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NonredundantMotifs:63: Difference between revisions

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|PWM=P0;A;C;G;T!1;900.2845056299682;246.88800493452695;721.1799420798628;212.64754735563767!2;146.01881823238054;67.73232407111735;1805.0321750803907;62.216682616085315!3;1751.5739590065257;99.77980189455575;71.5051721565525;158.141066942346!4;1697.8530988954549;157.11720535488485;144.14496231636025;81.88473343328027!5;609.4278829797199;445.70595574948914;529.7633735450328;496.10278772574895!6;594.1774530313412;479.6872437161541;707.4864473967361;299.64885585576053!7;290.53444813127476;202.80516174675523;255.71263568374872;1331.9477544382094!8;282.0370473183119;221.85294041580795;223.90424395206676;1353.2057683137991!9;162.86867034941415;1619.2260202016191;222.78392591927684;76.12138352966903!10;208.6801128726763;669.6659486867103;352.9832653047999;849.6706731358073!11;1286.1693450768125;188.63760223889088;504.9312080246656;101.26184465961872!12;118.21530589157489;68.43800450894031;1846.6545562996614;47.6921332997975!13;1544.241468601316;224.01478849514342;186.98043171605383;125.76331118746903!14;1566.5081939186678;99.65095058987866;292.09906037919734;122.74179511223859
|PWM=P0;A;C;G;T!1;900.2845056299682;246.88800493452695;721.1799420798628;212.64754735563767!2;146.01881823238054;67.73232407111735;1805.0321750803907;62.216682616085315!3;1751.5739590065257;99.77980189455575;71.5051721565525;158.141066942346!4;1697.8530988954549;157.11720535488485;144.14496231636025;81.88473343328027!5;609.4278829797199;445.70595574948914;529.7633735450328;496.10278772574895!6;594.1774530313412;479.6872437161541;707.4864473967361;299.64885585576053!7;290.53444813127476;202.80516174675523;255.71263568374872;1331.9477544382094!8;282.0370473183119;221.85294041580795;223.90424395206676;1353.2057683137991!9;162.86867034941415;1619.2260202016191;222.78392591927684;76.12138352966903!10;208.6801128726763;669.6659486867103;352.9832653047999;849.6706731358073!11;1286.1693450768125;188.63760223889088;504.9312080246656;101.26184465961872!12;118.21530589157489;68.43800450894031;1846.6545562996614;47.6921332997975!13;1544.241468601316;224.01478849514342;186.98043171605383;125.76331118746903!14;1566.5081939186678;99.65095058987866;292.09906037919734;122.74179511223859
|entrez_gene_id=3297
|entrez_gene_id=3297
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HSF1,2.p2 /HOMER:HSF1_HepG2-HSF1-ChIP-Seq /UNIPROBE:Zbtb12_primary;SCI09 /HOCOMOCO:HSF1_f2~HSF2_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:HSF2_si~HSF1_f2 /HOMER:HSF1_HepG2-HSF1-ChIP-Seq /SWISSREGULON:HSF1,2.p2 /UNIPROBE:Zbtb12_primary;SCI09
|name=known63
|name=non-redundant63
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=HSF1_f2
|representative_motif_id=HSF1_f2
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant63
  • db :HOCOMOCO
  • Id :HSF1_f2
  • name  :
  • score :0.08200527717586725
  • External refs:
EntrezGene:3297
UniProt:3297

  • Internal refs:
EntrezGene:3297


Motif matrix
P0ACGT
1900.2845056299682246.88800493452695721.1799420798628212.64754735563767
2146.0188182323805467.732324071117351805.032175080390762.216682616085315
31751.573959006525799.7798018945557571.5051721565525158.141066942346
41697.8530988954549157.11720535488485144.1449623163602581.88473343328027
5609.4278829797199445.70595574948914529.7633735450328496.10278772574895
6594.1774530313412479.6872437161541707.4864473967361299.64885585576053
7290.53444813127476202.80516174675523255.712635683748721331.9477544382094
8282.0370473183119221.85294041580795223.904243952066761353.2057683137991
9162.868670349414151619.2260202016191222.7839259192768476.12138352966903
10208.6801128726763669.6659486867103352.9832653047999849.6706731358073
111286.1693450768125188.63760223889088504.9312080246656101.26184465961872
12118.2153058915748968.438004508940311846.654556299661447.6921332997975
131544.241468601316224.01478849514342186.98043171605383125.76331118746903
141566.508193918667899.65095058987866292.09906037919734122.74179511223859

Sub Motif Members

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