NonredundantMotifs:84: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;31.289792;225.66971;9.910344;10.746371!2;8.774075;260.087714;0.967478;7.78695!3;22.60165;247.211811;2.938054;4.864702!4;2.937916;252.305408;11.698205;10.674688!5;133.572578;138.152575;0.975621;4.915443!6;182.542949;85.266814;2.936991;6.869463!7;118.912106;152.846543;3.915805;1.941763!8;71.129964;190.927166;1.928579;13.630508!9;0.957928;272.766358;0.973771;2.91816!10;247.48044;6.758236;9.728949;13.648592!11;32.130469;234.68241;7.865718;2.93762!12;31.992572;241.719698;0;3.903947!13;26.32765;239.596153;0;11.692414!14;72.98442;190.957257;7.82806;5.84648!15;18.437261;252.376801;3.853395;2.94876!16;108.303846;101.04052;7.804664;60.467187!17;42.821348;182.893527;25.382002;26.51934!18;80.859677;181.202079;5.810111;9.74435!19;7.699796;221.944316;46.997056;0.975049!20;56.522138;157.763428;51.683117;11.647534 | |PWM=P0;A;C;G;T!1;31.289792;225.66971;9.910344;10.746371!2;8.774075;260.087714;0.967478;7.78695!3;22.60165;247.211811;2.938054;4.864702!4;2.937916;252.305408;11.698205;10.674688!5;133.572578;138.152575;0.975621;4.915443!6;182.542949;85.266814;2.936991;6.869463!7;118.912106;152.846543;3.915805;1.941763!8;71.129964;190.927166;1.928579;13.630508!9;0.957928;272.766358;0.973771;2.91816!10;247.48044;6.758236;9.728949;13.648592!11;32.130469;234.68241;7.865718;2.93762!12;31.992572;241.719698;0;3.903947!13;26.32765;239.596153;0;11.692414!14;72.98442;190.957257;7.82806;5.84648!15;18.437261;252.376801;3.853395;2.94876!16;108.303846;101.04052;7.804664;60.467187!17;42.821348;182.893527;25.382002;26.51934!18;80.859677;181.202079;5.810111;9.74435!19;7.699796;221.944316;46.997056;0.975049!20;56.522138;157.763428;51.683117;11.647534 | ||
|entrez_gene_id= | |entrez_gene_id=RREB1 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /JASPAR:MA0073.1;RREB1 /SWISSREGULON:RREB1.p2 /HOCOMOCO:RREB1_si | ||
|name=known84 | |name=known84 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=RREB1.p2 | |representative_motif_id=RREB1.p2 | ||
|representative_motif_name= | |representative_motif_name=RREB1 | ||
|score=1.265724185079713 | |score=1.265724185079713 | ||
|uniprot_entry_name= | |uniprot_entry_name=RREB1 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known84
- db :SWISSREGULON
- Id :RREB1.p2
- name :RREB1
- score :1.265724185079713
- External refs:
- Internal refs:
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Sub Motif Members
