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NonredundantMotifs:48: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;61;145;152;31!2;16;46;18;309!3;352;0;2;35!4;3;10;2;374!5;354;0;5;30!6;268;0;0;121!7;360;3;20;6!8;222;2;44;121!9;155;44;157;33!10;56;135;150;48!11;83;147;128;31!12;82;127;128;52!13;82;118;128;61!14;68;107;139;75!15;77;101;140;71
|entrez_gene_id=6908
|entrez_gene_id=6908
|motif_cluster_2013_march_motif_members= /JASPAR:MA0033.1;FOXL1~MA0108.2;TBP /HOCOMOCO:TBP_f1 /SWISSREGULON:FOXL1.p2~TBP.p2 /UNIPROBE:Six6_secondary;SCI09~Zfp128_secondary;SCI09
|motif_cluster_2013_march_motif_members= /SWISSREGULON:FOXL1.p2~TBP.p2 /JASPAR:MA0033.1;FOXL1~MA0108.2;TBP /UNIPROBE:Six6_secondary;SCI09~Zfp128_secondary;SCI09 /HOCOMOCO:TBP_f1
|name=known48
|name=known48
|representative_motif_db=JASPAR
|representative_motif_db=JASPAR

Revision as of 10:46, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known48
  • db :JASPAR
  • Id :MA0108.2
  • name :TBP
  • score :0.12305722137652626
  • External refs:
EntrezGene:6908
UniProt:6908

  • Internal refs:
EntrezGene:6908


Motif matrix
P0ACGT
16114515231
2164618309
33520235
43102374
53540530
626800121
73603206
8222244121
91554415733
105613515048
118314712831
128212712852
138211812861
146810713975
157710114071

Sub Motif Members