7.777652;6.870015!8;7.847022;2.908617;87.593558;0!9;6.80965;6.836416;0.987379;83.715752!10;4.888545;1.945351;91.515301;0 | |PWM=PO;A;C;G;T!1;0;94.386066;3.963131;0!2;97.360507;0;0.98869;0!3;75.922317;3.904605;18.522275;0!4;0;2.909393;95.439804;0!5;0.986644;0;0;97.362553!6;1.94271;0;93.492128;2.914359!7;14.704553;68.996977;7.777652;6.870015!8;7.847022;2.908617;87.593558;0!9;6.80965;6.836416;0.987379;83.715752!10;4.888545;1.945351;91.515301;0 | ||
|entrez_gene_id= | |entrez_gene_id=HMX1 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HMX1.p2 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:HMX1.p2 | ||
|name=known136 | |name=known136 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=HMX1.p2 | |representative_motif_id=HMX1.p2 | ||
|representative_motif_name= | |representative_motif_name=HMX1 | ||
|score=0.12278249296235977 | |score=0.12278249296235977 | ||
|uniprot_entry_name= | |uniprot_entry_name=HMX1 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known136
- db :SWISSREGULON
- Id :HMX1.p2
- name :HMX1
- score :0.12278249296235977
- External refs:
- Internal refs:
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Sub Motif Members
