NonredundantMotifs:39: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;16.702876;113.980829;69.440383;64.796271!2;57.221573;70.343766;99.035725;38.319295!3;33.559802;0.964677;230.39588;0!4;5.909997;18.534079;20.688174;219.788109!5;40.233566;138.299229;3.991899;82.395665!6;78.781332;7.898323;159.635927;18.604777!7;0;246.151065;0;18.769294!8;2.941368;219.655377;5.812932;36.510682!9;203.168924;26.506288;14.741298;20.503849!10;15.566443;30.368241;3.922422;215.063253!11;49.134137;0;215.786222;0!12;1.929997;0;262.990362;0!13;38.177179;184.502717;11.642711;30.597752!14;255.07742;1.929997;6.918904;0.994038!15;261.010494;0;3.909865;0!16;0;263.925107;0;0.995252!17;78.29687;90.163157;78.709988;17.750344!18;87.498768;30.410158;131.299536;15.711897 | |PWM=P0;A;C;G;T!1;16.702876;113.980829;69.440383;64.796271!2;57.221573;70.343766;99.035725;38.319295!3;33.559802;0.964677;230.39588;0!4;5.909997;18.534079;20.688174;219.788109!5;40.233566;138.299229;3.991899;82.395665!6;78.781332;7.898323;159.635927;18.604777!7;0;246.151065;0;18.769294!8;2.941368;219.655377;5.812932;36.510682!9;203.168924;26.506288;14.741298;20.503849!10;15.566443;30.368241;3.922422;215.063253!11;49.134137;0;215.786222;0!12;1.929997;0;262.990362;0!13;38.177179;184.502717;11.642711;30.597752!14;255.07742;1.929997;6.918904;0.994038!15;261.010494;0;3.909865;0!16;0;263.925107;0;0.995252!17;78.29687;90.163157;78.709988;17.750344!18;87.498768;30.410158;131.299536;15.711897 | ||
|entrez_gene_id= | |entrez_gene_id=RFX1 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:RFX1..5_RFXANK_RFXAP.p2 /HOMER:RFX3_K562-RFX3-ChIP-Seq~RFX1_NPC-Rfx1-ChIP-Seq /UNIPROBE:Rfxdc2_primary;SCI09~Rfx4_primary;SCI09~Rfx3_primary;SCI09 /HOCOMOCO:RFX2_f1~RFX1_f1~RFX3_f1 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:RFX1..5_RFXANK_RFXAP.p2 /HOMER:RFX3_K562-RFX3-ChIP-Seq~RFX1_NPC-Rfx1-ChIP-Seq /UNIPROBE:Rfxdc2_primary;SCI09~Rfx4_primary;SCI09~Rfx3_primary;SCI09 /HOCOMOCO:RFX2_f1~RFX1_f1~RFX3_f1 | ||
|name=known39 | |name=known39 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=RFX1..5_RFXANK_RFXAP.p2 | |representative_motif_id=RFX1..5_RFXANK_RFXAP.p2 | ||
|representative_motif_name= | |representative_motif_name=RFX1 | ||
|score=0.4075571500297151 | |score=0.4075571500297151 | ||
|uniprot_entry_name= | |uniprot_entry_name=RFX1 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known39
- db :SWISSREGULON
- Id :RFX1..5_RFXANK_RFXAP.p2
- name :RFX1
- score :0.4075571500297151
- External refs:
- Internal refs:
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Sub Motif Members
