NonredundantMotifs:59: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;116.435898;37.725434;37.563411;93.624007!2;145.645849;7.781983;6.484858;125.43606!3;169.630251;6.243395;17.7395;91.735604!4;24.806274;10.919018;0.729676;248.893782!5;266.254944;1.506495;7.575862;10.011449!6;281.56035;0.910397;1.38455;1.493453!7;20.768344;0.752575;248.851998;14.975833!8;2.997625;4.111507;0;278.239618!9;247.194933;2.347959;35.805858;0!10;33.442242;53.883022;4.943265;193.080221!11;166.999221;0.806899;32.612778;84.929852!12;51.030239;30.272764;10.706358;193.339389 | |PWM=P0;A;C;G;T!1;116.435898;37.725434;37.563411;93.624007!2;145.645849;7.781983;6.484858;125.43606!3;169.630251;6.243395;17.7395;91.735604!4;24.806274;10.919018;0.729676;248.893782!5;266.254944;1.506495;7.575862;10.011449!6;281.56035;0.910397;1.38455;1.493453!7;20.768344;0.752575;248.851998;14.975833!8;2.997625;4.111507;0;278.239618!9;247.194933;2.347959;35.805858;0!10;33.442242;53.883022;4.943265;193.080221!11;166.999221;0.806899;32.612778;84.929852!12;51.030239;30.272764;10.706358;193.339389 | ||
|entrez_gene_id= | |entrez_gene_id=NKX3-1 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:FOX(C1,C2).p2~NKX3-1.p2 | |motif_cluster_2013_march_motif_members= /JASPAR:MA0032.1;FOXC1~MA0124.1;NKX3-1 /SWISSREGULON:FOX(C1,C2).p2~NKX3-1.p2 /HOCOMOCO:NKX31_si | ||
|name=known59 | |name=known59 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=NKX3-1.p2 | |representative_motif_id=NKX3-1.p2 | ||
|representative_motif_name= | |representative_motif_name=NKX3-1 | ||
|score=0.08646865630457126 | |score=0.08646865630457126 | ||
|uniprot_entry_name= | |uniprot_entry_name=NKX3-1 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known59
- db :SWISSREGULON
- Id :NKX3-1.p2
- name :NKX3-1
- score :0.08646865630457126
- External refs:
- Internal refs:
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Sub Motif Members
