NonredundantMotifs:124: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;190.588231;58.225336;37.529591;7.642382!2;187.997023;12.310246;11.795105;81.883166!3;16.964664;116.348133;91.817924;68.854819!4;22.333747;174.317872;18.360546;78.973375!5;217.449331;36.605219;17.471784;22.459206!6;52.859072;155.887157;35.124544;50.114767!7;288.657783;3.385558;1.454079;0.48812!8;276.666681;6.562214;9.483289;1.273356!9;10.035279;25.358044;14.497796;244.094421!10;264.797942;15.340735;9.546525;4.300338!11;2.857382;210.70865;7.142706;73.276802!12;107.641406;124.852471;16.179014;45.312649!13;164.846367;61.779998;65.145906;2.213269!14;214.17431;39.15656;31.877775;8.776895 | |PWM=PO;A;C;G;T!1;190.588231;58.225336;37.529591;7.642382!2;187.997023;12.310246;11.795105;81.883166!3;16.964664;116.348133;91.817924;68.854819!4;22.333747;174.317872;18.360546;78.973375!5;217.449331;36.605219;17.471784;22.459206!6;52.859072;155.887157;35.124544;50.114767!7;288.657783;3.385558;1.454079;0.48812!8;276.666681;6.562214;9.483289;1.273356!9;10.035279;25.358044;14.497796;244.094421!10;264.797942;15.340735;9.546525;4.300338!11;2.857382;210.70865;7.142706;73.276802!12;107.641406;124.852471;16.179014;45.312649!13;164.846367;61.779998;65.145906;2.213269!14;214.17431;39.15656;31.877775;8.776895 | ||
|entrez_gene_id= | |entrez_gene_id=ARID5B | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ARID5B.p2 /HOCOMOCO:ARI5B_f1 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:ARID5B.p2 /HOCOMOCO:ARI5B_f1 | ||
|name=known124 | |name=known124 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=ARID5B.p2 | |representative_motif_id=ARID5B.p2 | ||
|representative_motif_name= | |representative_motif_name=ARID5B | ||
|score=0.05444044064092106 | |score=0.05444044064092106 | ||
|uniprot_entry_name= | |uniprot_entry_name=ARID5B | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known124
- db :SWISSREGULON
- Id :ARID5B.p2
- name :ARID5B
- score :0.05444044064092106
- External refs:
- Internal refs:
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Sub Motif Members
